Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2188 and PfGW456L13_2189 are separated by 8 nucleotides PfGW456L13_2189 and PfGW456L13_2190 are separated by 965 nucleotides
PfGW456L13_2188 - UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14), at 2,399,795 to 2,400,925
_2188
PfGW456L13_2189 - UDP-2,3-diacetamido-2,3-dideoxy-D-mannuronic acid transferase, at 2,400,934 to 2,402,193
_2189
PfGW456L13_2190 - Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-), at 2,403,159 to 2,404,190
_2190
Position (kb)
2400
2401
2402
2403 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2400.920 kb on + strand at 2400.956 kb on + strand at 2401.099 kb on + strand, within PfGW456L13_2189 at 2401.143 kb on + strand, within PfGW456L13_2189 at 2401.143 kb on + strand, within PfGW456L13_2189 at 2401.182 kb on + strand, within PfGW456L13_2189 at 2401.197 kb on - strand, within PfGW456L13_2189 at 2401.280 kb on - strand, within PfGW456L13_2189 at 2401.450 kb on + strand, within PfGW456L13_2189 at 2401.510 kb on + strand, within PfGW456L13_2189 at 2401.515 kb on + strand, within PfGW456L13_2189 at 2401.607 kb on + strand, within PfGW456L13_2189 at 2401.623 kb on + strand, within PfGW456L13_2189 at 2401.623 kb on + strand, within PfGW456L13_2189 at 2401.752 kb on + strand, within PfGW456L13_2189 at 2401.752 kb on + strand, within PfGW456L13_2189 at 2401.752 kb on + strand, within PfGW456L13_2189 at 2401.752 kb on + strand, within PfGW456L13_2189 at 2401.753 kb on - strand, within PfGW456L13_2189 at 2401.796 kb on + strand, within PfGW456L13_2189 at 2401.796 kb on + strand, within PfGW456L13_2189 at 2401.796 kb on + strand, within PfGW456L13_2189 at 2401.796 kb on + strand, within PfGW456L13_2189 at 2401.796 kb on + strand, within PfGW456L13_2189 at 2401.796 kb on + strand, within PfGW456L13_2189 at 2401.797 kb on - strand, within PfGW456L13_2189 at 2401.921 kb on + strand, within PfGW456L13_2189 at 2401.921 kb on + strand, within PfGW456L13_2189 at 2401.921 kb on + strand, within PfGW456L13_2189 at 2401.977 kb on + strand, within PfGW456L13_2189 at 2401.999 kb on + strand, within PfGW456L13_2189 at 2402.107 kb on + strand at 2402.130 kb on + strand at 2402.295 kb on - strand at 2402.299 kb on - strand at 2402.312 kb on + strand at 2402.312 kb on + strand at 2402.402 kb on + strand at 2402.403 kb on - strand at 2402.426 kb on + strand at 2402.427 kb on - strand at 2402.533 kb on - strand at 2402.539 kb on - strand at 2402.555 kb on + strand at 2402.587 kb on + strand at 2402.587 kb on + strand at 2402.587 kb on + strand at 2402.588 kb on - strand at 2402.588 kb on - strand at 2402.588 kb on - strand at 2402.588 kb on - strand at 2402.748 kb on + strand at 2402.748 kb on + strand at 2402.749 kb on - strand at 2402.749 kb on - strand at 2402.766 kb on + strand at 2402.767 kb on - strand at 2402.799 kb on + strand at 2402.799 kb on + strand at 2402.913 kb on + strand at 2402.914 kb on - strand at 2402.914 kb on - strand at 2402.966 kb on + strand at 2402.967 kb on - strand at 2402.969 kb on + strand at 2402.969 kb on + strand at 2402.969 kb on + strand at 2402.969 kb on + strand at 2402.969 kb on + strand at 2402.987 kb on + strand at 2402.990 kb on + strand at 2402.990 kb on + strand at 2402.990 kb on + strand at 2402.991 kb on - strand at 2403.066 kb on + strand at 2403.136 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 2,400,920 + -0.8 2,400,956 + -2.2 2,401,099 + PfGW456L13_2189 0.13 -2.8 2,401,143 + PfGW456L13_2189 0.17 -1.7 2,401,143 + PfGW456L13_2189 0.17 -0.2 2,401,182 + PfGW456L13_2189 0.20 -0.9 2,401,197 - PfGW456L13_2189 0.21 +0.2 2,401,280 - PfGW456L13_2189 0.27 +0.0 2,401,450 + PfGW456L13_2189 0.41 -2.1 2,401,510 + PfGW456L13_2189 0.46 -1.4 2,401,515 + PfGW456L13_2189 0.46 -1.1 2,401,607 + PfGW456L13_2189 0.53 -0.5 2,401,623 + PfGW456L13_2189 0.55 -1.2 2,401,623 + PfGW456L13_2189 0.55 -1.2 2,401,752 + PfGW456L13_2189 0.65 -0.3 2,401,752 + PfGW456L13_2189 0.65 -2.1 2,401,752 + PfGW456L13_2189 0.65 +0.7 2,401,752 + PfGW456L13_2189 0.65 -0.8 2,401,753 - PfGW456L13_2189 0.65 -1.1 2,401,796 + PfGW456L13_2189 0.68 +0.2 2,401,796 + PfGW456L13_2189 0.68 -1.7 2,401,796 + PfGW456L13_2189 0.68 -0.1 2,401,796 + PfGW456L13_2189 0.68 -2.1 2,401,796 + PfGW456L13_2189 0.68 -1.1 2,401,796 + PfGW456L13_2189 0.68 +1.2 2,401,797 - PfGW456L13_2189 0.68 -1.3 2,401,921 + PfGW456L13_2189 0.78 -0.5 2,401,921 + PfGW456L13_2189 0.78 -0.1 2,401,921 + PfGW456L13_2189 0.78 +0.5 2,401,977 + PfGW456L13_2189 0.83 +0.4 2,401,999 + PfGW456L13_2189 0.85 -0.4 2,402,107 + -0.8 2,402,130 + -1.3 2,402,295 - -1.9 2,402,299 - -2.1 2,402,312 + -1.1 2,402,312 + -1.1 2,402,402 + -1.5 2,402,403 - -0.9 2,402,426 + -1.7 2,402,427 - -0.7 2,402,533 - -1.7 2,402,539 - -0.7 2,402,555 + -1.8 2,402,587 + -0.4 2,402,587 + -0.6 2,402,587 + -1.1 2,402,588 - -0.6 2,402,588 - -1.4 2,402,588 - -1.4 2,402,588 - -0.8 2,402,748 + -2.9 2,402,748 + -1.4 2,402,749 - -0.7 2,402,749 - -1.0 2,402,766 + -2.2 2,402,767 - -1.0 2,402,799 + +1.2 2,402,799 + -1.5 2,402,913 + -0.7 2,402,914 - -1.0 2,402,914 - -1.1 2,402,966 + -1.3 2,402,967 - -1.1 2,402,969 + -1.1 2,402,969 + -2.8 2,402,969 + -0.7 2,402,969 + -0.4 2,402,969 + -1.2 2,402,987 + +0.3 2,402,990 + -2.0 2,402,990 + -1.1 2,402,990 + -0.0 2,402,991 - -2.3 2,403,066 + -0.8 2,403,136 + -2.8
Or see this region's nucleotide sequence