Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4639 and PfGW456L13_4640 are separated by 681 nucleotides PfGW456L13_4640 and PfGW456L13_4641 are separated by 107 nucleotides PfGW456L13_4641 and PfGW456L13_4642 are separated by 353 nucleotides PfGW456L13_4642 and PfGW456L13_4643 are separated by 149 nucleotides
PfGW456L13_4639 - Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1), at 5,176,947 to 5,177,711
_4639
PfGW456L13_4640 - FIG00955308: hypothetical protein, at 5,178,393 to 5,178,602
_4640
PfGW456L13_4641 - Deoxycytidine triphosphate deaminase (EC 3.5.4.13), at 5,178,710 to 5,179,276
_4641
PfGW456L13_4642 - Cold shock protein CspA, at 5,179,630 to 5,179,839
_4642
PfGW456L13_4643 - Peptide chain release factor RF-3, at 5,179,989 to 5,180,945
_4643
Position (kb)
5178
5179
5180 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5177.722 kb on + strand at 5177.722 kb on + strand at 5177.814 kb on + strand at 5177.875 kb on - strand at 5177.962 kb on + strand at 5177.962 kb on + strand at 5177.962 kb on + strand at 5177.962 kb on + strand at 5177.962 kb on + strand at 5177.962 kb on + strand at 5177.963 kb on - strand at 5177.963 kb on - strand at 5177.963 kb on - strand at 5177.963 kb on - strand at 5177.966 kb on + strand at 5177.966 kb on + strand at 5177.966 kb on + strand at 5177.967 kb on - strand at 5177.967 kb on - strand at 5177.967 kb on - strand at 5177.967 kb on - strand at 5177.992 kb on + strand at 5177.992 kb on + strand at 5177.992 kb on + strand at 5177.992 kb on + strand at 5177.992 kb on + strand at 5177.992 kb on + strand at 5177.993 kb on - strand at 5177.993 kb on - strand at 5177.998 kb on + strand at 5177.998 kb on + strand at 5177.998 kb on + strand at 5177.999 kb on - strand at 5177.999 kb on - strand at 5178.055 kb on + strand at 5178.056 kb on - strand at 5178.108 kb on + strand at 5178.109 kb on - strand at 5178.109 kb on - strand at 5178.124 kb on + strand at 5178.164 kb on + strand at 5178.175 kb on - strand at 5178.271 kb on + strand at 5178.271 kb on + strand at 5178.271 kb on + strand at 5178.271 kb on + strand at 5178.271 kb on + strand at 5178.272 kb on - strand at 5178.272 kb on - strand at 5178.272 kb on - strand at 5178.272 kb on - strand at 5178.272 kb on - strand at 5178.272 kb on - strand at 5178.272 kb on - strand at 5178.272 kb on - strand at 5178.431 kb on + strand, within PfGW456L13_4640 at 5178.431 kb on + strand, within PfGW456L13_4640 at 5178.449 kb on + strand, within PfGW456L13_4640 at 5178.449 kb on + strand, within PfGW456L13_4640 at 5178.652 kb on + strand at 5178.652 kb on + strand at 5178.652 kb on + strand at 5178.652 kb on + strand at 5178.653 kb on - strand at 5178.653 kb on - strand at 5178.653 kb on - strand at 5178.653 kb on - strand at 5178.653 kb on - strand at 5178.661 kb on + strand at 5178.661 kb on + strand at 5178.662 kb on - strand at 5178.668 kb on + strand at 5178.669 kb on - strand at 5178.669 kb on - strand at 5178.669 kb on - strand at 5178.748 kb on - strand at 5178.988 kb on - strand, within PfGW456L13_4641 at 5179.144 kb on - strand, within PfGW456L13_4641 at 5179.293 kb on - strand at 5179.383 kb on + strand at 5179.383 kb on + strand at 5179.383 kb on + strand at 5179.384 kb on - strand at 5179.384 kb on - strand at 5179.421 kb on + strand at 5179.473 kb on - strand at 5179.513 kb on + strand at 5179.513 kb on + strand at 5179.513 kb on + strand at 5179.521 kb on - strand at 5179.521 kb on - strand at 5179.521 kb on - strand at 5179.521 kb on - strand at 5179.545 kb on + strand at 5179.545 kb on + strand at 5179.607 kb on - strand at 5179.607 kb on - strand at 5179.612 kb on - strand at 5179.625 kb on - strand at 5179.625 kb on - strand at 5179.656 kb on + strand, within PfGW456L13_4642 at 5179.656 kb on + strand, within PfGW456L13_4642 at 5179.826 kb on + strand at 