Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4055

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4054 and PfGW456L13_4055 are separated by 188 nucleotidesPfGW456L13_4055 and PfGW456L13_4056 are separated by 94 nucleotides PfGW456L13_4054 - Aerotaxis receptor Aer, at 4,552,426 to 4,554,018 _4054 PfGW456L13_4055 - Predicted hydrolase of the alpha/beta-hydrolase fold, at 4,554,207 to 4,554,884 _4055 PfGW456L13_4056 - Cytochrome c oxidase subunit CcoN (EC 1.9.3.1), at 4,554,979 to 4,556,403 _4056 Position (kb) 4554 4555Strain fitness (log2 ratio) -2 -1 0 1 2at 4553.447 kb on + strand, within PfGW456L13_4054at 4553.448 kb on - strand, within PfGW456L13_4054at 4553.817 kb on + strand, within PfGW456L13_4054at 4553.817 kb on + strandat 4553.817 kb on + strand, within PfGW456L13_4054at 4553.817 kb on + strand, within PfGW456L13_4054at 4553.817 kb on + strandat 4553.817 kb on + strand, within PfGW456L13_4054at 4553.818 kb on - strand, within PfGW456L13_4054at 4553.818 kb on - strand, within PfGW456L13_4054at 4553.982 kb on + strandat 4553.982 kb on + strandat 4553.982 kb on + strandat 4553.983 kb on - strandat 4553.983 kb on - strandat 4553.983 kb on - strandat 4553.983 kb on - strandat 4553.983 kb on - strandat 4553.989 kb on + strandat 4553.989 kb on + strandat 4553.989 kb on + strandat 4553.989 kb on + strandat 4553.989 kb on + strandat 4553.989 kb on + strandat 4553.990 kb on - strandat 4554.034 kb on + strandat 4554.034 kb on + strandat 4554.034 kb on + strandat 4554.035 kb on - strandat 4554.069 kb on - strandat 4554.263 kb on + strandat 4554.344 kb on - strand, within PfGW456L13_4055at 4554.460 kb on + strand, within PfGW456L13_4055at 4554.461 kb on - strand, within PfGW456L13_4055at 4554.461 kb on - strand, within PfGW456L13_4055at 4554.461 kb on - strand, within PfGW456L13_4055at 4554.461 kb on - strand, within PfGW456L13_4055at 4554.589 kb on + strand, within PfGW456L13_4055at 4554.589 kb on + strand, within PfGW456L13_4055at 4554.589 kb on + strand, within PfGW456L13_4055at 4554.589 kb on + strand, within PfGW456L13_4055at 4554.589 kb on + strand, within PfGW456L13_4055at 4554.590 kb on - strand, within PfGW456L13_4055at 4554.590 kb on - strand, within PfGW456L13_4055at 4554.590 kb on - strand, within PfGW456L13_4055at 4554.590 kb on - strand, within PfGW456L13_4055at 4554.590 kb on - strand, within PfGW456L13_4055at 4554.590 kb on - strand, within PfGW456L13_4055at 4554.590 kb on - strand, within PfGW456L13_4055at 4554.590 kb on - strand, within PfGW456L13_4055at 4554.590 kb on - strand, within PfGW456L13_4055at 4554.590 kb on - strand, within PfGW456L13_4055at 4554.642 kb on - strand, within PfGW456L13_4055at 4554.642 kb on - strandat 4554.670 kb on + strand, within PfGW456L13_4055at 4554.671 kb on - strand, within PfGW456L13_4055at 4554.671 kb on - strand, within PfGW456L13_4055at 4554.900 kb on - strandat 4554.900 kb on - strandat 4554.908 kb on + strandat 4554.908 kb on + strandat 4554.908 kb on + strandat 4554.908 kb on + strandat 4554.909 kb on - strandat 4554.909 kb on - strandat 4554.909 kb on - strandat 4554.910 kb on + strandat 4554.910 kb on + strandat 4554.910 kb on + strandat 4554.990 kb on + strandat 4554.990 kb on + strandat 4554.990 kb on + strandat 4554.990 kb on + strandat 4554.991 kb on - strandat 4554.991 kb on - strandat 4554.991 kb on - strandat 4554.991 kb on - strandat 4554.991 kb on - strandat 4554.991 kb on - strandat 4554.991 kb on - strandat 4555.003 kb on + strandat 4555.003 kb on + strandat 4555.004 kb on - strandat 4555.004 kb on - strandat 4555.004 kb on - strandat 4555.004 kb on - strandat 4555.009 kb on + strandat 4555.009 kb on + strandat 4555.010 kb on - strandat 4555.010 kb on - strandat 4555.010 kb on - strandat 4555.010 kb on - strandat 4555.010 kb on - strandat 4555.010 kb on - strandat 4555.010 kb on - strandat 4555.035 kb on + strandat 4555.036 kb on - strandat 4555.214 kb on - strand, within PfGW456L13_4056at 4555.214 kb on - strand, within PfGW456L13_4056at 4555.214 kb on - strand, within PfGW456L13_4056at 4555.328 kb on - strand, within PfGW456L13_4056at 4555.345 kb on + strand, within PfGW456L13_4056at 4555.346 kb on - strand, within PfGW456L13_4056at 4555.399 kb on + strand, within PfGW456L13_4056at 4555.400 kb on - strand, within PfGW456L13_4056at 4555.450 kb on + strand, within PfGW456L13_4056at 4555.450 kb on + strand, within PfGW456L13_4056at 4555.450 kb on + strand, within PfGW456L13_4056at 4555.450 kb on + strand, within PfGW456L13_4056at 4555.450 kb on + strand, within PfGW456L13_4056at 4555.450 kb on + strand, within PfGW456L13_4056at 4555.450 kb on + strand, within PfGW456L13_4056at 4555.451 kb on - strand, within PfGW456L13_4056at 4555.451 kb on - strand, within PfGW456L13_4056at 4555.451 kb on - strand, within PfGW456L13_4056at 4555.451 kb on - strand, within PfGW456L13_4056at 4555.451 kb on - strand, within PfGW456L13_4056at 4555.451 kb on - strand, within PfGW456L13_4056at 4555.451 kb on - strand, within PfGW456L13_4056at 4555.451 kb on - strand, within PfGW456L13_4056at 4555.451 kb on - strand, within PfGW456L13_4056at 4555.451 kb on - strand, within PfGW456L13_4056at 4555.451 kb on - strand, within PfGW456L13_4056at 4555.451 kb on - strand, within PfGW456L13_4056at 4555.458 kb on + strand, within PfGW456L13_4056at 4555.546 kb on + strand, within PfGW456L13_4056at 4555.556 kb on - strand, within PfGW456L13_4056at 4555.592 kb on - strand, within PfGW456L13_4056at 