Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4006

Experiment: nitrate 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 200 mM
4,494,947	+		PfGW456L13_4004	0.79	+0.4
4,494,988	+				-1.2
4,494,988	+		PfGW456L13_4004	0.81	-0.2
4,494,988	+		PfGW456L13_4004	0.81	+0.0
4,494,989	-		PfGW456L13_4004	0.81	+0.1
4,495,018	+		PfGW456L13_4004	0.82	+0.1
4,495,018	+		PfGW456L13_4004	0.82	-0.0
4,495,018	+		PfGW456L13_4004	0.82	+0.0
4,495,018	+		PfGW456L13_4004	0.82	+0.9
4,495,018	+		PfGW456L13_4004	0.82	+0.8
4,495,018	+		PfGW456L13_4004	0.82	+0.2
4,495,018	+		PfGW456L13_4004	0.82	-0.4
4,495,018	+		PfGW456L13_4004	0.82	+1.0
4,495,018	+		PfGW456L13_4004	0.82	+0.9
4,495,018	+		PfGW456L13_4004	0.82	-0.1
4,495,018	+		PfGW456L13_4004	0.82	-0.3
4,495,018	+		PfGW456L13_4004	0.82	-0.2
4,495,018	+		PfGW456L13_4004	0.82	+0.8
4,495,019	-		PfGW456L13_4004	0.82	+0.4
4,495,019	-		PfGW456L13_4004	0.82	+0.4
4,495,019	-		PfGW456L13_4004	0.82	+1.0
4,495,019	-		PfGW456L13_4004	0.82	+0.6
4,495,019	-		PfGW456L13_4004	0.82	+1.1
4,495,019	-		PfGW456L13_4004	0.82	+0.5
4,495,066	+		PfGW456L13_4004	0.85	+1.2
4,495,067	-		PfGW456L13_4004	0.85	+0.9
4,495,182	+				-0.3
4,495,182	+				+0.7
4,495,182	+				+0.0
4,495,182	+				+0.4
4,495,197	+				+0.7
4,495,197	+				+2.0
4,495,197	+				+1.0
4,495,197	+				-0.1
4,495,197	+				+0.9
4,495,197	+				+0.3
4,495,197	+				+0.3
4,495,197	+				-1.1
4,495,197	+				-0.2
4,495,197	+				+0.7
4,495,197	+				-1.2
4,495,197	+				-0.2
4,495,197	+				-0.7
4,495,197	+				+1.4
4,495,197	+				-0.3
4,495,197	+				-0.5
4,495,197	+				+0.3
4,495,197	+				+0.3
4,495,198	-				-0.1
4,495,198	-				-0.3
4,495,198	-				+0.1
4,495,198	-				+0.8
4,495,198	-				+0.9
4,495,198	-				+4.1
4,495,201	+				-0.0
4,495,201	+				-0.6
4,495,201	+				+0.6
4,495,201	+				+1.0
4,495,201	+				-0.7
4,495,201	+				-0.1
4,495,201	+				-0.7
4,495,201	+				+0.8
4,495,201	+				+1.2
4,495,201	+				-0.6
4,495,201	+				+0.0
4,495,201	+				-0.4
4,495,201	+				+1.4
4,495,201	+				-0.3
4,495,201	+				+0.2
4,495,201	+				+0.1
4,495,201	+				-0.1
4,495,201	+				+0.2
4,495,201	+				+0.3
4,495,201	+				-2.4
4,495,201	+				+0.1
4,495,201	+				+0.3
4,495,201	+				-0.5
4,495,202	-				-0.2
4,495,202	-				+1.6
4,495,202	-				-0.0
4,495,202	-				+1.4
4,495,202	-				+1.4
4,495,202	-				+0.7
