Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4677 and PfGW456L13_4678 overlap by 1 nucleotides PfGW456L13_4678 and PfGW456L13_4679 overlap by 13 nucleotides
PfGW456L13_4677 - Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77), at 5,215,598 to 5,216,275
_4677
PfGW456L13_4678 - 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11), at 5,216,275 to 5,217,024
_4678
PfGW456L13_4679 - tRNA pseudouridine 13 synthase (EC 4.2.1.-), at 5,217,012 to 5,218,070
_4679
Position (kb)
5216
5217
5218 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 5215.354 kb on - strand at 5215.360 kb on - strand at 5215.360 kb on - strand at 5215.360 kb on - strand at 5215.360 kb on - strand at 5215.452 kb on - strand at 5215.472 kb on + strand at 5215.473 kb on - strand at 5215.478 kb on + strand at 5215.534 kb on - strand at 5215.553 kb on - strand at 5215.553 kb on - strand at 5215.553 kb on - strand at 5215.767 kb on - strand, within PfGW456L13_4677 at 5215.803 kb on + strand, within PfGW456L13_4677 at 5215.803 kb on + strand, within PfGW456L13_4677 at 5215.804 kb on - strand, within PfGW456L13_4677 at 5215.804 kb on - strand, within PfGW456L13_4677 at 5215.804 kb on - strand, within PfGW456L13_4677 at 5215.804 kb on - strand, within PfGW456L13_4677 at 5216.044 kb on + strand, within PfGW456L13_4677 at 5216.044 kb on + strand, within PfGW456L13_4677 at 5216.044 kb on + strand, within PfGW456L13_4677 at 5216.044 kb on + strand, within PfGW456L13_4677 at 5216.044 kb on + strand, within PfGW456L13_4677 at 5216.044 kb on + strand, within PfGW456L13_4677 at 5216.044 kb on + strand, within PfGW456L13_4677 at 5216.044 kb on + strand, within PfGW456L13_4677 at 5216.044 kb on + strand, within PfGW456L13_4677 at 5216.044 kb on + strand, within PfGW456L13_4677 at 5216.044 kb on + strand, within PfGW456L13_4677 at 5216.044 kb on + strand, within PfGW456L13_4677 at 5216.044 kb on + strand, within PfGW456L13_4677 at 5216.044 kb on + strand, within PfGW456L13_4677 at 5216.044 kb on + strand, within PfGW456L13_4677 at 5216.044 kb on + strand, within PfGW456L13_4677 at 5216.044 kb on + strand, within PfGW456L13_4677 at 5216.045 kb on - strand, within PfGW456L13_4677 at 5216.045 kb on - strand, within PfGW456L13_4677 at 5216.045 kb on - strand, within PfGW456L13_4677 at 5216.045 kb on - strand, within PfGW456L13_4677 at 5216.045 kb on - strand, within PfGW456L13_4677 at 5216.045 kb on - strand, within PfGW456L13_4677 at 5216.045 kb on - strand, within PfGW456L13_4677 at 5216.045 kb on - strand, within PfGW456L13_4677 at 5216.045 kb on - strand, within PfGW456L13_4677 at 5216.045 kb on - strand, within PfGW456L13_4677 at 5216.045 kb on - strand, within PfGW456L13_4677 at 5216.045 kb on - strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.046 