4555.607 kb on + strand, within PfGW456L13_4056at 4555.608 kb on - strand, within PfGW456L13_4056at 4555.645 kb on + strand, within PfGW456L13_4056at 4555.645 kb on + strand, within PfGW456L13_4056at 4555.645 kb on + strand, within PfGW456L13_4056at 4555.645 kb on + strand, within PfGW456L13_4056at 4555.645 kb on + strand, within PfGW456L13_4056at 4555.645 kb on + strand, within PfGW456L13_4056at 4555.645 kb on + strand, within PfGW456L13_4056at 4555.646 kb on - strand, within PfGW456L13_4056at 4555.646 kb on - strand, within PfGW456L13_4056at 4555.646 kb on - strand, within PfGW456L13_4056at 4555.646 kb on - strand, within PfGW456L13_4056at 4555.648 kb on + strand, within PfGW456L13_4056at 4555.648 kb on + strand, within PfGW456L13_4056at 4555.648 kb on + strand, within PfGW456L13_4056at 4555.648 kb on + strand, within PfGW456L13_4056at 4555.649 kb on - strand, within PfGW456L13_4056at 4555.649 kb on - strand, within PfGW456L13_4056at 4555.649 kb on - strand, within PfGW456L13_4056at 4555.649 kb on - strand, within PfGW456L13_4056at 4555.649 kb on - strand, within PfGW456L13_4056at 4555.681 kb on + strand, within PfGW456L13_4056at 4555.681 kb on + strand, within PfGW456L13_4056at 4555.681 kb on + strand, within PfGW456L13_4056at 4555.681 kb on + strand, within PfGW456L13_4056at 4555.681 kb on + strand, within PfGW456L13_4056at 4555.682 kb on - strand, within PfGW456L13_4056at 4555.682 kb on - strand, within PfGW456L13_4056at 4555.682 kb on - strand, within PfGW456L13_4056at 4555.682 kb on - strand, within PfGW456L13_4056at 4555.682 kb on - strand, within PfGW456L13_4056at 4555.682 kb on - strand, within PfGW456L13_4056at 4555.729 kb on + strand, within PfGW456L13_4056at 4555.729 kb on + strand, within PfGW456L13_4056at 4555.729 kb on + strand, within PfGW456L13_4056at 4555.729 kb on + strand, within PfGW456L13_4056at 4555.729 kb on + strand, within PfGW456L13_4056at 4555.729 kb on + strand, within PfGW456L13_4056at 4555.729 kb on + strand, within PfGW456L13_4056at 4555.729 kb on + strand, within PfGW456L13_4056at 4555.730 kb on - strand, within PfGW456L13_4056at 4555.730 kb on - strand, within PfGW456L13_4056at 4555.730 kb on - strand, within PfGW456L13_4056at 4555.759 kb on + strand, within PfGW456L13_4056at 4555.759 kb on + strand, within PfGW456L13_4056at 4555.760 kb on - strand, within PfGW456L13_4056at 4555.875 kb on + strand, within PfGW456L13_4056at 4555.875 kb on + strand, within PfGW456L13_4056at 4555.876 kb on - strand, within PfGW456L13_4056at 4555.876 kb on - strand, within PfGW456L13_4056

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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4,553,447 + PfGW456L13_4054 0.64 -0.4
4,553,448 - PfGW456L13_4054 0.64 +0.6