4,495,202	-				+1.4
4,495,203	+				+0.0
4,495,203	+				+2.1
4,495,203	+				-0.0
4,495,203	+				+0.8
4,495,204	-				-0.3
4,495,318	+				+1.5
4,495,318	+				+0.1
4,495,318	+				-0.1
4,495,318	+				+0.6
4,495,354	+				-0.7
4,495,354	+				+0.8
4,495,354	+				+1.1
4,495,355	-				+1.5
4,495,355	-				+0.4
4,495,355	-				+0.4
4,495,356	+				+0.8
4,495,459	+		PfGW456L13_4005	0.20	+1.0
4,495,459	+		PfGW456L13_4005	0.20	+0.9
4,495,459	+		PfGW456L13_4005	0.20	+0.4
4,495,460	-		PfGW456L13_4005	0.21	+0.5
4,495,554	-		PfGW456L13_4005	0.45	+1.3
4,495,632	+		PfGW456L13_4005	0.65	+0.3
4,495,633	-		PfGW456L13_4005	0.65	+1.9
4,495,633	-		PfGW456L13_4005	0.65	+0.7
4,495,671	+		PfGW456L13_4005	0.75	+0.1
4,495,671	+		PfGW456L13_4005	0.75	+0.5
4,495,671	+		PfGW456L13_4005	0.75	+0.9
4,495,671	+		PfGW456L13_4005	0.75	+0.1
4,495,672	-		PfGW456L13_4005	0.75	+1.7
4,495,672	-		PfGW456L13_4005	0.75	+1.2
4,495,727	+		PfGW456L13_4005	0.89	+0.7
4,495,727	+		PfGW456L13_4005	0.89	+0.2
4,495,727	+		PfGW456L13_4005	0.89	+1.2
4,495,727	+		PfGW456L13_4005	0.89	-0.2
4,495,727	+		PfGW456L13_4005	0.89	-0.6
4,495,728	-		PfGW456L13_4005	0.89	+0.2
4,495,728	-		PfGW456L13_4005	0.89	-1.6
4,495,728	-		PfGW456L13_4005	0.89	+1.8
4,495,728	-		PfGW456L13_4005	0.89	-1.7
4,495,728	-		PfGW456L13_4005	0.89	+1.0
4,495,728	-		PfGW456L13_4005	0.89	+1.1
4,495,767	+				+1.2
4,495,767	+				+1.1
4,495,767	+				+1.5
4,495,767	+				+0.5
4,495,767	+				+1.2
4,495,768	-				+1.3
4,495,768	-				+1.9
4,495,768	-				+1.4
4,495,768	-				-0.6
4,495,768	-				+1.7
4,495,768	-				-0.1
4,495,768	-				+1.3
4,495,768	-				+0.5
4,495,794	-				+1.0
4,495,794	-				+1.9
4,495,794	-				+0.7
4,495,794	-				+1.4
4,495,794	-				+0.1
4,495,813	+				+0.2
4,495,813	+				+1.2
4,495,814	-				+0.8
4,495,814	-				+1.8
4,495,814	-				+0.7
4,495,817	+				+0.8
4,495,817	+				+1.1
4,495,818	-				+0.2
4,495,834	+				+1.5
4,495,834	+				+1.2
4,495,834	+				+1.0
4,495,835	-				+1.2
4,495,835	-				+0.7
4,495,835	-				+0.1
4,495,835	-				+1.8
4,495,835	-				+0.9
4,495,866	+				+1.7
4,495,866	+				+0.3
4,495,867	-				+2.0
4,495,867	-				+1.0
4,495,868	+				+0.7
4,495,868	+				+0.5
4,495,868	+				+1.3
4,495,868	+				-0.4
4,495,868	+				+1.4
4,495,868	+				+1.8
4,495,868	+				+0.4
4,495,868	+				+1.1
4,495,868	+				+1.0
