Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4834

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4833 and PfGW456L13_4834 are separated by 184 nucleotidesPfGW456L13_4834 and PfGW456L13_4835 are separated by 5 nucleotides PfGW456L13_4833 - PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69), at 5,397,108 to 5,398,823 _4833 PfGW456L13_4834 - FIG137478: Hypothetical protein, at 5,399,008 to 5,399,319 _4834 PfGW456L13_4835 - Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3), at 5,399,325 to 5,403,221 _4835 Position (kb) 5399 5400Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5398.146 kb on + strand, within PfGW456L13_4833at 5398.158 kb on + strand, within PfGW456L13_4833at 5398.158 kb on + strand, within PfGW456L13_4833at 5398.158 kb on + strand, within PfGW456L13_4833at 5398.158 kb on + strand, within PfGW456L13_4833at 5398.158 kb on + strand, within PfGW456L13_4833at 5398.158 kb on + strand, within PfGW456L13_4833at 5398.158 kb on + strand, within PfGW456L13_4833at 5398.159 kb on - strand, within PfGW456L13_4833at 5398.159 kb on - strand, within PfGW456L13_4833at 5398.159 kb on - strand, within PfGW456L13_4833at 5398.159 kb on - strand, within PfGW456L13_4833at 5398.161 kb on + strand, within PfGW456L13_4833at 5398.161 kb on + strand, within PfGW456L13_4833at 5398.161 kb on + strand, within PfGW456L13_4833at 5398.162 kb on - strand, within PfGW456L13_4833at 5398.162 kb on - strand, within PfGW456L13_4833at 5398.162 kb on - strand, within PfGW456L13_4833at 5398.162 kb on - strand, within PfGW456L13_4833at 5398.162 kb on - strand, within PfGW456L13_4833at 5398.162 kb on - strand, within PfGW456L13_4833at 5398.181 kb on + strand, within PfGW456L13_4833at 5398.272 kb on + strand, within PfGW456L13_4833at 5398.272 kb on + strand, within PfGW456L13_4833at 5398.272 kb on + strand, within PfGW456L13_4833at 5398.272 kb on + strand, within PfGW456L13_4833at 5398.272 kb on + strand, within PfGW456L13_4833at 5398.272 kb on + strand, within PfGW456L13_4833at 5398.272 kb on + strand, within PfGW456L13_4833at 5398.272 kb on + strand, within PfGW456L13_4833at 5398.272 kb on + strand, within PfGW456L13_4833at 5398.272 kb on + strand, within PfGW456L13_4833at 5398.272 kb on + strand, within PfGW456L13_4833at 5398.273 kb on - strand, within PfGW456L13_4833at 5398.273 kb on - strand, within PfGW456L13_4833at 5398.273 kb on - strand, within PfGW456L13_4833at 5398.273 kb on - strand, within PfGW456L13_4833at 5398.273 kb on - strand, within PfGW456L13_4833at 5398.273 kb on - strand, within PfGW456L13_4833at 5398.273 kb on - strand, within PfGW456L13_4833at 5398.273 kb on - strand, within PfGW456L13_4833at 5398.273 kb on - strand, within PfGW456L13_4833at 5398.273 kb on - strand, within PfGW456L13_4833at 5398.273 kb on - strand, within PfGW456L13_4833at 5398.495 kb on + strand, within PfGW456L13_4833at 5398.711 kb on + strandat 5398.711 kb on + strandat 5398.711 kb on + strandat 5398.711 kb on + strandat 5398.711 kb on + strandat 5398.711 kb on + strandat 5398.712 kb on - strandat 5398.712 kb on - strandat 5398.712 kb on - strandat 5398.730 kb on + strandat 5398.821 kb on + strandat 5398.821 kb on + strandat 5398.821 kb on + strandat 5398.821 kb on + strandat 5398.822 kb on - strandat 5398.822 kb on - strandat 5398.822 kb on - strandat 5398.822 kb on - strandat 5398.822 kb on - strandat 5398.883 kb on + strandat 5398.883 kb on + strandat 5398.883 kb on + strandat 5398.883 kb on + strandat 5398.884 kb on - strandat 5398.884 kb on - strandat 5398.884 kb on - strandat 5398.942 kb on + strandat 5398.942 kb on + strandat 5398.942 kb on + strandat 5398.942 