4,553,817 + PfGW456L13_4054 0.87 -1.1
4,553,817 + -2.2
4,553,817 + PfGW456L13_4054 0.87 -0.5
4,553,817 + PfGW456L13_4054 0.87 -0.4
4,553,817 + -0.2
4,553,817 + PfGW456L13_4054 0.87 -0.2
4,553,818 - PfGW456L13_4054 0.87 -0.5
4,553,818 - PfGW456L13_4054 0.87 +0.5
4,553,982 + -0.5
4,553,982 + -0.3
4,553,982 + +0.1
4,553,983 - +0.3
4,553,983 - -0.2
4,553,983 - -0.1
4,553,983 - -0.9
4,553,983 - -0.4
4,553,989 + -1.6
4,553,989 + -0.7
4,553,989 + -0.6
4,553,989 + -0.7
4,553,989 + -1.2
4,553,989 + -1.5
4,553,990 - +1.6
4,554,034 + -0.0
4,554,034 + -0.2
4,554,034 + +0.4
4,554,035 - +0.5
4,554,069 - +0.7
4,554,263 + -0.7
4,554,344 - PfGW456L13_4055 0.20 -1.2
4,554,460 + PfGW456L13_4055 0.37 -0.4
4,554,461 - PfGW456L13_4055 0.37 -0.8
4,554,461 - PfGW456L13_4055 0.37 -0.0
4,554,461 - PfGW456L13_4055 0.37 +0.4
4,554,461 - PfGW456L13_4055 0.37 -0.7
4,554,589 + PfGW456L13_4055 0.56 -1.0
4,554,589 + PfGW456L13_4055 0.56 -0.2
4,554,589 + PfGW456L13_4055 0.56 -1.4
4,554,589 + PfGW456L13_4055 0.56 +0.3
4,554,589 + PfGW456L13_4055 0.56 -0.4
4,554,590 - PfGW456L13_4055 0.56 -0.8
4,554,590 - PfGW456L13_4055 0.56 -2.0
4,554,590 - PfGW456L13_4055 0.56 -0.9
4,554,590 - PfGW456L13_4055 0.56 -0.2
4,554,590 - PfGW456L13_4055 0.56 +0.0
4,554,590 - PfGW456L13_4055 0.56 -0.3
4,554,590 - PfGW456L13_4055 0.56 -0.5
4,554,590 - PfGW456L13_4055 0.56 +0.4
4,554,590 - PfGW456L13_4055 0.56 -0.8
4,554,590 - PfGW456L13_4055 0.56 -0.0
4,554,642 - PfGW456L13_4055 0.64 -1.1
4,554,642 - -1.2
4,554,670 + PfGW456L13_4055 0.68 -0.7
4,554,671 - PfGW456L13_4055 0.68 -1.4
4,554,671 - PfGW456L13_4055 0.68 -0.1
4,554,900 - +0.5
4,554,900 - +0.2
4,554,908 + +0.2
4,554,908 + +1.1
4,554,908 + +0.4
4,554,908 + +0.6
4,554,909 - -0.4
4,554,909 - -0.9
4,554,909 - +0.6
4,554,910 + +0.9
4,554,910 + -0.4
4,554,910 + -0.7
4,554,990 + -1.2
4,554,990 + -1.1
4,554,990 + -0.1
4,554,990 + +1.4
4,554,991 - +0.5
4,554,991 - -0.1
4,554,991 - -0.7
4,554,991 - -0.0
4,554,991 - +0.6
4,554,991 - -0.7
4,554,991 - +0.6
4,555,003 + +0.4
4,555,003 + +0.8
4,555,004 - -0.8
4,555,004 - -0.1
4,555,004 - -0.1
4,555,004 - +0.2
4,555,009 + -1.2
4,555,009 + +0.5
4,555,010 - -0.2
4,555,010 - -0.5
4,555,010 - -0.5
4,555,010 - +2.4
4,555,010 - +1.4
4,555,010 - +0.3
4,555,010 - -0.3
4,555,035 + +0.1
4,555,036 - +0.5
4,555,214 - PfGW456L13_4056 0.16 -0.2
4,555,214 - PfGW456L13_4056 0.16 -0.6
4,555,214 - PfGW456L13_4056 0.16 +0.2
4,555,328 - PfGW456L13_4056 0.24 -0.0
4,555,345 + PfGW456L13_4056 0.26 -0.8
4,555,346 - PfGW456L13_4056 0.26 -0.0
4,555,399 + PfGW456L13_4056 0.29 +0.6
4,555,400 - PfGW456L13_4056 0.30 +0.4
4,555,450 + PfGW456L13_4056 0.33 +0.5
4,555,450 + PfGW456L13_4056 0.33 -0.1
4,555,450 + PfGW456L13_4056 0.33 -1.1
4,555,450 + PfGW456L13_4056 0.33 +1.5