4,495,868	+				+0.8
4,495,868	+				+0.2
4,495,869	-				+1.2
4,495,869	-				+1.3
4,495,869	-				+0.5
4,495,869	-				+0.7
4,495,869	-				+2.3
4,495,869	-				+1.1
4,495,869	-				+0.5
4,495,891	+				+2.1
4,495,891	+				+1.1
4,495,891	+				+1.6
4,495,891	+				+1.4
4,495,891	+				+1.5
4,495,892	-				+1.4
4,495,892	-				+1.1
4,495,892	-				+2.8
4,495,892	-				+1.4
4,495,892	-				-1.6
4,495,901	-				+1.8
4,495,908	+				+1.4
4,495,908	+				+1.3
4,495,909	-				+1.3
4,496,099	+		PfGW456L13_4006	0.25	+1.9
4,496,100	-		PfGW456L13_4006	0.25	-2.0
4,496,100	-		PfGW456L13_4006	0.25	+2.0
4,496,125	+		PfGW456L13_4006	0.28	+1.1
4,496,141	+		PfGW456L13_4006	0.30	-0.8
4,496,141	+		PfGW456L13_4006	0.30	+1.9
4,496,141	+		PfGW456L13_4006	0.30	+1.0
4,496,141	+		PfGW456L13_4006	0.30	+1.5
4,496,141	+		PfGW456L13_4006	0.30	+1.6
4,496,141	+		PfGW456L13_4006	0.30	+1.9
4,496,141	+		PfGW456L13_4006	0.30	+1.3
4,496,141	+		PfGW456L13_4006	0.30	+2.0
4,496,141	+		PfGW456L13_4006	0.30	+1.8
4,496,141	+		PfGW456L13_4006	0.30	+0.7
4,496,141	+		PfGW456L13_4006	0.30	+2.2
4,496,141	+		PfGW456L13_4006	0.30	+1.5
4,496,142	-		PfGW456L13_4006	0.30	+1.8
4,496,142	-		PfGW456L13_4006	0.30	+1.7
4,496,186	+		PfGW456L13_4006	0.35	+1.2
4,496,186	+		PfGW456L13_4006	0.35	+1.7
4,496,186	+		PfGW456L13_4006	0.35	+1.8
4,496,187	-		PfGW456L13_4006	0.35	+0.5
4,496,187	-		PfGW456L13_4006	0.35	+2.6
4,496,336	+		PfGW456L13_4006	0.53	+2.0
4,496,336	+		PfGW456L13_4006	0.53	+0.3
4,496,336	+		PfGW456L13_4006	0.53	+1.1
4,496,336	+		PfGW456L13_4006	0.53	+0.9
4,496,336	+		PfGW456L13_4006	0.53	+1.4
4,496,336	+		PfGW456L13_4006	0.53	+3.0
4,496,337	-		PfGW456L13_4006	0.53	+2.8
4,496,337	-		PfGW456L13_4006	0.53	+1.1
4,496,337	-		PfGW456L13_4006	0.53	+1.8
4,496,337	-		PfGW456L13_4006	0.53	+0.3
4,496,337	-		PfGW456L13_4006	0.53	+1.8
4,496,338	+		PfGW456L13_4006	0.53	+1.2
4,496,338	+		PfGW456L13_4006	0.53	+0.9
4,496,338	+		PfGW456L13_4006	0.53	+2.3
4,496,338	+		PfGW456L13_4006	0.53	+1.1
4,496,338	+		PfGW456L13_4006	0.53	+2.3
4,496,339	-		PfGW456L13_4006	0.54	+1.6
4,496,339	-		PfGW456L13_4006	0.54	+0.1
4,496,339	-		PfGW456L13_4006	0.54	+0.8
4,496,399	+		PfGW456L13_4006	0.61	+1.3
4,496,399	+		PfGW456L13_4006	0.61	+1.3
4,496,400	-		PfGW456L13_4006	0.61	+0.4
4,496,400	-		PfGW456L13_4006	0.61	+1.0
4,496,434	+		PfGW456L13_4006	0.65	+2.9