5179.833 kb on + strand at 5179.837 kb on + strand at 5179.837 kb on + strand at 5179.837 kb on + strand at 5179.844 kb on + strand at 5179.853 kb on + strand at 5179.857 kb on - strand at 5179.991 kb on - strand at 5179.991 kb on - strand at 5179.991 kb on - strand at 5180.017 kb on + strand at 5180.107 kb on + strand at 5180.107 kb on + strand at 5180.108 kb on - strand, within PfGW456L13_4643 at 5180.108 kb on - strand, within PfGW456L13_4643 at 5180.210 kb on - strand, within PfGW456L13_4643 at 5180.218 kb on + strand, within PfGW456L13_4643 at 5180.218 kb on + strand, within PfGW456L13_4643 at 5180.218 kb on + strand, within PfGW456L13_4643 at 5180.218 kb on + strand, within PfGW456L13_4643 at 5180.219 kb on - strand, within PfGW456L13_4643 at 5180.219 kb on - strand, within PfGW456L13_4643 at 5180.219 kb on - strand, within PfGW456L13_4643 at 5180.275 kb on + strand, within PfGW456L13_4643 at 5180.275 kb on + strand, within PfGW456L13_4643 at 5180.275 kb on + strand, within PfGW456L13_4643 at 5180.275 kb on + strand, within PfGW456L13_4643
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 5,177,722 + -0.3 5,177,722 + +0.3 5,177,814 + +0.7 5,177,875 - -0.3 5,177,962 + +0.6 5,177,962 + +1.0 5,177,962 + +1.0 5,177,962 + +0.4 5,177,962 + -0.2 5,177,962 + +0.8 5,177,963 - +1.1 5,177,963 - +1.1 5,177,963 - -2.2 5,177,963 - -0.0 5,177,966 + -0.2 5,177,966 + +0.6 5,177,966 + +0.8 5,177,967 - +1.0 5,177,967 - +0.1 5,177,967 - -1.0 5,177,967 - +0.1 5,177,992 + -0.3 5,177,992 + +0.2 5,177,992 + -0.4 5,177,992 + +0.3 5,177,992 + +0.6 5,177,992 + -0.3 5,177,993 - -1.2 5,177,993 - +0.1 5,177,998 + -0.8 5,177,998 + +0.1 5,177,998 + +0.7 5,177,999 - -0.8 5,177,999 - +0.8 5,178,055 + +0.6 5,178,056 - -0.7 5,178,108 + +0.4 5,178,109 - +0.8 5,178,109 - +0.6 5,178,124 + +0.7 5,178,164 + +1.0 5,178,175 - -1.6 5,178,271 + +0.7 5,178,271 + -0.2 5,178,271 + -0.0 5,178,271 + -0.8 5,178,271 + +0.0 5,178,272 - +0.9 5,178,272 - +1.3 5,178,272 - +0.3 5,178,272 - +1.6 5,178,272 - +1.0 5,178,272 - +0.8 5,178,272 - +1.1 5,178,272 - -0.0 5,178,431 + PfGW456L13_4640 0.18 +1.2 5,178,431 + PfGW456L13_4640 0.18 -0.5 5,178,449 + PfGW456L13_4640 0.27 -1.4 5,178,449 + PfGW456L13_4640 0.27 -0.3 5,178,652 + -0.6 5,178,652 + -0.2 5,178,652 + +0.8 5,178,652 + +0.1 5,178,653 - +0.1 5,178,653 - -0.4 5,178,653 - +1.0 5,178,653 - +0.1 5,178,653 - +0.7 5,178,661 + -0.6 5,178,661 + +0.6 5,178,662 - -0.2 5,178,668 + +0.7 5,178,669 - +2.0 5,178,669 - +1.1 5,178,669 - +1.1 5,178,748 - -0.0 5,178,988 - PfGW456L13_4641 0.49 -0.9 5,179,144 - PfGW456L13_4641 0.77 -0.4 5,179,293 - +1.4 5,179,383 + +2.2 5,179,383 + -1.2 5,179,383 + +1.3 5,179,384 - +1.3 5,179,384 - +0.5 5,179,421 + -0.4 5,179,473 - +2.2 5,179,513 + -1.0 5,179,513 + +1.1 5,179,513 + +1.0 5,179,521 - +0.8 5,179,521 - +2.1 5,179,521 - +1.2 5,179,521 - +2.2 5,179,545 + +1.2 5,179,545 + +1.0 5,179,607 - +1.1 5,179,607 - +2.3 5,179,612 - +1.3 5,179,625 - +1.6 5,179,625 - +1.8 5,179,656 + PfGW456L13_4642 0.12 +0.8 5,179,656 + PfGW456L13_4642 0.12 +1.4 5,179,826 + -1.4 5,179,833 + +1.1 5,179,837 + +1.3 5,179,837 + +2.0 5,179,837 + +1.8 5,179,844 + +1.3 5,179,853 + +1.4 5,179,857 - -0.6 5,179,991 - +1.6 5,179,991 - -0.4 5,179,991 - +0.4 5,180,017 + +0.5 5,180,107 + +2.0 5,180,107 + -0.6 5,180,108 - PfGW456L13_4643 0.12 +0.5 5,180,108 - PfGW456L13_4643 0.12 -1.4 5,180,210 - PfGW456L13_4643 0.23 +1.1 5,180,218 + PfGW456L13_4643 0.24 +1.0 5,180,218 + PfGW456L13_4643 0.24 +1.3 5,180,218 + PfGW456L13_4643 0.24 +0.6 5,180,218 + PfGW456L13_4643 0.24 -1.6 5,180,219 - PfGW456L13_4643 0.24 +0.6 5,180,219 - PfGW456L13_4643 0.24 +0.1 5,180,219 - PfGW456L13_4643 0.24 +0.8 5,180,275 + PfGW456L13_4643 0.30 +0.5 5,180,275 + PfGW456L13_4643 0.30 +0.6 5,180,275 + PfGW456L13_4643 0.30 +1.3 5,180,275 + PfGW456L13_4643 0.30 +1.1
Or see this region's nucleotide sequence