Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3994

Experiment: nitrate 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 200 mM
4,479,832	+				-0.5
4,479,833	-				+0.0
4,479,886	+				-0.7
4,479,899	-				-1.1
4,479,982	+				-0.9
4,480,002	-				-1.6
4,480,093	-				-2.6
4,480,170	+				-0.0
4,480,171	-				-2.9
4,480,201	+				+0.6
4,480,402	-				-2.2
4,480,424	+		PfGW456L13_3993	0.15	-0.8
4,480,424	+		PfGW456L13_3993	0.15	-0.4
4,480,460	+		PfGW456L13_3993	0.25	-0.1
4,480,461	-		PfGW456L13_3993	0.25	-0.8
4,480,461	-		PfGW456L13_3993	0.25	-0.7
4,480,565	+		PfGW456L13_3993	0.53	+0.5
4,480,565	+		PfGW456L13_3993	0.53	-2.3
4,480,566	-		PfGW456L13_3993	0.53	-2.1
4,480,566	-		PfGW456L13_3993	0.53	-1.8
4,480,566	-		PfGW456L13_3993	0.53	-2.8
4,480,687	+		PfGW456L13_3993	0.86	-1.7
4,480,687	+		PfGW456L13_3993	0.86	-2.1
4,480,687	+		PfGW456L13_3993	0.86	-2.1
4,480,688	-		PfGW456L13_3993	0.86	-2.9
4,480,688	-		PfGW456L13_3993	0.86	-2.9
4,480,755	-				-1.6
4,480,777	+				-1.5
4,480,777	+				-0.7
4,480,778	-				-0.8
4,480,778	-				-2.1
4,480,778	-				-2.8
4,480,778	-				-1.2
4,480,859	-				-1.0
4,480,891	+				-1.3
4,480,891	+				-2.1
4,480,891	+				-3.0
4,480,910	+				-1.9
4,480,935	-				-1.4
4,480,954	-				-2.6
4,480,980	+				-1.5
4,481,046	+				-2.9
4,481,072	-		PfGW456L13_3994	0.11	-0.2
4,481,088	+		PfGW456L13_3994	0.12	-2.1
4,481,140	+		PfGW456L13_3994	0.14	-1.6
4,481,235	+		PfGW456L13_3994	0.19	-2.0
4,481,364	-		PfGW456L13_3994	0.25	+0.9
4,481,364	-		PfGW456L13_3994	0.25	-1.8
4,481,364	-		PfGW456L13_3994	0.25	-0.9
4,481,380	+		PfGW456L13_3994	0.25	-1.0
4,481,407	+		PfGW456L13_3994	0.27	-0.4
4,481,416	+		PfGW456L13_3994	0.27	-2.0
4,481,416	+		PfGW456L13_3994	0.27	-2.4
4,481,417	-		PfGW456L13_3994	0.27	-0.2
4,481,455	+		PfGW456L13_3994	0.29	-1.0
4,481,465	+		PfGW456L13_3994	0.29	-1.9
4,481,475	+				-0.2
4,481,484	+		PfGW456L13_3994	0.30	-1.4
4,481,484	+		PfGW456L13_3994	0.30	-1.6
4,481,485	-		PfGW456L13_3994	0.30	-4.0
4,481,485	-		PfGW456L13_3994	0.30	-3.2
4,481,582	+		PfGW456L13_3994	0.35	-1.8
4,481,582	+		PfGW456L13_3994	0.35	-2.2
4,481,582	+		PfGW456L13_3994	0.35	-0.8
4,481,582	+		PfGW456L13_3994	0.35	-2.0
4,481,583	-		PfGW456L13_3994	0.35	-0.7
4,481,717	-		PfGW456L13_3994	0.41	-2.9
4,481,717	-		PfGW456L13_3994	0.41	-1.5
4,481,827	+		PfGW456L13_3994	0.46	-2.6
4,481,944	+		PfGW456L13_3994	0.51	+0.2
4,481,961	+		PfGW456L13_3994	0.52	-1.8
4,481,961	+		PfGW456L13_3994	0.52	-2.8
4,481,961	+		PfGW456L13_3994	0.52	-1.4
4,481,982	-		PfGW456L13_3994	0.53	-1.6
4,481,982	-		PfGW456L13_3994	0.53	-1.6
4,481,998	+		PfGW456L13_3994	0.54	-0.7
4,481,998	+		PfGW456L13_3994	0.54	-0.2
4,482,018	+		PfGW456L13_3994	0.55	-1.3
4,482,018	+		PfGW456L13_3994	0.55	-2.9
4,482,018	+		PfGW456L13_3994	0.55	-4.4
4,482,018	+		PfGW456L13_3994	0.55	-1.6
