Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4662

Experiment: nitrate 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_4660 and PfGW456L13_4661 overlap by 4 nucleotidesPfGW456L13_4661 and PfGW456L13_4662 are separated by 75 nucleotidesPfGW456L13_4662 and PfGW456L13_4663 are separated by 219 nucleotides PfGW456L13_4660 - LysR family transcriptional regulator PA3398, at 5,200,818 to 5,201,687 _4660 PfGW456L13_4661 - Diacylglycerol kinase (EC 2.7.1.107), at 5,201,684 to 5,202,046 _4661 PfGW456L13_4662 - Transcriptional regulator, LuxR family, at 5,202,122 to 5,202,772 _4662 PfGW456L13_4663 - FIG074102: hypothetical protein, at 5,202,992 to 5,203,750 _4663 Position (kb) 5202 5203Strain fitness (log2 ratio) -2 -1 0 1 2at 5201.137 kb on + strand, within PfGW456L13_4660at 5201.137 kb on + strand, within PfGW456L13_4660at 5201.137 kb on + strand, within PfGW456L13_4660at 5201.137 kb on + strand, within PfGW456L13_4660at 5201.137 kb on + strand, within PfGW456L13_4660at 5201.138 kb on - strand, within PfGW456L13_4660at 5201.138 kb on - strand, within PfGW456L13_4660at 5201.138 kb on - strand, within PfGW456L13_4660at 5201.138 kb on - strand, within PfGW456L13_4660at 5201.138 kb on - strand, within PfGW456L13_4660at 5201.138 kb on - strand, within PfGW456L13_4660at 5201.138 kb on - strand, within PfGW456L13_4660at 5201.154 kb on - strand, within PfGW456L13_4660at 5201.175 kb on + strand, within PfGW456L13_4660at 5201.565 kb on + strand, within PfGW456L13_4660at 5201.565 kb on + strand, within PfGW456L13_4660at 5201.566 kb on - strand, within PfGW456L13_4660at 5201.579 kb on + strand, within PfGW456L13_4660at 5201.590 kb on - strand, within PfGW456L13_4660at 5201.590 kb on - strand, within PfGW456L13_4660at 5201.685 kb on + strandat 5201.855 kb on + strand, within PfGW456L13_4661at 5201.855 kb on + strand, within PfGW456L13_4661at 5201.855 kb on + strand, within PfGW456L13_4661at 5201.856 kb on - strand, within PfGW456L13_4661at 5201.933 kb on + strand, within PfGW456L13_4661at 5201.933 kb on + strand, within PfGW456L13_4661at 5201.933 kb on + strand, within PfGW456L13_4661at 5201.933 kb on + strand, within PfGW456L13_4661at 5201.933 kb on + strand, within PfGW456L13_4661at 5201.934 kb on - strand, within PfGW456L13_4661at 5201.934 kb on - strand, within PfGW456L13_4661at 5202.010 kb on + strandat 5202.011 kb on - strandat 5202.011 kb on - strandat 5202.011 kb on - strandat 5202.011 kb on - strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.082 kb on + strandat 5202.082 kb on + strandat 5202.082 kb on + strandat 5202.082 kb on + strandat 5202.083 kb on - strandat 5202.083 kb on - strandat 5202.083 kb on - strandat 5202.223 kb on + strand, within PfGW456L13_4662at 5202.223 kb on + strand, within PfGW456L13_4662at 