Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3997

Experiment: nitrate 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_3996 and PfGW456L13_3997 are separated by 161 nucleotidesPfGW456L13_3997 and PfGW456L13_3998 overlap by 47 nucleotides PfGW456L13_3996 - UDP-glucose dehydrogenase (EC 1.1.1.22), at 4,484,547 to 4,485,815 _3996 PfGW456L13_3997 - hypothetical protein, at 4,485,977 to 4,487,410 _3997 PfGW456L13_3998 - membrane protein, putative, at 4,487,364 to 4,488,539 _3998 Position (kb) 4485 4486 4487 4488Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4485.028 kb on + strand, within PfGW456L13_3996at 4485.092 kb on + strand, within PfGW456L13_3996at 4485.397 kb on + strandat 4485.429 kb on - strand, within PfGW456L13_3996at 4485.446 kb on - strandat 4485.673 kb on + strand, within PfGW456L13_3996at 4485.737 kb on + strandat 4486.076 kb on + strandat 4486.248 kb on - strand, within PfGW456L13_3997at 4486.504 kb on - strand, within PfGW456L13_3997at 4486.507 kb on - strand, within PfGW456L13_3997at 4486.777 kb on - strand, within PfGW456L13_3997at 4486.825 kb on - strand, within PfGW456L13_3997at 4486.951 kb on + strand, within PfGW456L13_3997at 4487.005 kb on + strand, within PfGW456L13_3997at 4487.005 kb on + strand, within PfGW456L13_3997at 4487.162 kb on - strand, within PfGW456L13_3997at 4487.194 kb on + strand, within PfGW456L13_3997at 4487.195 kb on - strand, within PfGW456L13_3997at 4487.262 kb on + strand, within PfGW456L13_3997at 4487.269 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
remove
4,485,028 + PfGW456L13_3996 0.38 -1.2
4,485,092 + PfGW456L13_3996 0.43 -4.8
4,485,397 + +0.8
4,485,429 - PfGW456L13_3996 0.70 -3.0
4,485,446 - +0.3
4,485,673 + PfGW456L13_3996 0.89 -2.3
4,485,737 + -4.1
4,486,076 + -0.2
4,486,248 - PfGW456L13_3997 0.19 -0.6
4,486,504 - PfGW456L13_3997 0.37 +0.3
4,486,507 - PfGW456L13_3997 0.37 -2.7
4,486,777 - PfGW456L13_3997 0.56 -2.2
4,486,825 - PfGW456L13_3997 0.59 -1.4
4,486,951 + PfGW456L13_3997 0.68 -1.7
4,487,005 + PfGW456L13_3997 0.72 -3.1
4,487,005 + PfGW456L13_3997 0.72 -2.6
4,487,162 - PfGW456L13_3997 0.83 -2.7
4,487,194 + PfGW456L13_3997 0.85 -3.1
4,487,195 - PfGW456L13_3997 0.85 -0.8
4,487,262 + PfGW456L13_3997 0.90 -1.6
4,487,269 + -1.5

Or see this region's nucleotide sequence