Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2012

Experiment: nitrate 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 200 mM
2,215,004	+		PfGW456L13_2010	0.80	+1.0
2,215,011	-		PfGW456L13_2010	0.81	+1.9
2,215,097	+				+1.7
2,215,097	+				+1.9
2,215,097	+				+1.6
2,215,097	+				+1.9
2,215,097	+				+1.0
2,215,097	+				+0.8
2,215,097	+				+1.8
2,215,097	+				+1.0
2,215,098	-				+0.8
2,215,098	-				-0.4
2,215,098	-				+1.8
2,215,112	+				+1.6
2,215,186	+				-3.4
2,215,186	+				-0.8
2,215,186	+				-1.0
2,215,187	-				+1.6
2,215,212	+				-3.2
2,215,213	-				+1.0
2,215,535	+		PfGW456L13_2011	0.43	+0.7
2,215,535	+		PfGW456L13_2011	0.43	+0.1
2,215,535	+		PfGW456L13_2011	0.43	+0.5
2,215,536	-		PfGW456L13_2011	0.43	+0.2
2,215,536	-		PfGW456L13_2011	0.43	+1.4
2,215,700	+		PfGW456L13_2011	0.67	+0.9
2,215,701	-		PfGW456L13_2011	0.67	+0.2
2,215,701	-		PfGW456L13_2011	0.67	+1.1
2,215,721	+		PfGW456L13_2011	0.70	+0.6
2,215,721	+		PfGW456L13_2011	0.70	+0.3
2,215,722	-		PfGW456L13_2011	0.71	+0.2
2,215,722	-		PfGW456L13_2011	0.71	+0.1
2,215,937	+				-1.0
2,215,937	+				-0.6
2,215,937	+				-0.2
2,216,164	+		PfGW456L13_2012	0.18	-1.2
2,216,165	-		PfGW456L13_2012	0.18	-0.7
2,216,166	+		PfGW456L13_2012	0.18	-2.0
2,216,166	+		PfGW456L13_2012	0.18	-2.6
2,216,166	+		PfGW456L13_2012	0.18	-1.9
2,216,166	+		PfGW456L13_2012	0.18	-1.2
2,216,167	-		PfGW456L13_2012	0.18	+0.9
2,216,167	-		PfGW456L13_2012	0.18	-2.3
2,216,167	-		PfGW456L13_2012	0.18	-0.7
2,216,170	+		PfGW456L13_2012	0.19	-1.2
2,216,170	+		PfGW456L13_2012	0.19	-3.3
2,216,170	+		PfGW456L13_2012	0.19	-2.1
2,216,170	+		PfGW456L13_2012	0.19	-1.9
2,216,170	+		PfGW456L13_2012	0.19	-2.3
2,216,170	+		PfGW456L13_2012	0.19	-1.3
2,216,170	+		PfGW456L13_2012	0.19	-1.5
2,216,170	+		PfGW456L13_2012	0.19	-0.8
2,216,170	+		PfGW456L13_2012	0.19	-2.3
2,216,170	+		PfGW456L13_2012	0.19	-2.6
2,216,171	-		PfGW456L13_2012	0.19	-0.5
2,216,171	-		PfGW456L13_2012	0.19	+0.9
2,216,171	-		PfGW456L13_2012	0.19	-0.7
2,216,171	-		PfGW456L13_2012	0.19	-1.7
2,216,171	-		PfGW456L13_2012	0.19	-0.2
2,216,230	+		PfGW456L13_2012	0.23	-0.8
2,216,230	+		PfGW456L13_2012	0.23	-0.9
2,216,231	-		PfGW456L13_2012	0.23	-0.8
2,216,231	-		PfGW456L13_2012	0.23	+0.8
2,216,416	+		PfGW456L13_2012	0.37	-3.7
2,216,417	-		PfGW456L13_2012	0.37	+0.2
2,216,417	-		PfGW456L13_2012	0.37	-1.4
2,216,607	+		PfGW456L13_2012	0.51	-0.7
2,216,607	+		PfGW456L13_2012	0.51	-1.7
2,216,608	-		PfGW456L13_2012	0.51	-0.3
