Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1620

Experiment: nitrate 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 200 mM
1,778,658	+		PfGW456L13_1619	0.64	+0.1
1,778,659	-		PfGW456L13_1619	0.64	+2.2
1,778,765	-		PfGW456L13_1619	0.71	+0.8
1,778,791	-		PfGW456L13_1619	0.72	-0.9
1,778,791	-		PfGW456L13_1619	0.72	-0.2
1,778,791	-		PfGW456L13_1619	0.72	-0.9
1,778,977	+		PfGW456L13_1619	0.83	-0.1
1,778,977	+		PfGW456L13_1619	0.83	-1.4
1,778,986	+		PfGW456L13_1619	0.84	-1.2
1,778,986	+		PfGW456L13_1619	0.84	-1.1
1,778,986	+		PfGW456L13_1619	0.84	-0.0
1,778,987	-		PfGW456L13_1619	0.84	+0.7
1,779,155	+				+1.4
1,779,259	-				+1.5
1,779,259	-				+0.3
1,779,415	+				+0.2
1,779,415	+				+1.9
1,779,431	+				+0.8
1,779,432	-				-1.7
1,779,432	-				+2.1
1,779,434	+				+0.6
1,779,434	+				+0.9
1,779,435	-				-2.7
1,779,435	-				-0.9
1,779,435	-				-0.5
1,779,435	-				-0.8
1,779,435	-				+0.5
1,779,435	-				-2.0
1,779,447	+				-0.8
1,779,448	-				+0.1
1,779,448	-				+0.7
1,779,448	-				-1.6
1,779,448	-				-0.6
1,779,467	-				-0.2
1,779,553	+				+0.9
1,779,592	+				-0.4
1,779,593	-				-0.1
1,779,662	+				-1.0
1,779,663	-				-0.3
1,779,663	-				-0.1
1,779,933	+		PfGW456L13_1620	0.17	-1.2
1,779,933	+		PfGW456L13_1620	0.17	-0.6
1,779,934	-		PfGW456L13_1620	0.18	-0.7
1,779,934	-		PfGW456L13_1620	0.18	-0.3
1,779,934	-		PfGW456L13_1620	0.18	-1.6
1,780,048	-		PfGW456L13_1620	0.24	-0.8
1,780,056	+		PfGW456L13_1620	0.24	-0.0
1,780,056	+		PfGW456L13_1620	0.24	-1.1
1,780,056	+		PfGW456L13_1620	0.24	+0.7
1,780,056	+		PfGW456L13_1620	0.24	+0.5
1,780,056	+		PfGW456L13_1620	0.24	-1.9
1,780,057	-		PfGW456L13_1620	0.24	-1.0
1,780,057	-		PfGW456L13_1620	0.24	-0.8
1,780,057	-		PfGW456L13_1620	0.24	+0.5
1,780,057	-		PfGW456L13_1620	0.24	+0.7
1,780,057	-		PfGW456L13_1620	0.24	-0.3
1,780,121	+		PfGW456L13_1620	0.27	-0.8
1,780,121	+		PfGW456L13_1620	0.27	+0.3
1,780,121	+		PfGW456L13_1620	0.27	+0.1
1,780,121	+		PfGW456L13_1620	0.27	-0.5
1,780,122	-		PfGW456L13_1620	0.27	-0.6
1,780,122	-		PfGW456L13_1620	0.27	-0.4
1,780,122	-		PfGW456L13_1620	0.27	-1.0
1,780,122	-		PfGW456L13_1620	0.27	-0.6
1,780,122	-		PfGW456L13_1620	0.27	-0.5
1,780,122	-		PfGW456L13_1620	0.27	-0.6
1,780,122	-		PfGW456L13_1620	0.27	-0.3
1,780,227	+		PfGW456L13_1620	0.33	-1.5
1,780,227	+		PfGW456L13_1620	0.33	+0.6
1,780,227	+		PfGW456L13_1620	0.33	-1.0
1,780,227	+		PfGW456L13_1620	0.33	-0.5
1,780,227	+		PfGW456L13_1620	0.33	-0.2
1,780,227	+		PfGW456L13_1620	0.33	-1.3
1,780,227	+		PfGW456L13_1620	0.33	-0.8
1,780,227	+		PfGW456L13_1620	0.33	+1.4
1,780,227	+		PfGW456L13_1620	0.33	-1.1
1,780,227	+		PfGW456L13_1620	0.33	-1.4
1,780,227	+		PfGW456L13_1620	0.33	-2.5
