Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2189

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2188 and PfGW456L13_2189 are separated by 8 nucleotidesPfGW456L13_2189 and PfGW456L13_2190 are separated by 965 nucleotides PfGW456L13_2188 - UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14), at 2,399,795 to 2,400,925 _2188 PfGW456L13_2189 - UDP-2,3-diacetamido-2,3-dideoxy-D-mannuronic acid transferase, at 2,400,934 to 2,402,193 _2189 PfGW456L13_2190 - Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-), at 2,403,159 to 2,404,190 _2190 Position (kb) 2400 2401 2402 2403Strain fitness (log2 ratio) -3 -2 -1 0 1at 2400.920 kb on + strandat 2400.956 kb on + strandat 2401.099 kb on + strand, within PfGW456L13_2189at 2401.143 kb on + strand, within PfGW456L13_2189at 2401.143 kb on + strand, within PfGW456L13_2189at 2401.182 kb on + strand, within PfGW456L13_2189at 2401.197 kb on - strand, within PfGW456L13_2189at 2401.280 kb on - strand, within PfGW456L13_2189at 2401.450 kb on + strand, within PfGW456L13_2189at 2401.510 kb on + strand, within PfGW456L13_2189at 2401.515 kb on + strand, within PfGW456L13_2189at 2401.607 kb on + strand, within PfGW456L13_2189at 2401.623 kb on + strand, within PfGW456L13_2189at 2401.623 kb on + strand, within PfGW456L13_2189at 2401.752 kb on + strand, within PfGW456L13_2189at 2401.752 kb on + strand, within PfGW456L13_2189at 2401.752 kb on + strand, within PfGW456L13_2189at 2401.752 kb on + strand, within PfGW456L13_2189at 2401.753 kb on - strand, within PfGW456L13_2189at 2401.796 kb on + strand, within PfGW456L13_2189at 2401.796 kb on + strand, within PfGW456L13_2189at 2401.796 kb on + strand, within PfGW456L13_2189at 2401.796 kb on + strand, within PfGW456L13_2189at 2401.796 kb on + strand, within PfGW456L13_2189at 2401.796 kb on + strand, within PfGW456L13_2189at 2401.797 kb on - strand, within PfGW456L13_2189at 2401.921 kb on + strand, within PfGW456L13_2189at 2401.921 kb on + strand, within PfGW456L13_2189at 2401.921 kb on + strand, within PfGW456L13_2189at 2401.977 kb on + strand, within PfGW456L13_2189at 2401.999 kb on + strand, within PfGW456L13_2189at 2402.107 kb on + strandat 2402.130 kb on + strandat 2402.295 kb on - strandat 2402.299 kb on - strandat 2402.312 kb on + strandat 2402.312 kb on + strandat 2402.402 kb on + strandat 2402.403 kb on - strandat 2402.426 kb on + strandat 2402.427 kb on - strandat 2402.533 kb on - strandat 2402.539 kb on - strandat 2402.555 kb on + strandat 2402.587 kb on + strandat 2402.587 kb on + strandat 2402.587 kb on + strandat 2402.588 kb on - strandat 2402.588 kb on - strandat 2402.588 kb on - strandat 2402.588 kb on - strandat 2402.748 kb on + strandat 2402.748 kb on + strandat 2402.749 kb on - strandat 2402.749 kb on - strandat 2402.766 kb on + strandat 2402.767 kb on - strandat 2402.799 kb on + strandat 2402.799 kb on + strandat 2402.913 kb on + strandat 2402.914 kb on - strandat 2402.914 kb on - strandat 2402.966 kb on + strandat 2402.967 kb on - strandat 2402.969 kb on + strandat 2402.969 kb on + strandat 2402.969 kb on + strandat 2402.969 kb on + strandat 2402.969 kb on + strandat 2402.987 kb on + strandat 2402.990 kb on + strandat 2402.990 kb on + strandat 2402.990 kb on + strandat 2402.991 kb on - strandat 2403.066 kb on + strandat 2403.136 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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2,400,920 + -0.8
2,400,956 + -2.2
2,401,099 + PfGW456L13_2189 0.13 -2.8
2,401,143 + PfGW456L13_2189 0.17 -1.7
2,401,143 + PfGW456L13_2189 0.17 -0.2
2,401,182 + PfGW456L13_2189 0.20 -0.9
2,401,197 - PfGW456L13_2189 0.21 +0.2
2,401,280 - PfGW456L13_2189 0.27 +0.0
2,401,450 + PfGW456L13_2189 0.41 -2.1
2,401,510 + PfGW456L13_2189 0.46 -1.4
2,401,515 + PfGW456L13_2189 0.46 -1.1
2,401,607 + PfGW456L13_2189 0.53 -0.5
2,401,623 + PfGW456L13_2189 0.55 -1.2
2,401,623 + PfGW456L13_2189 0.55 -1.2
2,401,752 + PfGW456L13_2189 0.65 -0.3
2,401,752 + PfGW456L13_2189 0.65 -2.1
2,401,752 + PfGW456L13_2189 0.65 +0.7
2,401,752 + PfGW456L13_2189 0.65 -0.8
2,401,753 - PfGW456L13_2189 0.65 -1.1
2,401,796 + PfGW456L13_2189 0.68 +0.2
2,401,796 + PfGW456L13_2189 0.68 -1.7
2,401,796 + PfGW456L13_2189 0.68 -0.1
2,401,796 + PfGW456L13_2189 0.68 -2.1
2,401,796 + PfGW456L13_2189 0.68 -1.1
2,401,796 + PfGW456L13_2189 0.68 +1.2
2,401,797 - PfGW456L13_2189 0.68 -1.3
2,401,921 + PfGW456L13_2189 0.78 -0.5
2,401,921 + PfGW456L13_2189 0.78 -0.1
2,401,921 + PfGW456L13_2189 0.78 +0.5
2,401,977 + PfGW456L13_2189 0.83 +0.4
2,401,999 + PfGW456L13_2189 0.85 -0.4
2,402,107 + -0.8
2,402,130 + -1.3
2,402,295 - -1.9
2,402,299 - -2.1
2,402,312 + -1.1
2,402,312 + -1.1
2,402,402 + -1.5
2,402,403 - -0.9
2,402,426 + -1.7
2,402,427 - -0.7
2,402,533 - -1.7
2,402,539 - -0.7
2,402,555 + -1.8
2,402,587 + -0.4
2,402,587 + -0.6
2,402,587 + -1.1
2,402,588 - -0.6
2,402,588 - -1.4
2,402,588 - -1.4
2,402,588 - -0.8
2,402,748 + -2.9
2,402,748 + -1.4
2,402,749 - -0.7
2,402,749 - -1.0
2,402,766 + -2.2
2,402,767 - -1.0
2,402,799 + +1.2
2,402,799 + -1.5
2,402,913 + -0.7
2,402,914 - -1.0
2,402,914 - -1.1
2,402,966 + -1.3
2,402,967 - -1.1
2,402,969 + -1.1
2,402,969 + -2.8
2,402,969 + -0.7
2,402,969 + -0.4
2,402,969 + -1.2
2,402,987 + +0.3
2,402,990 + -2.0
2,402,990 + -1.1
2,402,990 + -0.0
2,402,991 - -2.3
2,403,066 + -0.8
2,403,136 + -2.8

Or see this region's nucleotide sequence