2,216,608	-		PfGW456L13_2012	0.51	-1.9
2,216,661	+		PfGW456L13_2012	0.55	-1.7
2,216,826	-		PfGW456L13_2012	0.67	-1.1
2,216,935	+		PfGW456L13_2012	0.76	-2.0
2,216,935	+		PfGW456L13_2012	0.76	-1.8
2,216,935	+		PfGW456L13_2012	0.76	-2.8
2,216,935	+		PfGW456L13_2012	0.76	-2.4
2,216,935	+		PfGW456L13_2012	0.76	-2.1
2,216,935	+		PfGW456L13_2012	0.76	-4.0
2,216,935	+		PfGW456L13_2012	0.76	-0.4
2,216,935	+		PfGW456L13_2012	0.76	-2.6
2,216,936	-		PfGW456L13_2012	0.76	-1.4
2,216,936	-		PfGW456L13_2012	0.76	-2.6
2,216,936	-		PfGW456L13_2012	0.76	-1.3
2,216,936	-		PfGW456L13_2012	0.76	-2.2
2,216,939	+		PfGW456L13_2012	0.76	-3.4
2,217,017	+		PfGW456L13_2012	0.82	-2.6
2,217,017	+		PfGW456L13_2012	0.82	-2.0
2,217,017	+		PfGW456L13_2012	0.82	-0.2
2,217,083	+		PfGW456L13_2012	0.86	-3.0
2,217,190	+				-1.1
2,217,191	-				-2.3
2,217,191	-				-2.0
2,217,270	+				-1.6
2,217,277	+				-0.1
2,217,294	+				+0.2
2,217,295	-				-0.3
2,217,311	-				-0.8
2,217,360	+				-0.7
2,217,360	+				-0.5
2,217,360	+				+0.3
2,217,360	+				-0.8
2,217,360	+				+0.2
2,217,361	-				-0.3
2,217,361	-				-0.4
2,217,363	+				-0.8
2,217,364	-				-0.4
2,217,375	+				-0.3
2,217,375	+				-0.2
2,217,376	-				-0.3
2,217,438	-				+0.1
2,217,456	+				+0.1
2,217,456	+				+0.5
2,217,456	+				-1.0
2,217,456	+				-0.7
2,217,456	+				-0.5
2,217,456	+				-0.9
2,217,457	-				+0.3
2,217,550	+		PfGW456L13_2013	0.12	+0.8
2,217,568	+		PfGW456L13_2013	0.14	+0.2
2,217,604	+		PfGW456L13_2013	0.19	+1.0
2,217,650	+		PfGW456L13_2013	0.25	-0.7
2,217,650	+		PfGW456L13_2013	0.25	-0.4
2,217,650	+		PfGW456L13_2013	0.25	-0.3
2,217,650	+		PfGW456L13_2013	0.25	+0.7
2,217,650	+		PfGW456L13_2013	0.25	-0.1
2,217,650	+		PfGW456L13_2013	0.25	-1.0
2,217,650	+		PfGW456L13_2013	0.25	+0.2
2,217,651	-		PfGW456L13_2013	0.25	-0.9
2,217,651	-		PfGW456L13_2013	0.25	+0.8
2,217,651	-		PfGW456L13_2013	0.25	+0.4
2,217,651	-		PfGW456L13_2013	0.25	+1.3
2,217,651	-		PfGW456L13_2013	0.25	+0.5
2,217,660	+		PfGW456L13_2013	0.26	-0.8
2,217,660	+		PfGW456L13_2013	0.26	-1.0
2,217,661	-		PfGW456L13_2013	0.26	-1.7
2,217,661	-				+1.7
2,217,860	+		PfGW456L13_2013	0.53	-1.4
2,217,860	+		PfGW456L13_2013	0.53	+0.7
2,217,860	+		PfGW456L13_2013	0.53	+0.0
2,217,860	+		PfGW456L13_2013	0.53	-1.2
2,217,861	-		PfGW456L13_2013	0.53	-0.2
2,217,861	-		PfGW456L13_2013	0.53	-0.1
2,217,861	-		PfGW456L13_2013	0.53	-0.2
2,217,861	-		PfGW456L13_2013	0.53	+0.8
2,217,861	-		PfGW456L13_2013	0.53	-0.2
2,217,861	-		PfGW456L13_2013	0.53	-1.0