1,780,227	+		PfGW456L13_1620	0.33	-1.7
1,780,227	+		PfGW456L13_1620	0.33	-1.5
1,780,227	+		PfGW456L13_1620	0.33	-0.1
1,780,227	+		PfGW456L13_1620	0.33	-0.0
1,780,228	-		PfGW456L13_1620	0.33	-2.5
1,780,228	-		PfGW456L13_1620	0.33	-1.5
1,780,228	-		PfGW456L13_1620	0.33	-0.1
1,780,228	-		PfGW456L13_1620	0.33	-1.0
1,780,228	-		PfGW456L13_1620	0.33	-0.7
1,780,228	-		PfGW456L13_1620	0.33	-0.3
1,780,228	-		PfGW456L13_1620	0.33	-0.3
1,780,228	-		PfGW456L13_1620	0.33	-1.2
1,780,228	-		PfGW456L13_1620	0.33	-1.3
1,780,228	-		PfGW456L13_1620	0.33	+0.2
1,780,228	-		PfGW456L13_1620	0.33	-0.3
1,780,228	-		PfGW456L13_1620	0.33	-0.9
1,780,228	-		PfGW456L13_1620	0.33	-0.7
1,780,228	-		PfGW456L13_1620	0.33	-0.5
1,780,272	+		PfGW456L13_1620	0.35	-0.3
1,780,515	+		PfGW456L13_1620	0.48	+0.5
1,780,515	+		PfGW456L13_1620	0.48	-0.4
1,780,515	+		PfGW456L13_1620	0.48	-0.7
1,780,515	+		PfGW456L13_1620	0.48	-0.2
1,780,515	+		PfGW456L13_1620	0.48	-1.3
1,780,515	+		PfGW456L13_1620	0.48	-0.4
1,780,515	+		PfGW456L13_1620	0.48	-0.1
1,780,515	+		PfGW456L13_1620	0.48	-2.1
1,780,515	+		PfGW456L13_1620	0.48	-0.7
1,780,515	+		PfGW456L13_1620	0.48	-0.4
1,780,515	+		PfGW456L13_1620	0.48	-2.9
1,780,516	-		PfGW456L13_1620	0.48	-0.9
1,780,516	-		PfGW456L13_1620	0.48	-0.7
1,780,516	-		PfGW456L13_1620	0.48	-0.4
1,780,516	-		PfGW456L13_1620	0.48	-0.9
1,780,516	-		PfGW456L13_1620	0.48	-1.0
1,780,516	-		PfGW456L13_1620	0.48	-0.5
1,780,516	-		PfGW456L13_1620	0.48	-0.1
1,780,516	-		PfGW456L13_1620	0.48	-1.3
1,780,516	-		PfGW456L13_1620	0.48	-0.5
1,780,516	-		PfGW456L13_1620	0.48	-0.3
1,780,516	-		PfGW456L13_1620	0.48	-0.7
1,780,551	+		PfGW456L13_1620	0.50	-0.3
1,780,551	+		PfGW456L13_1620	0.50	-0.6
1,780,551	+		PfGW456L13_1620	0.50	+0.3
1,780,552	-		PfGW456L13_1620	0.50	-0.9
1,780,552	-		PfGW456L13_1620	0.50	+0.1
1,780,563	+				+0.1
1,780,563	+		PfGW456L13_1620	0.51	-0.6
1,780,564	-		PfGW456L13_1620	0.51	-1.2
1,780,564	-		PfGW456L13_1620	0.51	-1.9
1,780,564	-		PfGW456L13_1620	0.51	-0.7
1,780,564	-		PfGW456L13_1620	0.51	-1.3
1,780,614	+		PfGW456L13_1620	0.53	-0.7
1,780,689	+		PfGW456L13_1620	0.57	-0.5
1,780,690	-		PfGW456L13_1620	0.57	-0.8
1,780,690	-		PfGW456L13_1620	0.57	-0.9
1,780,783	-		PfGW456L13_1620	0.62	+1.1
1,780,844	+		PfGW456L13_1620	0.65	-0.7
1,780,844	+		PfGW456L13_1620	0.65	-1.5
1,780,844	+		PfGW456L13_1620	0.65	-1.2
1,780,845	-		PfGW456L13_1620	0.65	-0.9
1,780,845	-		PfGW456L13_1620	0.65	-0.1
1,780,845	-		PfGW456L13_1620	0.65	-0.8
1,780,845	-		PfGW456L13_1620	0.65	-1.3
1,780,845	-		PfGW456L13_1620	0.65	-1.4
1,780,846	+		PfGW456L13_1620	0.65	-0.8
1,780,847	-		PfGW456L13_1620	0.65	-3.3
1,780,847	-		PfGW456L13_1620	0.65	-0.1
1,780,853	+		PfGW456L13_1620	0.66	-1.7