kb on + strand, within PfGW456L13_4677 at 5216.047 kb on - strand, within PfGW456L13_4677 at 5216.047 kb on - strand, within PfGW456L13_4677 at 5216.047 kb on - strand, within PfGW456L13_4677 at 5216.047 kb on - strand, within PfGW456L13_4677 at 5216.047 kb on - strand, within PfGW456L13_4677 at 5216.047 kb on - strand, within PfGW456L13_4677 at 5216.047 kb on - strand, within PfGW456L13_4677 at 5216.047 kb on - strand, within PfGW456L13_4677 at 5216.047 kb on - strand, within PfGW456L13_4677 at 5216.047 kb on - strand, within PfGW456L13_4677 at 5216.047 kb on - strand, within PfGW456L13_4677 at 5216.047 kb on - strand, within PfGW456L13_4677 at 5216.047 kb on - strand, within PfGW456L13_4677 at 5216.047 kb on - strand, within PfGW456L13_4677 at 5216.047 kb on - strand, within PfGW456L13_4677 at 5216.047 kb on - strand, within PfGW456L13_4677 at 5216.047 kb on - strand, within PfGW456L13_4677 at 5216.047 kb on - strand, within PfGW456L13_4677 at 5216.047 kb on - strand, within PfGW456L13_4677 at 5216.047 kb on - strand, within PfGW456L13_4677 at 5216.097 kb on + strand, within PfGW456L13_4677 at 5216.097 kb on + strand, within PfGW456L13_4677 at 5216.097 kb on + strand, within PfGW456L13_4677 at 5216.098 kb on - strand, within PfGW456L13_4677 at 5216.190 kb on + strand, within PfGW456L13_4677 at 5216.254 kb on + strand at 5216.254 kb on + strand at 5216.255 kb on - strand at 5216.360 kb on + strand, within PfGW456L13_4678 at 5216.360 kb on + strand, within PfGW456L13_4678 at 5216.360 kb on + strand, within PfGW456L13_4678 at 5216.360 kb on + strand, within PfGW456L13_4678 at 5216.360 kb on + strand, within PfGW456L13_4678 at 5216.361 kb on - strand, within PfGW456L13_4678 at 5216.361 kb on - strand, within PfGW456L13_4678 at 5216.361 kb on - strand, within PfGW456L13_4678 at 5216.558 kb on - strand, within PfGW456L13_4678 at 5216.638 kb on + strand, within PfGW456L13_4678 at 5216.638 kb on + strand, within PfGW456L13_4678 at 5216.639 kb on - strand, within PfGW456L13_4678 at 5216.639 kb on - strand, within PfGW456L13_4678 at 5216.639 kb on - strand, within PfGW456L13_4678 at 5216.721 kb on - strand, within PfGW456L13_4678 at 5216.844 kb on + strand, within PfGW456L13_4678 at 5216.949 kb on - strand, within PfGW456L13_4678 at 5216.966 kb on + strand at 5216.966 kb on + strand at 5216.966 kb on + strand at 5216.966 kb on + strand at 5216.967 kb on - strand at 5216.967 kb on - strand at 5216.967 kb on - strand at 5217.007 kb on - strand at 5217.018 kb on + strand at 5217.019 kb on - strand at 5217.019 kb on - strand at 5217.019 kb on - strand at 5217.019 kb on - strand at 5217.019 kb on - strand at 5217.019 kb on - strand at 5217.019 kb on - strand at 5217.076 kb on - strand at 5217.076 kb on - strand at 5217.462 kb