5202.249 kb on + strand, within PfGW456L13_4662at 5202.724 kb on + strandat 5202.725 kb on - strandat 5202.763 kb on - strandat 5202.972 kb on + strandat 5202.973 kb on - strandat 5202.973 kb on - strandat 5202.981 kb on - strandat 5202.981 kb on - strandat 5203.023 kb on + strandat 5203.023 kb on + strandat 5203.023 kb on + strandat 5203.023 kb on + strandat 5203.023 kb on + strandat 5203.023 kb on + strandat 5203.023 kb on + strandat 5203.023 kb on + strandat 5203.024 kb on - strandat 5203.024 kb on - strandat 5203.024 kb on - strandat 5203.024 kb on - strandat 5203.024 kb on - strandat 5203.024 kb on - strandat 5203.089 kb on + strand, within PfGW456L13_4663at 5203.090 kb on - strand, within PfGW456L13_4663at 5203.090 kb on - strand, within PfGW456L13_4663at 5203.090 kb on - strand, within PfGW456L13_4663at 5203.090 kb on - strand, within PfGW456L13_4663at 5203.090 kb on - strand, within PfGW456L13_4663at 5203.113 kb on + strand, within PfGW456L13_4663at 5203.113 kb on + strand, within PfGW456L13_4663at 5203.114 kb on - strand, within PfGW456L13_4663at 5203.114 kb on - strand, within PfGW456L13_4663at 5203.114 kb on - strand, within PfGW456L13_4663at 5203.163 kb on + strand, within PfGW456L13_4663at 5203.164 kb on - strand, within PfGW456L13_4663at 5203.164 kb on - strand, within PfGW456L13_4663at 5203.164 kb on - strand, within PfGW456L13_4663at 5203.389 kb on + strand, within PfGW456L13_4663at 5203.389 kb on + strand, within PfGW456L13_4663at 5203.390 kb on - strand, within PfGW456L13_4663at 5203.390 kb on - strand, within PfGW456L13_4663at 5203.410 kb on + strand, within PfGW456L13_4663at 5203.410 kb on + strand, within PfGW456L13_4663at 5203.410 kb on + strand, within PfGW456L13_4663at 5203.411 kb on - strand, within PfGW456L13_4663at 5203.411 kb on - strand, within PfGW456L13_4663at 5203.411 kb on - strand, within PfGW456L13_4663at 5203.411 kb on - strand, within PfGW456L13_4663at 5203.411 kb on - strand, within PfGW456L13_4663at 5203.713 kb on - strandat 5203.741 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
remove
5,201,137 + PfGW456L13_4660 0.37 +0.0
5,201,137 + PfGW456L13_4660 0.37 +1.5
5,201,137 + PfGW456L13_4660 0.37 +1.5
5,201,137 + PfGW456L13_4660 0.37 +1.0
5,201,137 + PfGW456L13_4660 0.37 +0.5
5,201,138 - PfGW456L13_4660 0.37 -1.9
5,201,138 - PfGW456L13_4660 0.37 +0.0
5,201,138 - PfGW456L13_4660 0.37 +0.1
5,201,138 - PfGW456L13_4660 0.37 -0.0
5,201,138 - PfGW456L13_4660 0.37 -0.4
5,201,138 - PfGW456L13_4660 0.37 -0.3
5,201,138 - PfGW456L13_4660 0.37 -0.4
5,201,154 - PfGW456L13_4660 0.39 +0.4
5,201,175 + PfGW456L13_4660 0.41 -0.6
5,201,565 + PfGW456L13_4660 0.86 +0.6
5,201,565 + PfGW456L13_4660 0.86 -0.5
5,201,566 - PfGW456L13_4660 0.86 +0.4
5,201,579 + PfGW456L13_4660 0.87 -0.7