4,482,018	+		PfGW456L13_3994	0.55	-2.2
4,482,018	+		PfGW456L13_3994	0.55	-1.4
4,482,019	-		PfGW456L13_3994	0.55	-1.7
4,482,019	-		PfGW456L13_3994	0.55	-3.1
4,482,019	-		PfGW456L13_3994	0.55	-1.7
4,482,019	-		PfGW456L13_3994	0.55	-1.6
4,482,019	-		PfGW456L13_3994	0.55	-2.6
4,482,019	-		PfGW456L13_3994	0.55	-1.6
4,482,019	-		PfGW456L13_3994	0.55	-1.3
4,482,019	-		PfGW456L13_3994	0.55	-2.7
4,482,019	-		PfGW456L13_3994	0.55	-1.8
4,482,227	+		PfGW456L13_3994	0.64	-1.2
4,482,227	+		PfGW456L13_3994	0.64	-1.6
4,482,228	-		PfGW456L13_3994	0.64	-2.8
4,482,318	+		PfGW456L13_3994	0.68	-0.9
4,482,351	+		PfGW456L13_3994	0.70	-1.1
4,482,351	+		PfGW456L13_3994	0.70	-1.6
4,482,351	+		PfGW456L13_3994	0.70	-0.6
4,482,352	-		PfGW456L13_3994	0.70	-1.0
4,482,352	-		PfGW456L13_3994	0.70	-3.0
4,482,409	+		PfGW456L13_3994	0.73	-0.4
4,482,409	+		PfGW456L13_3994	0.73	-0.8
4,482,444	+		PfGW456L13_3994	0.74	-0.7
4,482,444	+		PfGW456L13_3994	0.74	-1.7
4,482,444	+		PfGW456L13_3994	0.74	-0.8
4,482,445	-		PfGW456L13_3994	0.74	-1.8
4,482,448	+		PfGW456L13_3994	0.74	-0.8
4,482,448	+		PfGW456L13_3994	0.74	-1.4
4,482,448	+		PfGW456L13_3994	0.74	-0.7
4,482,448	+		PfGW456L13_3994	0.74	+0.2
4,482,448	+		PfGW456L13_3994	0.74	-2.8
4,482,448	+		PfGW456L13_3994	0.74	-1.1
4,482,448	+		PfGW456L13_3994	0.74	-1.0
4,482,449	-		PfGW456L13_3994	0.74	-1.6
4,482,536	+		PfGW456L13_3994	0.78	-0.8
4,482,537	-		PfGW456L13_3994	0.79	+0.1
4,482,544	+		PfGW456L13_3994	0.79	-1.4
4,482,544	+		PfGW456L13_3994	0.79	-0.7
4,482,544	+		PfGW456L13_3994	0.79	-0.9
4,482,545	-		PfGW456L13_3994	0.79	+0.0
4,482,585	+		PfGW456L13_3994	0.81	+0.4
4,482,622	+		PfGW456L13_3994	0.82	+0.8
4,482,666	+		PfGW456L13_3994	0.84	-2.3
4,482,666	+		PfGW456L13_3994	0.84	+0.5
4,482,691	-		PfGW456L13_3994	0.86	-1.4
4,482,747	+		PfGW456L13_3994	0.88	-0.1
4,482,748	-		PfGW456L13_3994	0.88	-1.4
4,482,947	+				-1.2
4,482,978	-				-1.9
4,483,001	+				+0.3
4,483,020	+				+0.6
4,483,044	+				+0.2
4,483,044	+				+0.1
4,483,187	+				-0.1
4,483,187	+				+1.5
4,483,187	+				+0.2
4,483,187	+				+0.0
4,483,216	+				+0.3
4,483,217	-				+0.9
4,483,315	+				+0.1
4,483,315	+				-0.2
4,483,323	+				+0.3
4,483,323	+				+0.3
4,483,323	+				-1.9
4,483,324	-				-2.0
4,483,324	-				-2.6
4,483,324	-				-2.4
4,483,339	+				-1.9
4,483,340	-				-3.8
4,483,350	+				-3.0
4,483,351	-				-1.1
4,483,381	+				-1.0
4,483,381	+				-2.1
4,483,476	+		PfGW456L13_3995	0.12	-1.6
4,483,476	+		PfGW456L13_3995	0.12	-2.3
4,483,659	-		PfGW456L13_3995	0.29	-2.4
4,483,659	-		PfGW456L13_3995	0.29	-2.2
4,483,662	-		PfGW456L13_3995	0.29	-1.9
4,483,662	-		PfGW456L13_3995	0.29	-1.6
4,483,715	+		PfGW456L13_3995	0.34	-2.1
4,483,716	-		PfGW456L13_3995	0.34	-1.0
4,483,716	-		PfGW456L13_3995	0.34	-2.0
4,483,716	-		PfGW456L13_3995	0.34	-2.9