on - strand, within PfGW456L13_4679 at 5217.589 kb on + strand, within PfGW456L13_4679 at 5217.589 kb on + strand, within PfGW456L13_4679 at 5217.589 kb on + strand, within PfGW456L13_4679 at 5217.590 kb on - strand, within PfGW456L13_4679 at 5217.590 kb on - strand, within PfGW456L13_4679 at 5217.608 kb on + strand, within PfGW456L13_4679 at 5217.844 kb on + strand, within PfGW456L13_4679 at 5217.844 kb on + strand, within PfGW456L13_4679 at 5217.845 kb on - strand, within PfGW456L13_4679
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 5,215,354 - -2.6 5,215,360 - -1.5 5,215,360 - -0.7 5,215,360 - -1.2 5,215,360 - -0.1 5,215,452 - +1.9 5,215,472 + -0.6 5,215,473 - +1.4 5,215,478 + -0.6 5,215,534 - +2.4 5,215,553 - -0.3 5,215,553 - +2.3 5,215,553 - +1.2 5,215,767 - PfGW456L13_4677 0.25 +1.0 5,215,803 + PfGW456L13_4677 0.30 -1.0 5,215,803 + PfGW456L13_4677 0.30 -0.1 5,215,804 - PfGW456L13_4677 0.30 +1.2 5,215,804 - PfGW456L13_4677 0.30 +1.4 5,215,804 - PfGW456L13_4677 0.30 +1.0 5,215,804 - PfGW456L13_4677 0.30 +2.0 5,216,044 + PfGW456L13_4677 0.66 -1.6 5,216,044 + PfGW456L13_4677 0.66 -3.6 5,216,044 + PfGW456L13_4677 0.66 -2.0 5,216,044 + PfGW456L13_4677 0.66 -1.8 5,216,044 + PfGW456L13_4677 0.66 -0.4 5,216,044 + PfGW456L13_4677 0.66 -1.2 5,216,044 + PfGW456L13_4677 0.66 -1.3 5,216,044 + PfGW456L13_4677 0.66 -2.6 5,216,044 + PfGW456L13_4677 0.66 -0.8 5,216,044 + PfGW456L13_4677 0.66 -2.9 5,216,044 + PfGW456L13_4677 0.66 -3.2 5,216,044 + PfGW456L13_4677 0.66 -1.8 5,216,044 + PfGW456L13_4677 0.66 -2.3 5,216,044 + PfGW456L13_4677 0.66 -1.1 5,216,044 + PfGW456L13_4677 0.66 -2.4 5,216,044 + PfGW456L13_4677 0.66 -1.5 5,216,044 + PfGW456L13_4677 0.66 -3.9 5,216,045 - PfGW456L13_4677 0.66 +1.8 5,216,045 - PfGW456L13_4677 0.66 +1.3 5,216,045 - PfGW456L13_4677 0.66 +1.5 5,216,045 - PfGW456L13_4677 0.66 +0.6 5,216,045 - PfGW456L13_4677 0.66 +0.8 5,216,045 - PfGW456L13_4677 0.66 +0.5 5,216,045 - PfGW456L13_4677 0.66 +1.6 5,216,045 - PfGW456L13_4677 0.66 +1.1 5,216,045 - PfGW456L13_4677 0.66 +0.8 5,216,045 - PfGW456L13_4677 0.66 +1.3 5,216,045 - PfGW456L13_4677 0.66 +1.1 5,216,045 - PfGW456L13_4677 0.66 +1.4 5,216,046 + PfGW456L13_4677 0.66 -0.8 5,216,046 + PfGW456L13_4677 0.66 -1.2 5,216,046 + PfGW456L13_4677 0.66 -3.0 5,216,046 + PfGW456L13_4677 0.66 -2.5 5,216,046 + PfGW456L13_4677 0.66 -3.3 5,216,046 + PfGW456L13_4677 0.66 -3.4 5,216,046 + PfGW456L13_4677 0.66 -2.1 5,216,046 + PfGW456L13_4677 0.66 -1.0 5,216,046 + PfGW456L13_4677 0.66 -1.8 5,216,046 + PfGW456L13_4677 0.66 -1.7 5,216,046 + PfGW456L13_4677 0.66 -1.7 5,216,046 + PfGW456L13_4677 0.66 +0.2 5,216,046 + PfGW456L13_4677 0.66 -1.0 5,216,046 + PfGW456L13_4677 0.66 -2.2 5,216,046 + PfGW456L13_4677 0.66 -1.4 5,216,046 + PfGW456L13_4677 0.66 -1.8 5,216,046 + PfGW456L13_4677 