Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1600 and PfGW456L13_1601 are separated by 170 nucleotides PfGW456L13_1601 and PfGW456L13_1602 are separated by 63 nucleotides PfGW456L13_1602 and PfGW456L13_1603 are separated by 67 nucleotides
PfGW456L13_1600 - Tryptophan synthase beta chain like (EC 4.2.1.20), at 1,762,014 to 1,762,487
_1600
PfGW456L13_1601 - FIG00953775: hypothetical protein, at 1,762,658 to 1,763,143
_1601
PfGW456L13_1602 - Aminopeptidase N, at 1,763,207 to 1,763,494
_1602
PfGW456L13_1603 - Malate:quinone oxidoreductase (EC 1.1.5.4), at 1,763,562 to 1,765,070
_1603
Position (kb)
1763
1764 Strain fitness (log2 ratio)
-2
-1
0
1 at 1762.455 kb on + strand at 1762.626 kb on + strand at 1762.626 kb on + strand at 1762.626 kb on + strand at 1762.626 kb on + strand at 1762.626 kb on + strand at 1762.626 kb on + strand at 1762.626 kb on + strand at 1762.626 kb on + strand at 1762.626 kb on + strand at 1762.627 kb on - strand at 1762.627 kb on - strand at 1762.627 kb on - strand at 1762.627 kb on - strand at 1762.627 kb on - strand at 1762.627 kb on - strand at 1762.627 kb on - strand at 1762.627 kb on - strand at 1762.627 kb on - strand at 1762.627 kb on - strand at 1762.627 kb on - strand at 1762.817 kb on + strand, within PfGW456L13_1601 at 1762.983 kb on - strand, within PfGW456L13_1601 at 1762.990 kb on + strand, within PfGW456L13_1601 at 1762.990 kb on + strand, within PfGW456L13_1601 at 1762.991 kb on - strand, within PfGW456L13_1601 at 1763.015 kb on + strand, within PfGW456L13_1601 at 1763.016 kb on - strand, within PfGW456L13_1601 at 1763.016 kb on - strand, within PfGW456L13_1601 at 1763.069 kb on + strand, within PfGW456L13_1601 at 1763.069 kb on + strand, within PfGW456L13_1601 at 1763.069 kb on + strand, within PfGW456L13_1601 at 1763.069 kb on + strand, within PfGW456L13_1601 at 1763.069 kb on + strand, within PfGW456L13_1601 at 1763.069 kb on + strand, within PfGW456L13_1601 at 1763.069 kb on + strand, within PfGW456L13_1601 at 1763.070 kb on - strand, within PfGW456L13_1601 at 1763.070 kb on - strand, within PfGW456L13_1601 at 1763.070 kb on - strand, within PfGW456L13_1601 at 1763.070 kb on - strand, within PfGW456L13_1601 at 1763.070 kb on - strand, within PfGW456L13_1601 at 1763.087 kb on + strand, within PfGW456L13_1601 at 1763.088 kb on - strand, within PfGW456L13_1601 at 1763.212 kb on + strand at 1763.212 kb on + strand at 1763.212 kb on + strand at 1763.213 kb on - strand at 1763.218 kb on + strand at 1763.219 kb on - strand at 1763.219 kb on - strand at 1763.327 kb on + strand, within PfGW456L13_1602 at 1763.327 kb on + strand, within PfGW456L13_1602 at 1763.462 kb on + strand, within PfGW456L13_1602 at 1763.462 kb on + strand, within PfGW456L13_1602 at 1763.462 kb on + strand, within PfGW456L13_1602 at 1763.462 kb on + strand, within PfGW456L13_1602 at 1763.463 kb on - strand, within PfGW456L13_1602 at 1763.463 kb on - strand, within PfGW456L13_1602 at 1763.463 kb on - strand, within PfGW456L13_1602 at 1763.569 kb on + strand at 1763.570 kb on - strand at 1763.570 kb on - strand at 1763.570 kb on - strand at 1763.570 kb on - strand at 1763.570 kb on - strand at 1763.936 kb on - strand, within PfGW456L13_1603 at 1763.995 kb on + strand, within PfGW456L13_1603 at 1763.996 kb on - strand, within PfGW456L13_1603 at 1764.461 kb on - strand, within PfGW456L13_1603
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 1,762,455 + -1.1 1,762,626 + +0.2 1,762,626 + +0.2 1,762,626 + +0.7 1,762,626 + -0.4 1,762,626 + -0.7 1,762,626 + -0.1 1,762,626 + +0.5 1,762,626 + +0.3 1,762,626 + +0.1 1,762,627 - -0.6 1,762,627 - +0.6 1,762,627 - +0.3 1,762,627 - +0.7 1,762,627 - +1.4 1,762,627 - +0.1 1,762,627 - -0.1 1,762,627 - +1.1 1,762,627 - -1.5 1,762,627 - +0.1 1,762,627 - -0.8 1,762,817 + PfGW456L13_1601 0.33 -0.5 1,762,983 - PfGW456L13_1601 0.67 +0.6 1,762,990 + PfGW456L13_1601 0.68 -2.6 1,762,990 + PfGW456L13_1601 0.68 -0.7 1,762,991 - PfGW456L13_1601 0.69 +0.4 1,763,015 + PfGW456L13_1601 0.73 +0.2 1,763,016 - PfGW456L13_1601 0.74 +0.2 1,763,016 - PfGW456L13_1601 0.74 +0.9 1,763,069 + PfGW456L13_1601 0.85 -0.6 1,763,069 + PfGW456L13_1601 0.85 -0.2 1,763,069 + PfGW456L13_1601 0.85 -1.4 1,763,069 + PfGW456L13_1601 0.85 +1.2 1,763,069 + PfGW456L13_1601 0.85 -0.2 1,763,069 + PfGW456L13_1601 0.85 +0.2 1,763,069 + PfGW456L13_1601 0.85 +0.5 1,763,070 - PfGW456L13_1601 0.85 +0.4 1,763,070 - PfGW456L13_1601 0.85 +0.7 1,763,070 - PfGW456L13_1601 0.85 -0.4 1,763,070 - PfGW456L13_1601 0.85 -2.6 1,763,070 - PfGW456L13_1601 0.85 +1.3 1,763,087 + PfGW456L13_1601 0.88 -1.1 1,763,088 - PfGW456L13_1601 0.88 -1.6 1,763,212 + -0.2 1,763,212 + +0.2 1,763,212 + +0.1 1,763,213 - +0.3 1,763,218 + -0.3 1,763,219 - +1.5 1,763,219 - -1.7 1,763,327 + PfGW456L13_1602 0.42 -1.0 1,763,327 + PfGW456L13_1602 0.42 -0.4 1,763,462 + PfGW456L13_1602 0.89 -0.3 1,763,462 + PfGW456L13_1602 0.89 -1.8 1,763,462 + PfGW456L13_1602 0.89 -0.9 1,763,462 + PfGW456L13_1602 0.89 -2.0 1,763,463 - PfGW456L13_1602 0.89 +0.2 1,763,463 - PfGW456L13_1602 0.89 -1.8 1,763,463 - PfGW456L13_1602 0.89 -0.1 1,763,569 + -0.1 1,763,570 - +0.5 1,763,570 - +0.9 1,763,570 - -0.3 1,763,570 - +1.5 1,763,570 - +0.2 1,763,936 - PfGW456L13_1603 0.25 -1.4 1,763,995 + PfGW456L13_1603 0.29 +1.1 1,763,996 - PfGW456L13_1603 0.29 -0.2 1,764,461 - PfGW456L13_1603 0.60 -1.7
Or see this region's nucleotide sequence