Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2857

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2856 and PfGW456L13_2857 are separated by 119 nucleotidesPfGW456L13_2857 and PfGW456L13_2858 are separated by 254 nucleotides PfGW456L13_2856 - ChlI component of cobalt chelatase involved in B12 biosynthesis, at 3,177,626 to 3,178,633 _2856 PfGW456L13_2857 - ChlD component of cobalt chelatase involved in B12 biosynthesis, at 3,178,753 to 3,179,298 _2857 PfGW456L13_2858 - 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34), at 3,179,553 to 3,180,776 _2858 Position (kb) 3178 3179 3180Strain fitness (log2 ratio) -2 -1 0 1at 3177.903 kb on + strand, within PfGW456L13_2856at 3177.932 kb on + strand, within PfGW456L13_2856at 3177.932 kb on + strand, within PfGW456L13_2856at 3177.933 kb on - strand, within PfGW456L13_2856at 3177.933 kb on - strand, within PfGW456L13_2856at 3178.962 kb on + strand, within PfGW456L13_2857at 3178.963 kb on - strand, within PfGW456L13_2857at 3179.192 kb on + strand, within PfGW456L13_2857at 3179.303 kb on + strandat 3179.304 kb on - strandat 3179.554 kb on + strandat 3179.554 kb on + strandat 3179.599 kb on + strandat 3179.600 kb on - strandat 3179.600 kb on - strandat 3179.938 kb on + strand, within PfGW456L13_2858at 3179.938 kb on + strand, within PfGW456L13_2858

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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3,177,903 + PfGW456L13_2856 0.27 -1.1
3,177,932 + PfGW456L13_2856 0.30 +0.5
3,177,932 + PfGW456L13_2856 0.30 +0.1
3,177,933 - PfGW456L13_2856 0.30 -0.5
3,177,933 - PfGW456L13_2856 0.30 -0.8
3,178,962 + PfGW456L13_2857 0.38 -0.5
3,178,963 - PfGW456L13_2857 0.38 +0.3
3,179,192 + PfGW456L13_2857 0.80 -2.4
3,179,303 + +1.3
3,179,304 - +1.7
3,179,554 + +0.6
3,179,554 + -0.4
3,179,599 + +0.1
3,179,600 - -0.0
3,179,600 - +0.7
3,179,938 + PfGW456L13_2858 0.31 -0.1
3,179,938 + PfGW456L13_2858 0.31 -0.4

Or see this region's nucleotide sequence