1,780,853	+		PfGW456L13_1620	0.66	-1.0
1,780,854	-		PfGW456L13_1620	0.66	+0.0
1,780,854	-		PfGW456L13_1620	0.66	-1.2
1,780,854	-		PfGW456L13_1620	0.66	-1.2
1,780,854	-		PfGW456L13_1620	0.66	-1.0
1,781,082	+		PfGW456L13_1620	0.78	-0.2
1,781,083	-		PfGW456L13_1620	0.78	-0.3
1,781,120	+		PfGW456L13_1620	0.80	-2.6
1,781,259	+		PfGW456L13_1620	0.87	-0.7
1,781,259	+		PfGW456L13_1620	0.87	-2.5
1,781,259	+		PfGW456L13_1620	0.87	-1.0
1,781,260	-		PfGW456L13_1620	0.87	-0.3
1,781,260	-		PfGW456L13_1620	0.87	+0.3
1,781,299	+		PfGW456L13_1620	0.89	-0.1
1,781,299	+		PfGW456L13_1620	0.89	+1.1
1,781,300	-		PfGW456L13_1620	0.89	+0.5
1,781,300	-		PfGW456L13_1620	0.89	-1.3
1,781,300	-		PfGW456L13_1620	0.89	-0.7
1,781,326	-				-1.0
1,781,394	+				-0.6
1,781,395	-				-0.9
1,781,406	+				-0.7
1,781,406	+				-0.4
1,781,406	+				-0.5
1,781,406	+				+0.2
1,781,406	+				-1.7
1,781,406	+				-0.5
1,781,406	+				-2.9
1,781,406	+				-1.5
1,781,407	-				-0.9
1,781,424	+				-0.1
1,781,448	+				-1.2
1,781,448	+				-0.7
1,781,448	+				-1.6
1,781,448	+				-1.9
1,781,448	+				-0.4
1,781,448	+				-0.9
1,781,448	+				-1.5
1,781,448	+				+0.5
1,781,449	-				-0.2
1,781,449	-				-1.4
1,781,502	+				-0.7
1,781,502	+				-1.1
1,781,502	+				+0.9
1,781,502	+				-0.3
1,781,503	-				-0.9
1,781,532	+				+0.7
1,781,532	+				-0.9
1,781,532	+				-3.4
1,781,532	+				+0.0
1,781,533	-				-0.9
1,781,533	-				-0.6
1,781,533	-				-0.4
1,781,533	-				-1.2
1,781,533	-				-0.6
1,781,809	+		PfGW456L13_1621	0.20	+0.0
1,781,809	+		PfGW456L13_1621	0.20	+0.1
1,781,809	+		PfGW456L13_1621	0.20	+0.7
1,781,810	-		PfGW456L13_1621	0.20	-0.3
1,781,810	-		PfGW456L13_1621	0.20	-0.5
1,781,837	-		PfGW456L13_1621	0.22	-0.6
1,782,127	+		PfGW456L13_1621	0.44	-1.3
1,782,127	+		PfGW456L13_1621	0.44	-0.0
1,782,128	-		PfGW456L13_1621	0.44	+1.7
1,782,128	-		PfGW456L13_1621	0.44	-0.5
1,782,128	-		PfGW456L13_1621	0.44	-0.3
1,782,128	-		PfGW456L13_1621	0.44	-0.5
1,782,169	+		PfGW456L13_1621	0.47	-0.2
1,782,170	-		PfGW456L13_1621	0.47	+0.3
1,782,170	-		PfGW456L13_1621	0.47	+0.2
1,782,170	-		PfGW456L13_1621	0.47	-0.8
1,782,170	-		PfGW456L13_1621	0.47	-0.3
1,782,202	+		PfGW456L13_1621	0.49	+0.9
1,782,203	-		PfGW456L13_1621	0.49	+0.9
1,782,203	-		PfGW456L13_1621	0.49	-1.6
1,782,203	-		PfGW456L13_1621	0.49	-0.3
1,782,203	-		PfGW456L13_1621	0.49	-0.8
1,782,203	-		PfGW456L13_1621	0.49	-1.3
1,782,203	-		PfGW456L13_1621	0.49	-1.5
1,782,248	+		PfGW456L13_1621	0.52	+0.7
1,782,248	+		PfGW456L13_1621	0.52	+0.2
1,782,249	-		PfGW456L13_1621	0.52	-0.4
1,782,249	-		PfGW456L13_1621	0.52	+0.3
1,782,304	+		PfGW456L13_1621	0.56	+0.1
1,782,305	-		PfGW456L13_1621	0.57	-0.6
1,782,305	-		PfGW456L13_1621	0.57	+0.7