kb on + strandat 5398.943 kb on - strandat 5399.036 kb on + strandat 5399.036 kb on + strandat 5399.037 kb on - strandat 5399.037 kb on - strandat 5399.037 kb on - strandat 5399.037 kb on - strandat 5399.037 kb on - strandat 5399.229 kb on - strand, within PfGW456L13_4834at 5399.229 kb on - strand, within PfGW456L13_4834at 5399.229 kb on - strand, within PfGW456L13_4834at 5399.315 kb on + strandat 5399.316 kb on - strandat 5399.316 kb on - strandat 5399.326 kb on + strandat 5399.326 kb on + strandat 5399.326 kb on + strandat 5399.326 kb on + strandat 5399.327 kb on - strandat 5399.327 kb on - strandat 5399.327 kb on - strandat 5399.327 kb on - strandat 5399.327 kb on - strandat 5399.327 kb on - strandat 5399.327 kb on - strandat 5399.327 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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5,398,146 + PfGW456L13_4833 0.60 +0.1
5,398,158 + PfGW456L13_4833 0.61 -0.4
5,398,158 + PfGW456L13_4833 0.61 -0.2
5,398,158 + PfGW456L13_4833 0.61 -0.2
5,398,158 + PfGW456L13_4833 0.61 -0.2
5,398,158 + PfGW456L13_4833 0.61 +0.5
5,398,158 + PfGW456L13_4833 0.61 +0.1
5,398,158 + PfGW456L13_4833 0.61 +0.6
5,398,159 - PfGW456L13_4833 0.61 -0.5
5,398,159 - PfGW456L13_4833 0.61 +0.4
5,398,159 - PfGW456L13_4833 0.61 -0.8
5,398,159 - PfGW456L13_4833 0.61 +0.2
5,398,161 + PfGW456L13_4833 0.61 -0.5
5,398,161 + PfGW456L13_4833 0.61 +0.4
5,398,161 + PfGW456L13_4833 0.61 -0.7
5,398,162 - PfGW456L13_4833 0.61 -0.1
5,398,162 - PfGW456L13_4833 0.61 +1.0
5,398,162 - PfGW456L13_4833 0.61 -0.5
5,398,162 - PfGW456L13_4833 0.61 +0.5
5,398,162 - PfGW456L13_4833 0.61 -0.2
5,398,162 - PfGW456L13_4833 0.61 +0.8
5,398,181 + PfGW456L13_4833 0.63 -0.1
5,398,272 + PfGW456L13_4833 0.68 -1.0
5,398,272 + PfGW456L13_4833 0.68 +0.4
5,398,272 + PfGW456L13_4833 0.68 -0.6
5,398,272 + PfGW456L13_4833 0.68 +1.2
5,398,272 + PfGW456L13_4833 0.68 +0.7
5,398,272 + PfGW456L13_4833 0.68 -0.4
5,398,272 + PfGW456L13_4833 0.68 +0.6
5,398,272 + PfGW456L13_4833 0.68 +0.7
5,398,272 + PfGW456L13_4833 0.68 -0.6
5,398,272 + PfGW456L13_4833 0.68 -0.4
5,398,272 + PfGW456L13_4833 0.68 +0.2
5,398,273 - PfGW456L13_4833 0.68 +0.2
5,398,273 - PfGW456L13_4833 0.68 -1.0
5,398,273 - PfGW456L13_4833 0.68 -1.3
5,398,273 - PfGW456L13_4833 0.68 +0.9
5,398,273 - PfGW456L13_4833 0.68 +0.0
5,398,273 - PfGW456L13_4833 0.68 -0.4
5,398,273 - PfGW456L13_4833 0.68 -1.2
5,398,273 - PfGW456L13_4833 0.68 +0.8
5,398,273 - PfGW456L13_4833 0.68 +0.7
5,398,273 - PfGW456L13_4833 0.68 +0.3
5,398,273 - PfGW456L13_4833 0.68 -1.4
5,398,495 + PfGW456L13_4833 0.81 -0.3
5,398,711 + +0.1
5,398,711 + +0.2
5,398,711 + -0.3
5,398,711 + +0.4
5,398,711 + -0.1
5,398,711 + +0.0
5,398,712 - +1.7
5,398,712 - +0.3
5,398,712 - -0.6
5,398,730 + -0.1
5,398,821 + +0.4
5,398,821 + -0.0
5,398,821 + +0.5
5,398,821 + -0.2
5,398,822 - -0.3
5,398,822 - +1.1
5,398,822 - +0.0
5,398,822 - +2.2
5,398,822 - +1.5
5,398,883 + +1.1
5,398,883 + +0.3
5,398,883 + +0.3
5,398,883 + -0.8
5,398,884 - +0.5
5,398,884 - +0.8
5,398,884 - +1.2
5,398,942 + +0.3
5,398,942 + -1.4
5,398,942 + -0.1
5,398,942 + +1.1
5,398,943 - -1.6
5,399,036 + -0.0
5,399,036 + -0.3
5,399,037 - -0.2
5,399,037 - -0.3
5,399,037 - -0.1
5,399,037 - +0.3
5,399,037 - -0.4
5,399,229 - PfGW456L13_4834 0.71 +0.1
5,399,229 - PfGW456L13_4834 0.71 -1.7
5,399,229 - PfGW456L13_4834 0.71 -1.8
5,399,315 + +4.4
5,399,316 - +1.2
5,399,316 - +1.6
5,399,326 + -0.4
5,399,326 + +0.9
5,399,326 + +0.4
5,399,326 + +0.0
5,399,327 - +1.2
5,399,327 - +0.6
5,399,327 - +0.7
5,399,327 - +0.5
5,399,327 - +1.3
5,399,327 - +0.6
5,399,327 - +1.4
5,399,327 - -0.1

Or see this region's nucleotide sequence