2,217,861	-		PfGW456L13_2013	0.53	+0.1
2,217,861	-		PfGW456L13_2013	0.53	-0.1
2,217,861	-		PfGW456L13_2013	0.53	+0.1
2,217,900	+		PfGW456L13_2013	0.58	-0.7
2,217,900	+		PfGW456L13_2013	0.58	-0.0
2,217,901	-		PfGW456L13_2013	0.58	+0.1
2,217,939	+		PfGW456L13_2013	0.63	+0.7
2,217,939	+		PfGW456L13_2013	0.63	+0.6
2,217,939	+		PfGW456L13_2013	0.63	-0.7
2,217,939	+		PfGW456L13_2013	0.63	-0.2
2,217,939	+		PfGW456L13_2013	0.63	-0.0
2,217,939	+		PfGW456L13_2013	0.63	+0.4
2,217,939	+		PfGW456L13_2013	0.63	+0.6
2,217,939	+		PfGW456L13_2013	0.63	-0.1
2,217,939	+		PfGW456L13_2013	0.63	+0.4
2,217,939	+		PfGW456L13_2013	0.63	+0.7
2,217,939	+		PfGW456L13_2013	0.63	+0.4
2,217,939	+		PfGW456L13_2013	0.63	+0.7
2,217,939	+		PfGW456L13_2013	0.63	-0.2
2,217,939	+		PfGW456L13_2013	0.63	-0.8
2,217,939	+		PfGW456L13_2013	0.63	-0.4
2,217,939	+		PfGW456L13_2013	0.63	+0.7
2,217,939	+		PfGW456L13_2013	0.63	+0.2
2,217,939	+		PfGW456L13_2013	0.63	+0.1
2,217,939	+		PfGW456L13_2013	0.63	+0.0
2,217,939	+		PfGW456L13_2013	0.63	-0.3
2,217,939	+		PfGW456L13_2013	0.63	-0.0
2,217,939	+		PfGW456L13_2013	0.63	-0.5
2,217,939	+		PfGW456L13_2013	0.63	-0.1
2,217,939	+		PfGW456L13_2013	0.63	+0.9
2,217,939	+		PfGW456L13_2013	0.63	+0.1
2,217,939	+		PfGW456L13_2013	0.63	+0.3
2,217,939	+		PfGW456L13_2013	0.63	-0.1
2,217,940	-		PfGW456L13_2013	0.63	-0.7
2,217,940	-		PfGW456L13_2013	0.63	+0.1
2,217,940	-		PfGW456L13_2013	0.63	+1.1
2,217,940	-		PfGW456L13_2013	0.63	-0.7
2,217,940	-		PfGW456L13_2013	0.63	-0.1
2,217,940	-		PfGW456L13_2013	0.63	+1.1
2,217,940	-		PfGW456L13_2013	0.63	+0.0
2,217,940	-		PfGW456L13_2013	0.63	+0.5
2,217,940	-		PfGW456L13_2013	0.63	-0.7
2,217,940	-		PfGW456L13_2013	0.63	-0.3
2,217,940	-		PfGW456L13_2013	0.63	+0.0
2,217,940	-		PfGW456L13_2013	0.63	+0.9
2,217,940	-		PfGW456L13_2013	0.63	-2.4
2,217,940	-		PfGW456L13_2013	0.63	+0.2
2,217,940	-		PfGW456L13_2013	0.63	+0.5
2,217,959	-		PfGW456L13_2013	0.66	+0.5
2,217,959	-		PfGW456L13_2013	0.66	-0.3
2,218,054	+		PfGW456L13_2013	0.78	-1.1
2,218,054	+		PfGW456L13_2013	0.78	-0.3
2,218,054	+		PfGW456L13_2013	0.78	+0.3
2,218,054	+		PfGW456L13_2013	0.78	-0.1
2,218,054	+		PfGW456L13_2013	0.78	-1.0
2,218,054	+		PfGW456L13_2013	0.78	+0.2
2,218,054	+		PfGW456L13_2013	0.78	-0.2
2,218,054	+		PfGW456L13_2013	0.78	-0.8
2,218,054	+		PfGW456L13_2013	0.78	-0.0
2,218,054	+		PfGW456L13_2013	0.78	+0.3
2,218,055	-		PfGW456L13_2013	0.79	-0.1
2,218,055	-		PfGW456L13_2013	0.79	-0.5
