Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1723

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1722 and PfGW456L13_1723 are separated by 133 nucleotidesPfGW456L13_1723 and PfGW456L13_1724 are separated by 66 nucleotides PfGW456L13_1722 - Thiol:disulfide interchange protein DsbC, at 1,897,044 to 1,897,775 _1722 PfGW456L13_1723 - Homoserine dehydrogenase (EC 1.1.1.3), at 1,897,909 to 1,899,213 _1723 PfGW456L13_1724 - Threonine synthase (EC 4.2.3.1), at 1,899,280 to 1,900,689 _1724 Position (kb) 1897 1898 1899 1900Strain fitness (log2 ratio) -2 -1 0 1at 1896.944 kb on + strandat 1896.944 kb on + strandat 1896.944 kb on + strandat 1896.944 kb on + strandat 1896.944 kb on + strandat 1896.944 kb on + strandat 1896.945 kb on - strandat 1896.945 kb on - strandat 1896.945 kb on - strandat 1896.945 kb on - strandat 1896.952 kb on - strandat 1896.981 kb on + strandat 1896.981 kb on + strandat 1897.133 kb on + strand, within PfGW456L13_1722at 1897.133 kb on + strand, within PfGW456L13_1722at 1897.133 kb on + strand, within PfGW456L13_1722at 1897.203 kb on + strand, within PfGW456L13_1722at 1897.257 kb on + strand, within PfGW456L13_1722at 1897.257 kb on + strand, within PfGW456L13_1722at 1897.257 kb on + strand, within PfGW456L13_1722at 1897.272 kb on + strand, within PfGW456L13_1722at 1897.272 kb on + strand, within PfGW456L13_1722at 1897.417 kb on + strand, within PfGW456L13_1722at 1897.417 kb on + strand, within PfGW456L13_1722at 1897.417 kb on + strand, within PfGW456L13_1722at 1897.417 kb on + strand, within PfGW456L13_1722at 1897.418 kb on - strand, within PfGW456L13_1722at 1897.418 kb on - strand, within PfGW456L13_1722at 1897.418 kb on - strand, within PfGW456L13_1722at 1897.500 kb on + strand, within PfGW456L13_1722at 1897.500 kb on + strand, within PfGW456L13_1722at 1897.500 kb on + strand, within PfGW456L13_1722at 1897.501 kb on - strand, within PfGW456L13_1722at 1897.501 kb on - strand, within PfGW456L13_1722at 1897.773 kb on + strandat 1897.840 kb on + strandat 1899.211 kb on + strandat 1899.211 kb on + strandat 1899.211 kb on + strandat 1899.211 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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1,896,944 + +0.8
1,896,944 + +0.4
1,896,944 + -0.6
1,896,944 + +0.7
1,896,944 + +1.0
1,896,944 + +0.2
1,896,945 - +0.0
1,896,945 - -0.3
1,896,945 - +0.4
1,896,945 - +0.9
1,896,952 - -1.3
1,896,981 + -0.2
1,896,981 + -2.1
1,897,133 + PfGW456L13_1722 0.12 +0.1
1,897,133 + PfGW456L13_1722 0.12 -1.6
1,897,133 + PfGW456L13_1722 0.12 -1.8
1,897,203 + PfGW456L13_1722 0.22 -0.5
1,897,257 + PfGW456L13_1722 0.29 -0.5
1,897,257 + PfGW456L13_1722 0.29 -0.7
1,897,257 + PfGW456L13_1722 0.29 -0.9
1,897,272 + PfGW456L13_1722 0.31 -0.7
1,897,272 + PfGW456L13_1722 0.31 -0.4
1,897,417 + PfGW456L13_1722 0.51 -1.3
1,897,417 + PfGW456L13_1722 0.51 +0.6
1,897,417 + PfGW456L13_1722 0.51 -0.9
1,897,417 + PfGW456L13_1722 0.51 -0.6
1,897,418 - PfGW456L13_1722 0.51 -1.8
1,897,418 - PfGW456L13_1722 0.51 -0.2
1,897,418 - PfGW456L13_1722 0.51 -0.3
1,897,500 + PfGW456L13_1722 0.62 +0.5
1,897,500 + PfGW456L13_1722 0.62 +0.0
1,897,500 + PfGW456L13_1722 0.62 -0.5
1,897,501 - PfGW456L13_1722 0.62 +0.7
1,897,501 - PfGW456L13_1722 0.62 +0.0
1,897,773 + -1.2
1,897,840 + +1.3
1,899,211 + +0.8
1,899,211 + -0.3
1,899,211 + +0.2
1,899,211 + +0.3

Or see this region's nucleotide sequence