4,555,450 + PfGW456L13_4056 0.33 -0.5
4,555,450 + PfGW456L13_4056 0.33 -0.7
4,555,450 + PfGW456L13_4056 0.33 -0.0
4,555,451 - PfGW456L13_4056 0.33 +0.9
4,555,451 - PfGW456L13_4056 0.33 +0.4
4,555,451 - PfGW456L13_4056 0.33 +0.4
4,555,451 - PfGW456L13_4056 0.33 -0.8
4,555,451 - PfGW456L13_4056 0.33 +0.2
4,555,451 - PfGW456L13_4056 0.33 -0.2
4,555,451 - PfGW456L13_4056 0.33 -1.7
4,555,451 - PfGW456L13_4056 0.33 +0.3
4,555,451 - PfGW456L13_4056 0.33 +0.0
4,555,451 - PfGW456L13_4056 0.33 -0.4
4,555,451 - PfGW456L13_4056 0.33 +0.0
4,555,451 - PfGW456L13_4056 0.33 +0.1
4,555,458 + PfGW456L13_4056 0.34 -0.1
4,555,546 + PfGW456L13_4056 0.40 +0.6
4,555,556 - PfGW456L13_4056 0.40 -0.4
4,555,592 - PfGW456L13_4056 0.43 -0.2
4,555,607 + PfGW456L13_4056 0.44 -0.5
4,555,608 - PfGW456L13_4056 0.44 +0.9
4,555,645 + PfGW456L13_4056 0.47 +0.6
4,555,645 + PfGW456L13_4056 0.47 +1.7
4,555,645 + PfGW456L13_4056 0.47 -0.4
4,555,645 + PfGW456L13_4056 0.47 -1.0
4,555,645 + PfGW456L13_4056 0.47 +0.1
4,555,645 + PfGW456L13_4056 0.47 -0.9
4,555,645 + PfGW456L13_4056 0.47 -0.7
4,555,646 - PfGW456L13_4056 0.47 +0.7
4,555,646 - PfGW456L13_4056 0.47 +0.5
4,555,646 - PfGW456L13_4056 0.47 +1.5
4,555,646 - PfGW456L13_4056 0.47 +0.3
4,555,648 + PfGW456L13_4056 0.47 -0.7
4,555,648 + PfGW456L13_4056 0.47 +0.5
4,555,648 + PfGW456L13_4056 0.47 -0.6
4,555,648 + PfGW456L13_4056 0.47 -1.2
4,555,649 - PfGW456L13_4056 0.47 -1.2
4,555,649 - PfGW456L13_4056 0.47 +0.8
4,555,649 - PfGW456L13_4056 0.47 -0.6
4,555,649 - PfGW456L13_4056 0.47 -0.2
4,555,649 - PfGW456L13_4056 0.47 -0.2
4,555,681 + PfGW456L13_4056 0.49 -1.2
4,555,681 + PfGW456L13_4056 0.49 +0.8
4,555,681 + PfGW456L13_4056 0.49 -0.1
4,555,681 + PfGW456L13_4056 0.49 -0.6
4,555,681 + PfGW456L13_4056 0.49 +0.3
4,555,682 - PfGW456L13_4056 0.49 -0.8
4,555,682 - PfGW456L13_4056 0.49 +0.3
4,555,682 - PfGW456L13_4056 0.49 -1.1
4,555,682 - PfGW456L13_4056 0.49 -1.0
4,555,682 - PfGW456L13_4056 0.49 +0.6
4,555,682 - PfGW456L13_4056 0.49 +0.1
4,555,729 + PfGW456L13_4056 0.53 -0.7
4,555,729 + PfGW456L13_4056 0.53 +0.1
4,555,729 + PfGW456L13_4056 0.53 +0.3
4,555,729 + PfGW456L13_4056 0.53 -0.6
4,555,729 + PfGW456L13_4056 0.53 +1.0
4,555,729 + PfGW456L13_4056 0.53 -1.1
4,555,729 + PfGW456L13_4056 0.53 +0.4
4,555,729 + PfGW456L13_4056 0.53 -0.2
4,555,730 - PfGW456L13_4056 0.53 +0.8
4,555,730 - PfGW456L13_4056 0.53 -0.0
4,555,730 - PfGW456L13_4056 0.53 +0.3
4,555,759 + PfGW456L13_4056 0.55 -0.0
4,555,759 + PfGW456L13_4056 0.55 -0.2
4,555,760 - PfGW456L13_4056 0.55 -0.1
4,555,875 + PfGW456L13_4056 0.63 -0.4
4,555,875 + PfGW456L13_4056 0.63 +0.1
4,555,876 - PfGW456L13_4056 0.63 -1.0
4,555,876 - PfGW456L13_4056 0.63 +0.9

Or see this region's nucleotide sequence