Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_226

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_225 and PfGW456L13_226 are separated by 100 nucleotidesPfGW456L13_226 and PfGW456L13_227 overlap by 4 nucleotidesPfGW456L13_227 and PfGW456L13_228 are separated by 401 nucleotides PfGW456L13_225 - Methyl-accepting chemotaxis protein, at 266,635 to 268,572 _225 PfGW456L13_226 - FIG00959437: hypothetical protein, at 268,673 to 268,975 _226 PfGW456L13_227 - FIG00958420: hypothetical protein, at 268,972 to 269,202 _227 PfGW456L13_228 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 269,604 to 271,214 _228 Position (kb) 268 269Strain fitness (log2 ratio) -3 -2 -1 0 1at 267.725 kb on + strand, within PfGW456L13_225at 267.725 kb on + strand, within PfGW456L13_225at 267.953 kb on + strand, within PfGW456L13_225at 267.954 kb on - strand, within PfGW456L13_225at 267.954 kb on - strand, within PfGW456L13_225at 268.148 kb on + strand, within PfGW456L13_225at 268.148 kb on + strand, within PfGW456L13_225at 268.149 kb on - strand, within PfGW456L13_225at 268.149 kb on - strand, within PfGW456L13_225at 268.211 kb on + strand, within PfGW456L13_225at 268.211 kb on + strand, within PfGW456L13_225at 268.211 kb on + strand, within PfGW456L13_225at 268.211 kb on + strand, within PfGW456L13_225at 268.211 kb on + strand, within PfGW456L13_225at 268.212 kb on - strand, within PfGW456L13_225at 268.212 kb on - strand, within PfGW456L13_225at 268.212 kb on - strand, within PfGW456L13_225at 268.212 kb on - strand, within PfGW456L13_225at 268.212 kb on - strand, within PfGW456L13_225at 268.280 kb on + strand, within PfGW456L13_225at 268.372 kb on - strand, within PfGW456L13_225at 268.448 kb on + strandat 268.448 kb on + strandat 268.448 kb on + strandat 268.448 kb on + strandat 268.448 kb on + strandat 268.448 kb on + strandat 268.448 kb on + strandat 268.448 kb on + strandat 268.449 kb on - strandat 268.449 kb on - strandat 268.481 kb on + strandat 268.481 kb on + strandat 268.481 kb on + strandat 268.481 kb on + strandat 268.481 kb on + strandat 268.481 kb on + strandat 268.481 kb on + strandat 268.482 kb on - strandat 268.482 kb on - strandat 268.482 kb on - strandat 268.482 kb on - strandat 268.482 kb on - strandat 268.482 kb on - strandat 268.482 kb on - strandat 268.482 kb on - strandat 268.503 kb on + strandat 268.504 kb on - strandat 268.552 kb on - strandat 268.590 kb on + strandat 268.590 kb on + strandat 268.590 kb on + strandat 268.590 kb on + strandat 268.590 kb on + strandat 268.590 kb on + strandat 268.590 kb on + strandat 268.591 kb on - strandat 268.833 kb on + strand, within PfGW456L13_226at 268.834 kb on - strand, within PfGW456L13_226at 268.924 kb on - strand, within PfGW456L13_226at 268.968 kb on + strandat 268.968 kb on + strandat 268.969 kb on - strandat 269.235 kb on - strandat 269.268 kb on + strandat 269.269 kb on - strandat 269.270 kb on + strandat 269.321 kb on + strandat 269.321 kb on + strandat 269.321 kb on + strandat 269.321 kb on + strandat 269.321 kb on + strandat 269.321 kb on + strandat 269.322 kb on - strandat 269.322 kb on - strandat 269.322 kb on - strandat 269.322 kb on - strandat 269.333 kb on + strandat 269.368 kb on + strandat 269.369 kb on - strandat 269.369 kb on - strandat 269.369 kb on - strandat 