1,782,305	-		PfGW456L13_1621	0.57	+0.7
1,782,349	+		PfGW456L13_1621	0.60	-0.2
1,782,349	+		PfGW456L13_1621	0.60	+0.4
1,782,350	-		PfGW456L13_1621	0.60	-0.9
1,782,350	-		PfGW456L13_1621	0.60	-0.8
1,782,384	+		PfGW456L13_1621	0.62	+0.8
1,782,385	-		PfGW456L13_1621	0.62	-0.2
1,782,385	-		PfGW456L13_1621	0.62	-0.0
1,782,385	-		PfGW456L13_1621	0.62	-0.9
1,782,406	+		PfGW456L13_1621	0.64	+0.3
1,782,406	+		PfGW456L13_1621	0.64	-1.4
1,782,406	+		PfGW456L13_1621	0.64	+0.6
1,782,406	+		PfGW456L13_1621	0.64	+1.0
1,782,406	+		PfGW456L13_1621	0.64	+0.2
1,782,406	+		PfGW456L13_1621	0.64	-0.3
1,782,406	+		PfGW456L13_1621	0.64	-0.5
1,782,406	+		PfGW456L13_1621	0.64	+0.1
1,782,406	+		PfGW456L13_1621	0.64	+0.3
1,782,406	+		PfGW456L13_1621	0.64	+0.7
1,782,406	+		PfGW456L13_1621	0.64	+0.4
1,782,406	+		PfGW456L13_1621	0.64	+0.1
1,782,407	-		PfGW456L13_1621	0.64	-0.8
1,782,407	-		PfGW456L13_1621	0.64	-1.1
1,782,407	-		PfGW456L13_1621	0.64	+1.7
1,782,407	-		PfGW456L13_1621	0.64	-0.5
1,782,407	-		PfGW456L13_1621	0.64	-2.7
1,782,407	-		PfGW456L13_1621	0.64	+0.1
1,782,407	-		PfGW456L13_1621	0.64	-0.4
1,782,407	-		PfGW456L13_1621	0.64	+0.3
1,782,407	-		PfGW456L13_1621	0.64	+2.1
1,782,407	-		PfGW456L13_1621	0.64	-0.1
1,782,407	-		PfGW456L13_1621	0.64	+0.6
1,782,407	-		PfGW456L13_1621	0.64	+0.1
1,782,407	-		PfGW456L13_1621	0.64	-1.3
1,782,460	+		PfGW456L13_1621	0.68	+0.2
1,782,460	+		PfGW456L13_1621	0.68	+0.1
1,782,460	+		PfGW456L13_1621	0.68	+0.2
1,782,460	+		PfGW456L13_1621	0.68	-0.1
1,782,460	+		PfGW456L13_1621	0.68	+0.9
1,782,460	+		PfGW456L13_1621	0.68	-0.3
1,782,460	+		PfGW456L13_1621	0.68	+0.8
1,782,460	+		PfGW456L13_1621	0.68	-0.2
1,782,460	+		PfGW456L13_1621	0.68	+0.6
1,782,460	+		PfGW456L13_1621	0.68	-0.3
1,782,460	+		PfGW456L13_1621	0.68	-1.0
1,782,461	-		PfGW456L13_1621	0.68	+0.2
1,782,461	-		PfGW456L13_1621	0.68	+1.3
1,782,461	-		PfGW456L13_1621	0.68	-0.2
1,782,461	-		PfGW456L13_1621	0.68	+0.6
1,782,461	-		PfGW456L13_1621	0.68	+0.1
1,782,461	-		PfGW456L13_1621	0.68	-0.1
1,782,461	-		PfGW456L13_1621	0.68	-0.3
1,782,461	-		PfGW456L13_1621	0.68	-0.4
1,782,461	-		PfGW456L13_1621	0.68	-0.4
1,782,461	-		PfGW456L13_1621	0.68	-0.0
1,782,461	-		PfGW456L13_1621	0.68	-0.7
1,782,461	-		PfGW456L13_1621	0.68	+0.6
1,782,461	-		PfGW456L13_1621	0.68	-0.4
1,782,461	-		PfGW456L13_1621	0.68	+0.5
1,782,461	-		PfGW456L13_1621	0.68	-1.0
1,782,461	-		PfGW456L13_1621	0.68	+0.1
1,782,461	-		PfGW456L13_1621	0.68	-0.3
1,782,461	-		PfGW456L13_1621	0.68	-0.4
1,782,478	+		PfGW456L13_1621	0.69	+0.7
1,782,478	+		PfGW456L13_1621	0.69	-0.3
1,782,479	-		PfGW456L13_1621	0.69	+1.0
1,782,479	-		PfGW456L13_1621	0.69	+2.1
1,782,479	-		PfGW456L13_1621	0.69	-0.0