2,218,055	-		PfGW456L13_2013	0.79	+0.5
2,218,055	-		PfGW456L13_2013	0.79	+0.7
2,218,055	-		PfGW456L13_2013	0.79	-0.6
2,218,058	+		PfGW456L13_2013	0.79	+0.8
2,218,058	+		PfGW456L13_2013	0.79	-0.4
2,218,058	+		PfGW456L13_2013	0.79	-0.2
2,218,058	+		PfGW456L13_2013	0.79	+0.3
2,218,058	+		PfGW456L13_2013	0.79	+0.4
2,218,058	+		PfGW456L13_2013	0.79	+0.2
2,218,058	+		PfGW456L13_2013	0.79	-0.9
2,218,058	+		PfGW456L13_2013	0.79	-1.3
2,218,058	+		PfGW456L13_2013	0.79	+0.2
2,218,058	+		PfGW456L13_2013	0.79	-0.4
2,218,058	+		PfGW456L13_2013	0.79	+1.0
2,218,058	+		PfGW456L13_2013	0.79	+0.5
2,218,058	+		PfGW456L13_2013	0.79	-0.7
2,218,058	+		PfGW456L13_2013	0.79	-0.0
2,218,058	+		PfGW456L13_2013	0.79	-0.6
2,218,058	+		PfGW456L13_2013	0.79	-0.1
2,218,058	+		PfGW456L13_2013	0.79	+0.2
2,218,058	+		PfGW456L13_2013	0.79	+0.5
2,218,058	+		PfGW456L13_2013	0.79	+0.2
2,218,058	+		PfGW456L13_2013	0.79	+0.5
2,218,058	+		PfGW456L13_2013	0.79	+0.4
2,218,058	+		PfGW456L13_2013	0.79	+0.1
2,218,058	+		PfGW456L13_2013	0.79	-0.5
2,218,058	+		PfGW456L13_2013	0.79	+1.1
2,218,058	+		PfGW456L13_2013	0.79	+0.6
2,218,058	+		PfGW456L13_2013	0.79	+0.6
2,218,058	+		PfGW456L13_2013	0.79	+0.2
2,218,058	+		PfGW456L13_2013	0.79	-0.4
2,218,058	+		PfGW456L13_2013	0.79	-0.5
2,218,059	-		PfGW456L13_2013	0.79	-2.4
2,218,059	-				-0.1
2,218,059	-		PfGW456L13_2013	0.79	+0.9
2,218,059	-		PfGW456L13_2013	0.79	+0.5
2,218,059	-		PfGW456L13_2013	0.79	-0.3
2,218,059	-		PfGW456L13_2013	0.79	-0.2
2,218,059	-		PfGW456L13_2013	0.79	+1.1
2,218,059	-		PfGW456L13_2013	0.79	+0.8
2,218,059	-		PfGW456L13_2013	0.79	-1.1
2,218,059	-		PfGW456L13_2013	0.79	-2.6
2,218,059	-		PfGW456L13_2013	0.79	+1.9
2,218,059	-		PfGW456L13_2013	0.79	-0.1
2,218,059	-		PfGW456L13_2013	0.79	+1.9
2,218,059	-		PfGW456L13_2013	0.79	+0.9
2,218,059	-		PfGW456L13_2013	0.79	-0.3
2,218,059	-		PfGW456L13_2013	0.79	+0.0
2,218,059	-		PfGW456L13_2013	0.79	+1.4
2,218,059	-		PfGW456L13_2013	0.79	+0.2
2,218,078	+		PfGW456L13_2013	0.82	-1.7
2,218,078	+		PfGW456L13_2013	0.82	+0.0
2,218,078	+		PfGW456L13_2013	0.82	-0.2
2,218,078	+		PfGW456L13_2013	0.82	-1.5
2,218,079	-		PfGW456L13_2013	0.82	+0.3
2,218,124	+		PfGW456L13_2013	0.88	+2.2
2,218,124	+		PfGW456L13_2013	0.88	+0.4
2,218,125	-		PfGW456L13_2013	0.88	+0.9
2,218,128	+		PfGW456L13_2013	0.88	-0.7
2,218,128	+		PfGW456L13_2013	0.88	-0.8
2,218,128	+		PfGW456L13_2013	0.88	+0.3
2,218,138	+		PfGW456L13_2013	0.90	-1.5
2,218,178	+				-0.3
2,218,178	+				+0.0
2,218,214	+				+0.1