269.369 kb on - strandat 269.369 kb on - strandat 269.369 kb on - strandat 269.372 kb on + strandat 269.372 kb on + strandat 269.372 kb on + strandat 269.372 kb on + strandat 269.372 kb on + strandat 269.372 kb on + strandat 269.373 kb on - strandat 269.373 kb on - strandat 269.373 kb on - strandat 269.373 kb on - strandat 269.373 kb on - strandat 269.373 kb on - strandat 269.466 kb on + strandat 269.466 kb on + strandat 269.466 kb on + strandat 269.467 kb on - strandat 269.467 kb on - strandat 269.467 kb on - strandat 269.467 kb on - strandat 269.467 kb on - strandat 269.473 kb on + strandat 269.474 kb on - strandat 269.491 kb on - strandat 269.542 kb on + strandat 269.542 kb on + strandat 269.542 kb on + strandat 269.542 kb on + strandat 269.542 kb on + strandat 269.543 kb on - strandat 269.543 kb on - strandat 269.543 kb on - strandat 269.543 kb on - strandat 269.543 kb on - strandat 269.543 kb on - strandat 269.543 kb on - strandat 269.543 kb on - strandat 269.543 kb on - strandat 269.543 kb on - strandat 269.543 kb on - strandat 269.543 kb on - strandat 269.600 kb on + strandat 269.600 kb on + strandat 269.600 kb on + strandat 269.600 kb on + strandat 269.601 kb on + strandat 269.601 kb on - strandat 269.601 kb on - strandat 269.603 kb on + strandat 269.604 kb on - strandat 269.892 kb on + strand, within PfGW456L13_228at 269.892 kb on + strand, within PfGW456L13_228at 269.892 kb on + strand, within PfGW456L13_228at 269.893 kb on - strand, within PfGW456L13_228at 269.931 kb on + strand, within PfGW456L13_228at 269.932 kb on - strand, within PfGW456L13_228at 269.932 kb on - strand, within PfGW456L13_228at 269.932 kb on - strand, within PfGW456L13_228at 269.932 kb on - strand, within PfGW456L13_228at 269.940 kb on + strand, within PfGW456L13_228at 269.940 kb on + strand, within PfGW456L13_228at 269.940 kb on + strand, within PfGW456L13_228at 269.940 kb on + strand, within PfGW456L13_228at 269.941 kb on - strand, within PfGW456L13_228at 269.941 kb on - strand, within PfGW456L13_228at 269.941 kb on - strand, within PfGW456L13_228at 269.941 kb on - strand, within PfGW456L13_228at 269.941 kb on - strand, within PfGW456L13_228at 269.941 kb on - strand, within PfGW456L13_228at 269.941 kb on - strand, within PfGW456L13_228at 269.941 kb on - strand, within PfGW456L13_228at 269.941 kb on - strand, within PfGW456L13_228at 269.941 kb on - strand, within PfGW456L13_228at 269.941 kb on - strand, within PfGW456L13_228at 269.944 kb on + strand, within PfGW456L13_228at 269.944 kb on + strand, within PfGW456L13_228at 269.944 kb on + strand, within PfGW456L13_228at 269.944 kb on + strand, within PfGW456L13_228at 269.945 kb on - strand, within PfGW456L13_228at 269.945 kb on - strand, within PfGW456L13_228at 269.945 kb on - strand, within PfGW456L13_228at 269.945 kb on - strand, within PfGW456L13_228

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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267,725 + PfGW456L13_225 0.56 -0.8
267,725 + PfGW456L13_225 0.56 -0.5
267,953 + PfGW456L13_225 0.68 +0.3
267,954 - PfGW456L13_225 0.68 +0.5
267,954 - PfGW456L13_225 0.68 +1.2
268,148 + PfGW456L13_225 0.78 -1.4
268,148 + PfGW456L13_225 0.78 +0.0
268,149 - PfGW456L13_225 0.78 -0.3
268,149 - PfGW456L13_225 0.78 +0.6
268,211 + PfGW456L13_225 0.81 +0.3
