Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1602

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1600 and PfGW456L13_1601 are separated by 170 nucleotidesPfGW456L13_1601 and PfGW456L13_1602 are separated by 63 nucleotidesPfGW456L13_1602 and PfGW456L13_1603 are separated by 67 nucleotides PfGW456L13_1600 - Tryptophan synthase beta chain like (EC 4.2.1.20), at 1,762,014 to 1,762,487 _1600 PfGW456L13_1601 - FIG00953775: hypothetical protein, at 1,762,658 to 1,763,143 _1601 PfGW456L13_1602 - Aminopeptidase N, at 1,763,207 to 1,763,494 _1602 PfGW456L13_1603 - Malate:quinone oxidoreductase (EC 1.1.5.4), at 1,763,562 to 1,765,070 _1603 Position (kb) 1763 1764Strain fitness (log2 ratio) -2 -1 0 1at 1762.455 kb on + strandat 1762.626 kb on + strandat 1762.626 kb on + strandat 1762.626 kb on + strandat 1762.626 kb on + strandat 1762.626 kb on + strandat 1762.626 kb on + strandat 1762.626 kb on + strandat 1762.626 kb on + strandat 1762.626 kb on + strandat 1762.627 kb on - strandat 1762.627 kb on - strandat 1762.627 kb on - strandat 1762.627 kb on - strandat 1762.627 kb on - strandat 1762.627 kb on - strandat 1762.627 kb on - strandat 1762.627 kb on - strandat 1762.627 kb on - strandat 1762.627 kb on - strandat 1762.627 kb on - strandat 1762.817 kb on + strand, within PfGW456L13_1601at 1762.983 kb on - strand, within PfGW456L13_1601at 1762.990 kb on + strand, within PfGW456L13_1601at 1762.990 kb on + strand, within PfGW456L13_1601at 1762.991 kb on - strand, within PfGW456L13_1601at 1763.015 kb on + strand, within PfGW456L13_1601at 1763.016 kb on - strand, within PfGW456L13_1601at 1763.016 kb on - strand, within PfGW456L13_1601at 1763.069 kb on + strand, within PfGW456L13_1601at 1763.069 kb on + strand, within PfGW456L13_1601at 1763.069 kb on + strand, within PfGW456L13_1601at 1763.069 kb on + strand, within PfGW456L13_1601at 1763.069 kb on + strand, within PfGW456L13_1601at 1763.069 kb on + strand, within PfGW456L13_1601at 1763.069 kb on + strand, within PfGW456L13_1601at 1763.070 kb on - strand, within PfGW456L13_1601at 1763.070 kb on - strand, within PfGW456L13_1601at 1763.070 kb on - strand, within PfGW456L13_1601at 1763.070 kb on - strand, within PfGW456L13_1601at 1763.070 kb on - strand, within PfGW456L13_1601at 1763.087 kb on + strand, within PfGW456L13_1601at 1763.088 kb on - strand, within PfGW456L13_1601at 1763.212 kb on + strandat 1763.212 kb on + strandat 1763.212 kb on + strandat 1763.213 kb on - strandat 1763.218 kb on + strandat 1763.219 kb on - strandat 1763.219 kb on - strandat 1763.327 kb on + strand, within PfGW456L13_1602at 1763.327 kb on + strand, within PfGW456L13_1602at 1763.462 kb on + strand, within PfGW456L13_1602at 1763.462 kb on + strand, within PfGW456L13_1602at 1763.462 kb on + strand, within PfGW456L13_1602at 1763.462 kb on + strand, within PfGW456L13_1602at 1763.463 kb on - strand, within PfGW456L13_1602at 1763.463 kb on - strand, within PfGW456L13_1602at 1763.463 kb on - strand, within PfGW456L13_1602at 1763.569 kb on + strandat 1763.570 kb on - strandat 1763.570 kb on - strandat 1763.570 kb on - strandat 1763.570 kb on - strandat 1763.570 kb on - strandat 1763.936 kb on - strand, within PfGW456L13_1603at 1763.995 kb on + strand, within PfGW456L13_1603at 1763.996 kb on - strand, within PfGW456L13_1603at 1764.461 kb on - strand, within PfGW456L13_1603

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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1,762,455 + -1.1
1,762,626 + +0.2
1,762,626 + +0.2
1,762,626 + +0.7
1,762,626 + -0.4
1,762,626 + -0.7
1,762,626 + -0.1
1,762,626 + +0.5
1,762,626 + +0.3
1,762,626 + +0.1
1,762,627 - -0.6
1,762,627 - +0.6
1,762,627 - +0.3
1,762,627 - +0.7
1,762,627 - +1.4
1,762,627 - +0.1
1,762,627 - -0.1
1,762,627 - +1.1
1,762,627 - -1.5
1,762,627 - +0.1
1,762,627 - -0.8
1,762,817 + PfGW456L13_1601 0.33 -0.5
1,762,983 - PfGW456L13_1601 0.67 +0.6
1,762,990 + PfGW456L13_1601 0.68 -2.6
1,762,990 + PfGW456L13_1601 0.68 -0.7
1,762,991 - PfGW456L13_1601 0.69 +0.4
1,763,015 + PfGW456L13_1601 0.73 +0.2
1,763,016 - PfGW456L13_1601 0.74 +0.2
1,763,016 - PfGW456L13_1601 0.74 +0.9
1,763,069 + PfGW456L13_1601 0.85 -0.6
1,763,069 + PfGW456L13_1601 0.85 -0.2
1,763,069 + PfGW456L13_1601 0.85 -1.4
1,763,069 + PfGW456L13_1601 0.85 +1.2
1,763,069 + PfGW456L13_1601 0.85 -0.2
1,763,069 + PfGW456L13_1601 0.85 +0.2
1,763,069 + PfGW456L13_1601 0.85 +0.5
1,763,070 - PfGW456L13_1601 0.85 +0.4
1,763,070 - PfGW456L13_1601 0.85 +0.7
1,763,070 - PfGW456L13_1601 0.85 -0.4
1,763,070 - PfGW456L13_1601 0.85 -2.6
1,763,070 - PfGW456L13_1601 0.85 +1.3
1,763,087 + PfGW456L13_1601 0.88 -1.1
1,763,088 - PfGW456L13_1601 0.88 -1.6
1,763,212 + -0.2
1,763,212 + +0.2
1,763,212 + +0.1
1,763,213 - +0.3
1,763,218 + -0.3
1,763,219 - +1.5
1,763,219 - -1.7
1,763,327 + PfGW456L13_1602 0.42 -1.0
1,763,327 + PfGW456L13_1602 0.42 -0.4
1,763,462 + PfGW456L13_1602 0.89 -0.3
1,763,462 + PfGW456L13_1602 0.89 -1.8
1,763,462 + PfGW456L13_1602 0.89 -0.9
1,763,462 + PfGW456L13_1602 0.89 -2.0
1,763,463 - PfGW456L13_1602 0.89 +0.2
1,763,463 - PfGW456L13_1602 0.89 -1.8
1,763,463 - PfGW456L13_1602 0.89 -0.1
1,763,569 + -0.1
1,763,570 - +0.5
1,763,570 - +0.9
1,763,570 - -0.3
1,763,570 - +1.5
1,763,570 - +0.2
1,763,936 - PfGW456L13_1603 0.25 -1.4
1,763,995 + PfGW456L13_1603 0.29 +1.1
1,763,996 - PfGW456L13_1603 0.29 -0.2
1,764,461 - PfGW456L13_1603 0.60 -1.7

Or see this region's nucleotide sequence