4,496,434	+		PfGW456L13_4006	0.65	+2.6
4,496,434	+		PfGW456L13_4006	0.65	+1.5
4,496,434	+		PfGW456L13_4006	0.65	+2.1
4,496,434	+		PfGW456L13_4006	0.65	+1.6
4,496,434	+		PfGW456L13_4006	0.65	+1.0
4,496,435	-		PfGW456L13_4006	0.65	-1.4
4,496,435	-		PfGW456L13_4006	0.65	-0.3
4,496,435	-		PfGW456L13_4006	0.65	+1.6
4,496,447	-		PfGW456L13_4006	0.67	-0.6
4,496,500	+		PfGW456L13_4006	0.73	+1.5
4,496,500	+		PfGW456L13_4006	0.73	+1.6
4,496,501	-		PfGW456L13_4006	0.73	+0.6
4,496,510	+		PfGW456L13_4006	0.74	+2.3
4,496,511	-				+1.4
4,496,627	+		PfGW456L13_4006	0.88	+1.4
4,496,627	+		PfGW456L13_4006	0.88	+0.5
4,496,627	+		PfGW456L13_4006	0.88	+1.5
4,496,628	+		PfGW456L13_4006	0.88	+1.6
4,496,628	-		PfGW456L13_4006	0.88	+2.5
4,496,628	-		PfGW456L13_4006	0.88	+0.8
4,496,628	-		PfGW456L13_4006	0.88	+0.3
4,496,672	+				+1.3
4,496,672	+				+1.2
4,496,672	+				+2.0
4,496,672	+				+1.5
4,496,672	+				+2.6
4,496,672	+				+1.5
4,496,673	-				+0.5
4,496,673	-				+1.4
4,496,708	+				+1.4
4,496,710	+				+1.3
4,496,710	+				+1.1
4,496,710	+				+0.7
4,496,723	+				+2.2
4,496,827	+				+0.4
4,496,827	+				-0.5
4,496,827	+				+1.5
4,496,829	+				+0.4
4,496,830	-				+0.1
4,496,921	-				+1.4
4,496,921	-				+2.1
4,496,940	+				+0.3
4,496,940	+				+0.5
4,496,941	-				+0.6
4,497,055	+				+1.8
4,497,056	-				+0.8
4,497,056	-				-0.1
4,497,063	+				+1.4
4,497,077	+		PfGW456L13_4007	0.12	+0.6
4,497,078	-		PfGW456L13_4007	0.13	+0.2
4,497,078	-		PfGW456L13_4007	0.13	-0.6
4,497,095	+		PfGW456L13_4007	0.21	-0.7
4,497,096	-		PfGW456L13_4007	0.22	+0.8
4,497,243	+				+0.4
4,497,244	-				+1.4
4,497,254	-				+1.6
4,497,295	+				+0.8
4,497,295	+				+1.2
4,497,296	-				+0.7
4,497,296	-				-0.3
4,497,296	-				+0.1
4,497,296	-				+0.8
4,497,320	+				-0.8
4,497,338	+				+1.2
4,497,338	+				+2.9
4,497,338	+				+0.5
4,497,338	+				+1.6
4,497,338	+				+1.0
4,497,338	+				+0.8
4,497,338	+				+1.0
4,497,339	-				+2.2
4,497,339	-				+2.2
4,497,339	-				+1.7
4,497,339	-				+1.9
4,497,339	-				+2.2
4,497,339	-				+1.7
4,497,339	-				+2.2
4,497,339	-				+2.4
4,497,401	-				+0.8
4,497,401	-				+2.1
4,497,401	-				+1.4
4,497,423	+				+1.5
4,497,423	+				+2.9
4,497,423	-				+0.7
4,497,574	+				+2.1
4,497,574	+				+2.3
4,497,600	+				+1.9
4,497,667	-				+0.6
4,497,667	-				+1.7