268,211 + PfGW456L13_225 0.81 +0.5
268,211 + PfGW456L13_225 0.81 -0.1
268,211 + PfGW456L13_225 0.81 -0.7
268,211 + PfGW456L13_225 0.81 +0.5
268,212 - PfGW456L13_225 0.81 -0.0
268,212 - PfGW456L13_225 0.81 -0.1
268,212 - PfGW456L13_225 0.81 -0.8
268,212 - PfGW456L13_225 0.81 +0.3
268,212 - PfGW456L13_225 0.81 -1.2
268,280 + PfGW456L13_225 0.85 -0.8
268,372 - PfGW456L13_225 0.90 -1.2
268,448 + -0.2
268,448 + -0.7
268,448 + -1.2
268,448 + +1.1
268,448 + -0.7
268,448 + -0.1
268,448 + -1.0
268,448 + -0.8
268,449 - +0.6
268,449 - +0.8
268,481 + +0.4
268,481 + -0.6
268,481 + -0.3
268,481 + -0.8
268,481 + +0.0
268,481 + -0.8
268,481 + -0.1
268,482 - -0.0
268,482 - +0.8
268,482 - +0.4
268,482 - -1.4
268,482 - +0.4
268,482 - +0.0
268,482 - +0.1
268,482 - +0.7
268,503 + -0.5
268,504 - +0.2
268,552 - -0.4
268,590 + -0.9
268,590 + +0.2
268,590 + -0.5
268,590 + -0.7
268,590 + -1.0
268,590 + -3.4
268,590 + -1.8
268,591 - -0.1
268,833 + PfGW456L13_226 0.53 -1.1
268,834 - PfGW456L13_226 0.53 -0.5
268,924 - PfGW456L13_226 0.83 -1.2
268,968 + -0.9
268,968 + -1.2
268,969 - -1.2
269,235 - -0.2
269,268 + -1.5
269,269 - -0.5
269,270 + -0.2
269,321 + -0.5
269,321 + -1.7
269,321 + -0.6
269,321 + +0.0
269,321 + -0.8
269,321 + -0.6
269,322 - +0.9
269,322 - +0.9
269,322 - +0.7
269,322 - -0.7
269,333 + -1.0
269,368 + +0.2
269,369 - +0.4
269,369 - +0.4
269,369 - +0.2
269,369 - +0.1
269,369 - +1.0
269,369 - +0.9
269,372 + +0.1
269,372 + -0.5
269,372 + -0.3
269,372 + -0.2
269,372 + -0.3
269,372 + -0.5
269,373 - +0.2
269,373 - +0.8
269,373 - +0.6
269,373 - -0.1
269,373 - +0.9
269,373 - +1.4
269,466 + -0.1
269,466 + +0.1
269,466 + +0.1
269,467 - +0.4
269,467 - +0.4
269,467 - +0.5
269,467 - +0.4
269,467 - +1.0
269,473 + -0.5
269,474 - +0.8
269,491 - -0.2
269,542 + -0.8
269,542 + +0.4
269,542 + -0.7
269,542 + +0.1
269,542 + -0.4
269,543 - +0.0
269,543 - +0.4
269,543 - +0.8
269,543 - +0.8
269,543 - -1.9
269,543 - -0.1
269,543 - -1.1
269,543 - -0.4
269,543 - +0.3
269,543 - +0.4
269,543 - +0.4
269,543 - +0.8
269,600 + +0.4
269,600 + +0.3
269,600 + -1.1
269,600 + -0.8
269,601 + -0.7
269,601 - -0.3
269,601 - +0.6
269,603 + +0.1
269,604 - -0.6
269,892 + PfGW456L13_228 0.18 +0.2
269,892 + PfGW456L13_228 0.18 +0.1
269,892 + PfGW456L13_228 0.18 +0.8
269,893 - PfGW456L13_228 0.18 +0.3
269,931 + PfGW456L13_228 0.20 -1.0
269,932 - PfGW456L13_228 0.20 +0.6
269,932 - PfGW456L13_228 0.20 -0.1
269,932 - PfGW456L13_228 0.20 +0.1
269,932 - PfGW456L13_228 0.20 -0.4
269,940 + PfGW456L13_228 0.21 -0.6
269,940 + PfGW456L13_228 0.21 -0.8
269,940 + PfGW456L13_228 0.21 -0.3
269,940 + PfGW456L13_228 0.21 +0.7
269,941 - PfGW456L13_228 0.21 -1.9
269,941 - PfGW456L13_228 0.21 -0.5
269,941 - PfGW456L13_228 0.21 +0.6
269,941 - PfGW456L13_228 0.21 +1.2
269,941 - PfGW456L13_228 0.21 -2.0
269,941 - PfGW456L13_228 0.21 +0.9
269,941 - PfGW456L13_228 0.21 +0.1
269,941 - PfGW456L13_228 0.21 -0.2
269,941 - PfGW456L13_228 0.21 +0.0
269,941 - PfGW456L13_228 0.21 +1.0
269,941 - PfGW456L13_228 0.21 -0.8
269,944 + PfGW456L13_228 0.21 -0.2
269,944 + PfGW456L13_228 0.21 -0.6
269,944 + PfGW456L13_228 0.21 -0.1
269,944 + PfGW456L13_228 0.21 +0.3
269,945 - PfGW456L13_228 0.21 +0.3
269,945 - PfGW456L13_228 0.21 +1.2
269,945 - PfGW456L13_228 0.21 +0.9
269,945 - PfGW456L13_228 0.21 +0.3

Or see this region's nucleotide sequence