Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1753

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1751 and PfGW456L13_1752 are separated by 82 nucleotidesPfGW456L13_1752 and PfGW456L13_1753 are separated by 106 nucleotidesPfGW456L13_1753 and PfGW456L13_1754 are separated by 25 nucleotidesPfGW456L13_1754 and PfGW456L13_1755 overlap by 8 nucleotides PfGW456L13_1751 - DNA-binding response regulator, LuxR family, at 1,928,719 to 1,929,285 _1751 PfGW456L13_1752 - Leucyl-tRNA synthetase, at 1,929,368 to 1,929,547 _1752 PfGW456L13_1753 - Endonuclease III (EC 4.2.99.18), at 1,929,654 to 1,930,292 _1753 PfGW456L13_1754 - Electron transport complex protein RnfE, at 1,930,318 to 1,930,902 _1754 PfGW456L13_1755 - Electron transport complex protein RnfG, at 1,930,895 to 1,931,506 _1755 Position (kb) 1929 1930 1931Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1928.712 kb on + strandat 1928.712 kb on + strandat 1928.712 kb on + strandat 1928.712 kb on + strandat 1928.712 kb on + strandat 1928.713 kb on - strandat 1928.713 kb on - strandat 1928.713 kb on - strandat 1928.717 kb on + strandat 1928.999 kb on + strand, within PfGW456L13_1751at 1929.048 kb on + strand, within PfGW456L13_1751at 1929.186 kb on + strand, within PfGW456L13_1751at 1929.186 kb on + strand, within PfGW456L13_1751at 1929.198 kb on + strand, within PfGW456L13_1751at 1929.198 kb on + strand, within PfGW456L13_1751at 1929.198 kb on + strand, within PfGW456L13_1751at 1929.202 kb on + strand, within PfGW456L13_1751at 1929.203 kb on - strand, within PfGW456L13_1751at 1929.291 kb on + strandat 1929.291 kb on + strandat 1929.291 kb on + strandat 1929.291 kb on + strandat 1929.291 kb on + strandat 1929.291 kb on + strandat 1929.291 kb on + strandat 1929.292 kb on - strandat 1929.330 kb on + strandat 1929.330 kb on + strandat 1929.330 kb on + strandat 1929.331 kb on - strandat 1929.371 kb on + strandat 1929.371 kb on + strandat 1929.372 kb on - strandat 1929.454 kb on + strand, within PfGW456L13_1752at 1929.454 kb on + strand, within PfGW456L13_1752at 1929.455 kb on - strand, within PfGW456L13_1752at 1929.455 kb on - strand, within PfGW456L13_1752at 1929.518 kb on + strand, within PfGW456L13_1752at 1929.525 kb on - strand, within PfGW456L13_1752at 1929.525 kb on - strand, within PfGW456L13_1752at 1929.549 kb on + strandat 1929.550 kb on - strandat 1929.550 kb on - strandat 1929.550 kb on - strandat 1929.550 kb on - strandat 1929.563 kb on + strandat 1929.564 kb on - strandat 1929.585 kb on + strandat 1929.585 kb on + strandat 1929.585 kb on + strandat 1929.585 kb on + strandat 1929.585 kb on + strandat 1929.585 kb on + strandat 1929.585 kb on + strandat 1929.586 kb on - strandat 1929.586 kb on - strandat 1929.586 kb on - strandat 1929.587 kb on + strandat 1929.588 kb on - strandat 1929.588 kb on - strandat 1929.588 kb on - strandat 1929.588 kb on - strandat 1929.638 kb on + strandat 1929.648 kb on - strandat 1929.679 kb on + strandat 1929.679 kb on + strandat 1929.679 kb on + strandat 1929.679 kb on + strandat 1929.679 kb on + strandat 1929.679 kb on + strandat 1929.679 kb on + strandat 1929.680 kb on - strandat 1929.680 kb on - strandat 1929.680 kb on - strandat 1929.739 kb on + strand, within PfGW456L13_1753at 1929.739 kb on + strand, within PfGW456L13_1753at 1929.739 kb on + strand, within PfGW456L13_1753at 1929.740 kb on - strand, within PfGW456L13_1753at 1929.740 kb on - strand, within PfGW456L13_1753at 1929.781 kb on + strand, within PfGW456L13_1753at 1929.782 kb on - strand, within PfGW456L13_1753at 1929.873 kb on - strand, within PfGW456L13_1753at 1929.911 kb on + strand, within PfGW456L13_1753at 1929.912 kb on - strand, within PfGW456L13_1753at 1929.918 kb on + strand, within PfGW456L13_1753at 1930.048 kb on + strand, within PfGW456L13_1753at 1930.049 kb on - strand, within PfGW456L13_1753at 1930.049 kb on - strand, within PfGW456L13_1753at 1930.069 kb on + strand, within PfGW456L13_1753at 1930.069 kb on + strand, within PfGW456L13_1753at 1930.070 kb on - strand, within PfGW456L13_1753at 1930.070 kb on - strand, within PfGW456L13_1753at 1930.070 kb on - strand, within PfGW456L13_1753at 1930.198 kb on - strand, within PfGW456L13_1753at 1930.217 kb on - strand, within PfGW456L13_1753at 1930.217 kb on - strand, within PfGW456L13_1753at 1930.474 kb on + strand, within PfGW456L13_1754at 1930.474 kb on + strand, within PfGW456L13_1754at 1930.474 kb on + strand, within PfGW456L13_1754at 1930.474 kb on + strand, within PfGW456L13_1754at 1930.474 kb on + strand, within PfGW456L13_1754at 1930.474 kb on + strand, within PfGW456L13_1754at 1930.474 kb on + strand, within PfGW456L13_1754at 1930.475 kb on - strand, within PfGW456L13_1754at 1930.475 kb on - strand, within PfGW456L13_1754at 1930.475 kb on - strand, within PfGW456L13_1754at 1930.475 kb on - strand, within PfGW456L13_1754at 1930.551 kb on + strandat 1930.606 kb on + strand, within PfGW456L13_1754at 1930.606 kb on + strand, within PfGW456L13_1754at 1930.606 kb on + strand, within PfGW456L13_1754at 1930.607 kb on - strand, within PfGW456L13_1754at 1930.637 kb on + strand, within PfGW456L13_1754at 1930.637 kb on + strand, within PfGW456L13_1754at 1930.637 kb on + strand, within PfGW456L13_1754at 1930.638 kb on - strand, within PfGW456L13_1754at 1930.638 kb on - strand, within PfGW456L13_1754at 1930.638 kb on - strand, within PfGW456L13_1754at 1930.638 kb on - strand, within PfGW456L13_1754at 1930.638 kb on - strand, within PfGW456L13_1754at 1930.735 kb on - strand, within PfGW456L13_1754at 1930.735 kb on - strand, within PfGW456L13_1754at 1930.896 kb on + strandat 1930.897 kb on - strandat 1930.944 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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1,928,712 + +1.2
1,928,712 + -1.1
1,928,712 + +0.6
1,928,712 + +0.6
1,928,712 + -0.7
1,928,713 - -1.8
1,928,713 - -2.7
1,928,713 - -2.3
1,928,717 + -0.7
1,928,999 + PfGW456L13_1751 0.49 -0.4
1,929,048 + PfGW456L13_1751 0.58 -0.3
1,929,186 + PfGW456L13_1751 0.82 +0.2
1,929,186 + PfGW456L13_1751 0.82 +0.2
1,929,198 + PfGW456L13_1751 0.84 +0.1
1,929,198 + PfGW456L13_1751 0.84 -0.4
1,929,198 + PfGW456L13_1751 0.84 -0.1