5,201,590 - PfGW456L13_4660 0.89 +0.5
5,201,590 - PfGW456L13_4660 0.89 +0.6
5,201,685 + +1.9
5,201,855 + PfGW456L13_4661 0.47 +0.1
5,201,855 + PfGW456L13_4661 0.47 +0.6
5,201,855 + PfGW456L13_4661 0.47 -0.7
5,201,856 - PfGW456L13_4661 0.47 +2.0
5,201,933 + PfGW456L13_4661 0.69 +0.2
5,201,933 + PfGW456L13_4661 0.69 -0.4
5,201,933 + PfGW456L13_4661 0.69 +0.3
5,201,933 + PfGW456L13_4661 0.69 +0.5
5,201,933 + PfGW456L13_4661 0.69 +1.5
5,201,934 - PfGW456L13_4661 0.69 -0.4
5,201,934 - PfGW456L13_4661 0.69 +1.2
5,202,010 + -0.5
5,202,011 - +0.5
5,202,011 - +1.2
5,202,011 - -0.9
5,202,011 - -0.2
5,202,046 + -2.4
5,202,046 + -0.2
5,202,046 + +0.6
5,202,046 + +0.7
5,202,046 + +0.6
5,202,046 + +1.1
5,202,046 + +1.3
5,202,046 + +0.6
5,202,046 + -0.2
5,202,046 + +0.4
5,202,046 + -0.0
5,202,046 + -0.0
5,202,046 + -0.4
5,202,047 - -1.3
5,202,047 - +0.4
5,202,047 - +0.3
5,202,047 - +1.3
5,202,047 - -1.0
5,202,047 - -0.6
5,202,047 - -0.0
5,202,047 - +0.1
5,202,047 - +0.8
5,202,047 - +0.7
5,202,047 - -0.4
5,202,047 - +0.4
5,202,047 - +0.1
5,202,047 - -1.0
5,202,047 - -0.2
5,202,082 + +0.2
5,202,082 + +0.4
5,202,082 + +0.7
5,202,082 + +0.1
5,202,083 - +1.3
5,202,083 - -0.2
5,202,083 - +0.4
5,202,223 + PfGW456L13_4662 0.16 -0.7
5,202,223 + PfGW456L13_4662 0.16 -2.6
5,202,249 + PfGW456L13_4662 0.20 +1.0
5,202,724 + -0.6
5,202,725 - +0.7
5,202,763 - -0.5
5,202,972 + -0.7
5,202,973 - -0.1
5,202,973 - -0.2
5,202,981 - +0.4
5,202,981 - +0.3
5,203,023 + +2.2
5,203,023 + +0.1
5,203,023 + -0.3
5,203,023 + -0.0
5,203,023 + +0.5
5,203,023 + -0.3
5,203,023 + +0.6
5,203,023 + -0.6
5,203,024 - -0.3
5,203,024 - +1.0
5,203,024 - -0.3
5,203,024 - -1.2
5,203,024 - -0.0
5,203,024 - +0.6
5,203,089 + PfGW456L13_4663 0.13 -0.7
5,203,090 - PfGW456L13_4663 0.13 +1.0
5,203,090 - PfGW456L13_4663 0.13 +0.7
5,203,090 - PfGW456L13_4663 0.13 -0.9
5,203,090 - PfGW456L13_4663 0.13 +0.0
5,203,090 - PfGW456L13_4663 0.13 +0.3
5,203,113 + PfGW456L13_4663 0.16 -0.9
5,203,113 + PfGW456L13_4663 0.16 -0.7
5,203,114 - PfGW456L13_4663 0.16 +0.4
5,203,114 - PfGW456L13_4663 0.16 -0.3
5,203,114 - PfGW456L13_4663 0.16 +1.2
5,203,163 + PfGW456L13_4663 0.23 -0.5
5,203,164 - PfGW456L13_4663 0.23 -0.4
5,203,164 - PfGW456L13_4663 0.23 -0.1
5,203,164 - PfGW456L13_4663 0.23 -0.2
5,203,389 + PfGW456L13_4663 0.52 -0.8
5,203,389 + PfGW456L13_4663 0.52 +0.0
5,203,390 - PfGW456L13_4663 0.52 +0.4
5,203,390 - PfGW456L13_4663 0.52 +0.2
5,203,410 + PfGW456L13_4663 0.55 +0.3
5,203,410 + PfGW456L13_4663 0.55 -0.2
5,203,410 + PfGW456L13_4663 0.55 -0.6
5,203,411 - PfGW456L13_4663 0.55 +0.3
5,203,411 - PfGW456L13_4663 0.55 -0.1
5,203,411 - PfGW456L13_4663 0.55 +2.0
5,203,411 - PfGW456L13_4663 0.55 +0.6
5,203,411 - PfGW456L13_4663 0.55 -0.0
5,203,713 - +1.2
5,203,741 + +0.4

Or see this region's nucleotide sequence