0.66 -0.9 5,216,046 + PfGW456L13_4677 0.66 -3.4 5,216,046 + PfGW456L13_4677 0.66 -2.2 5,216,046 + PfGW456L13_4677 0.66 -0.1 5,216,046 + PfGW456L13_4677 0.66 -2.8 5,216,046 + PfGW456L13_4677 0.66 -1.5 5,216,046 + PfGW456L13_4677 0.66 -2.6 5,216,046 + PfGW456L13_4677 0.66 -2.3 5,216,046 + PfGW456L13_4677 0.66 -1.2 5,216,046 + PfGW456L13_4677 0.66 -1.8 5,216,046 + PfGW456L13_4677 0.66 -1.6 5,216,047 - PfGW456L13_4677 0.66 +2.0 5,216,047 - PfGW456L13_4677 0.66 +1.0 5,216,047 - PfGW456L13_4677 0.66 +0.1 5,216,047 - PfGW456L13_4677 0.66 +0.6 5,216,047 - PfGW456L13_4677 0.66 +0.6 5,216,047 - PfGW456L13_4677 0.66 +1.1 5,216,047 - PfGW456L13_4677 0.66 -0.3 5,216,047 - PfGW456L13_4677 0.66 -0.8 5,216,047 - PfGW456L13_4677 0.66 +0.8 5,216,047 - PfGW456L13_4677 0.66 +0.5 5,216,047 - PfGW456L13_4677 0.66 +1.9 5,216,047 - PfGW456L13_4677 0.66 +1.2 5,216,047 - PfGW456L13_4677 0.66 +1.3 5,216,047 - PfGW456L13_4677 0.66 +2.1 5,216,047 - PfGW456L13_4677 0.66 +0.4 5,216,047 - PfGW456L13_4677 0.66 +0.5 5,216,047 - PfGW456L13_4677 0.66 +0.7 5,216,047 - PfGW456L13_4677 0.66 +1.7 5,216,047 - PfGW456L13_4677 0.66 +0.8 5,216,047 - PfGW456L13_4677 0.66 +2.0 5,216,097 + PfGW456L13_4677 0.74 -1.4 5,216,097 + PfGW456L13_4677 0.74 -2.6 5,216,097 + PfGW456L13_4677 0.74 -2.0 5,216,098 - PfGW456L13_4677 0.74 +1.4 5,216,190 + PfGW456L13_4677 0.87 -1.6 5,216,254 + -0.6 5,216,254 + -0.4 5,216,255 - +0.8 5,216,360 + PfGW456L13_4678 0.11 -4.1 5,216,360 + PfGW456L13_4678 0.11 -2.9 5,216,360 + PfGW456L13_4678 0.11 -2.9 5,216,360 + PfGW456L13_4678 0.11 -3.2 5,216,360 + PfGW456L13_4678 0.11 -3.4 5,216,361 - PfGW456L13_4678 0.11 +0.9 5,216,361 - PfGW456L13_4678 0.11 +0.2 5,216,361 - PfGW456L13_4678 0.11 -0.3 5,216,558 - PfGW456L13_4678 0.38 -0.1 5,216,638 + PfGW456L13_4678 0.48 -3.5 5,216,638 + PfGW456L13_4678 0.48 -2.7 5,216,639 - PfGW456L13_4678 0.49 -0.6 5,216,639 - PfGW456L13_4678 0.49 -1.6 5,216,639 - PfGW456L13_4678 0.49 -0.3 5,216,721 - PfGW456L13_4678 0.59 -1.6 5,216,844 + PfGW456L13_4678 0.76 -1.5 5,216,949 - PfGW456L13_4678 0.90 -1.9 5,216,966 + -2.3 5,216,966 + -3.0 5,216,966 + -2.5 5,216,966 + -1.2 5,216,967 - -2.0 5,216,967 - -0.9 5,216,967 - -1.1 5,217,007 - -1.1 5,217,018 + -1.3 5,217,019 - -2.8 5,217,019 - -2.2 5,217,019 - -0.7 5,217,019 - +1.0 5,217,019 - -1.7 5,217,019 - -2.7 5,217,019 - -1.5 5,217,076 - -0.4 5,217,076 - -0.7 5,217,462 - PfGW456L13_4679 0.42 +0.8 5,217,589 + PfGW456L13_4679 0.54 -0.3 5,217,589 + PfGW456L13_4679 0.54 -1.2 5,217,589 + PfGW456L13_4679 0.54 -1.1 5,217,590 - PfGW456L13_4679 0.55 -1.0 5,217,590 - PfGW456L13_4679 0.55 -1.8 5,217,608 + PfGW456L13_4679 0.56 -0.5 5,217,844 + PfGW456L13_4679 0.79 -0.6 5,217,844 + PfGW456L13_4679 0.79 -2.0 5,217,845 - PfGW456L13_4679 0.79 -0.9
Or see this region's nucleotide sequence