1,929,202 + PfGW456L13_1751 0.85 +0.4
1,929,203 - PfGW456L13_1751 0.85 -1.2
1,929,291 + -0.4
1,929,291 + -0.3
1,929,291 + -1.0
1,929,291 + +0.7
1,929,291 + -0.6
1,929,291 + +0.7
1,929,291 + +0.3
1,929,292 - -0.3
1,929,330 + +1.4
1,929,330 + -0.3
1,929,330 + +1.5
1,929,331 - -2.3
1,929,371 + -0.0
1,929,371 + +1.5
1,929,372 - +2.0
1,929,454 + PfGW456L13_1752 0.48 +0.0
1,929,454 + PfGW456L13_1752 0.48 +0.6
1,929,455 - PfGW456L13_1752 0.48 +0.6
1,929,455 - PfGW456L13_1752 0.48 -0.2
1,929,518 + PfGW456L13_1752 0.83 +0.1
1,929,525 - PfGW456L13_1752 0.87 -0.2
1,929,525 - PfGW456L13_1752 0.87 -1.4
1,929,549 + -1.1
1,929,550 - -0.3
1,929,550 - -0.7
1,929,550 - -1.4
1,929,550 - -0.7
1,929,563 + -0.4
1,929,564 - -0.9
1,929,585 + +0.7
1,929,585 + +1.0
1,929,585 + -1.6
1,929,585 + +0.9
1,929,585 + +0.4
1,929,585 + -0.3
1,929,585 + +0.4
1,929,586 - +0.0
1,929,586 - +0.6
1,929,586 - +1.6
1,929,587 + +0.5
1,929,588 - +0.8
1,929,588 - +0.2
1,929,588 - -0.3
1,929,588 - +0.6
1,929,638 + +2.0
1,929,648 - +0.0
1,929,679 + +0.2
1,929,679 + -1.4
1,929,679 + -0.9
1,929,679 + +0.2
1,929,679 + -1.4
1,929,679 + -1.4
1,929,679 + -1.6
1,929,680 - -0.6
1,929,680 - +0.0
1,929,680 - +0.2
1,929,739 + PfGW456L13_1753 0.13 -1.1
1,929,739 + PfGW456L13_1753 0.13 -0.8
1,929,739 + PfGW456L13_1753 0.13 +0.1
1,929,740 - PfGW456L13_1753 0.13 -0.5
1,929,740 - PfGW456L13_1753 0.13 -0.0
1,929,781 + PfGW456L13_1753 0.20 -1.5
1,929,782 - PfGW456L13_1753 0.20 -0.4
1,929,873 - PfGW456L13_1753 0.34 -3.0
1,929,911 + PfGW456L13_1753 0.40 -1.2
1,929,912 - PfGW456L13_1753 0.40 -1.2
1,929,918 + PfGW456L13_1753 0.41 +0.3
1,930,048 + PfGW456L13_1753 0.62 -0.1
1,930,049 - PfGW456L13_1753 0.62 -1.3
1,930,049 - PfGW456L13_1753 0.62 -0.9
1,930,069 + PfGW456L13_1753 0.65 -0.6
1,930,069 + PfGW456L13_1753 0.65 -1.7
1,930,070 - PfGW456L13_1753 0.65 +0.3
1,930,070 - PfGW456L13_1753 0.65 -1.6
1,930,070 - PfGW456L13_1753 0.65 -1.1
1,930,198 - PfGW456L13_1753 0.85 -1.6
1,930,217 - PfGW456L13_1753 0.88 -0.3
1,930,217 - PfGW456L13_1753 0.88 -0.1
1,930,474 + PfGW456L13_1754 0.27 -0.2
1,930,474 + PfGW456L13_1754 0.27 -0.8
1,930,474 + PfGW456L13_1754 0.27 -0.9
1,930,474 + PfGW456L13_1754 0.27 +0.1
1,930,474 + PfGW456L13_1754 0.27 -0.3
1,930,474 + PfGW456L13_1754 0.27 +0.5
1,930,474 + PfGW456L13_1754 0.27 -1.0
1,930,475 - PfGW456L13_1754 0.27 +0.7
1,930,475 - PfGW456L13_1754 0.27 -0.4
1,930,475 - PfGW456L13_1754 0.27 -0.3
1,930,475 - PfGW456L13_1754 0.27 +0.2
1,930,551 + +1.8
1,930,606 + PfGW456L13_1754 0.49 +0.4
1,930,606 + PfGW456L13_1754 0.49 +0.4
1,930,606 + PfGW456L13_1754 0.49 +0.2
1,930,607 - PfGW456L13_1754 0.49 +1.0
1,930,637 + PfGW456L13_1754 0.55 +0.3
1,930,637 + PfGW456L13_1754 0.55 -0.3
1,930,637 + PfGW456L13_1754 0.55 +0.6
1,930,638 - PfGW456L13_1754 0.55 +0.8
1,930,638 - PfGW456L13_1754 0.55 -0.7
1,930,638 - PfGW456L13_1754 0.55 -1.4
1,930,638 - PfGW456L13_1754 0.55 +0.8
1,930,638 - PfGW456L13_1754 0.55 +0.9
1,930,735 - PfGW456L13_1754 0.71 -0.1
1,930,735 - PfGW456L13_1754 0.71 +0.2
1,930,896 + -0.4
1,930,897 - +0.1
1,930,944 + -0.4

Or see this region's nucleotide sequence