Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_173 and PfGW456L13_174 are separated by 252 nucleotides PfGW456L13_174 and PfGW456L13_175 are separated by 175 nucleotides
PfGW456L13_173 - HAMP domain protein, at 197,775 to 199,292
_173
PfGW456L13_174 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 199,545 to 200,258
_174
PfGW456L13_175 - Topoisomerase IV subunit A (EC 5.99.1.-), at 200,434 to 202,701
_175
Position (kb)
199
200
201 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 199.290 kb on + strand at 199.291 kb on - strand at 199.291 kb on - strand at 199.475 kb on + strand at 199.475 kb on + strand at 199.476 kb on - strand at 199.476 kb on - strand at 199.479 kb on + strand at 199.479 kb on + strand at 199.479 kb on + strand at 199.479 kb on + strand at 199.479 kb on + strand at 199.480 kb on - strand at 199.480 kb on - strand at 199.527 kb on + strand at 199.527 kb on + strand at 199.528 kb on - strand at 199.528 kb on - strand at 199.546 kb on + strand at 199.546 kb on + strand at 199.546 kb on + strand at 199.547 kb on - strand at 199.547 kb on - strand at 199.547 kb on - strand at 199.547 kb on - strand at 199.547 kb on - strand at 199.547 kb on - strand at 199.572 kb on - strand at 199.572 kb on - strand at 199.578 kb on - strand at 199.578 kb on - strand at 199.617 kb on + strand, within PfGW456L13_174 at 199.618 kb on - strand, within PfGW456L13_174 at 199.763 kb on + strand, within PfGW456L13_174 at 199.942 kb on - strand, within PfGW456L13_174 at 200.087 kb on - strand, within PfGW456L13_174 at 200.115 kb on + strand, within PfGW456L13_174 at 200.154 kb on - strand, within PfGW456L13_174 at 200.170 kb on + strand, within PfGW456L13_174 at 200.171 kb on - strand, within PfGW456L13_174 at 200.171 kb on - strand, within PfGW456L13_174 at 200.234 kb on + strand at 200.235 kb on - strand at 200.303 kb on - strand at 200.309 kb on + strand at 200.309 kb on + strand at 200.309 kb on + strand at 200.309 kb on + strand at 200.309 kb on + strand at 200.353 kb on - strand at 200.365 kb on + strand at 200.365 kb on + strand at 200.365 kb on + strand at 200.385 kb on + strand at 200.385 kb on + strand at 200.385 kb on + strand at 200.406 kb on - strand at 200.426 kb on + strand at 200.426 kb on + strand at 200.426 kb on + strand at 200.426 kb on + strand at 200.426 kb on + strand at 200.426 kb on + strand at 200.427 kb on - strand at 200.427 kb on - strand at 200.435 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 199,290 + +0.4 199,291 - -0.8 199,291 - +0.2 199,475 + -0.2 199,475 + -0.8 199,476 - -2.1 199,476 - -0.4 199,479 + +0.7 199,479 + -1.3 199,479 + -0.7 199,479 + -0.3 199,479 + +0.0 199,480 - -0.5 199,480 - -0.4 199,527 + -0.8 199,527 + +0.1 199,528 - -1.2 199,528 - -0.2 199,546 + -0.6 199,546 + +0.3 199,546 + -1.7 199,547 - -1.0 199,547 - -1.3 199,547 - -0.3 199,547 - +0.1 199,547 - +0.2 199,547 - -0.7 199,572 - -1.1 199,572 - -0.5 199,578 - -0.5 199,578 - -0.1 199,617 + PfGW456L13_174 0.10 -1.6 199,618 - PfGW456L13_174 0.10 -0.4 199,763 + PfGW456L13_174 0.31 -0.8 199,942 - PfGW456L13_174 0.56 -0.2 200,087 - PfGW456L13_174 0.76 -0.4 200,115 + PfGW456L13_174 0.80 -1.0 200,154 - PfGW456L13_174 0.85 -1.0 200,170 + PfGW456L13_174 0.88 -0.8 200,171 - PfGW456L13_174 0.88 -0.4 200,171 - PfGW456L13_174 0.88 -0.4 200,234 + -1.1 200,235 - -1.1 200,303 - +1.0 200,309 + -0.8 200,309 + +0.8 200,309 + -1.5 200,309 + -2.4 200,309 + +0.3 200,353 - +1.7 200,365 + +0.1 200,365 + -1.3 200,365 + -1.5 200,385 + -1.1 200,385 + -0.7 200,385 + -0.9 200,406 - +0.9 200,426 + -1.0 200,426 + -1.8 200,426 + -1.1 200,426 + -0.4 200,426 + -0.7 200,426 + -1.1 200,427 - +2.3 200,427 - +1.6 200,435 + +0.1
Or see this region's nucleotide sequence