Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_159 and PfGW456L13_160 are separated by 63 nucleotides PfGW456L13_160 and PfGW456L13_161 overlap by 19 nucleotides PfGW456L13_161 and PfGW456L13_162 are separated by 194 nucleotides
PfGW456L13_159 - NAD(P)HX epimerase / NAD(P)HX dehydratase, at 183,730 to 185,229
_159
PfGW456L13_160 - Epoxyqueuosine (oQ) reductase QueG, at 185,293 to 186,372
_160
PfGW456L13_161 - putative transporter, required for glycine utilization <small>(from data)</small>, at 186,354 to 186,965
_161
PfGW456L13_162 - 3'-to-5' oligoribonuclease (orn), at 187,160 to 187,702
_162
Position (kb) 185
186
187 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 184.545 kb on + strand, within PfGW456L13_159 at 184.546 kb on - strand, within PfGW456L13_159 at 184.573 kb on - strand, within PfGW456L13_159 at 184.802 kb on + strand, within PfGW456L13_159 at 184.802 kb on + strand, within PfGW456L13_159 at 184.802 kb on + strand, within PfGW456L13_159 at 184.802 kb on + strand, within PfGW456L13_159 at 184.802 kb on + strand, within PfGW456L13_159 at 184.803 kb on - strand, within PfGW456L13_159 at 184.803 kb on - strand, within PfGW456L13_159 at 184.803 kb on - strand, within PfGW456L13_159 at 184.803 kb on - strand, within PfGW456L13_159 at 184.803 kb on - strand, within PfGW456L13_159 at 184.852 kb on + strand, within PfGW456L13_159 at 184.852 kb on + strand, within PfGW456L13_159 at 184.852 kb on + strand, within PfGW456L13_159 at 184.852 kb on + strand, within PfGW456L13_159 at 184.852 kb on + strand, within PfGW456L13_159 at 184.853 kb on - strand, within PfGW456L13_159 at 184.853 kb on - strand, within PfGW456L13_159 at 184.853 kb on - strand, within PfGW456L13_159 at 184.853 kb on - strand, within PfGW456L13_159 at 184.853 kb on - strand, within PfGW456L13_159 at 184.853 kb on - strand, within PfGW456L13_159 at 184.853 kb on - strand, within PfGW456L13_159 at 184.853 kb on - strand, within PfGW456L13_159 at 184.946 kb on - strand, within PfGW456L13_159 at 185.190 kb on + strand at 185.190 kb on + strand at 185.190 kb on + strand at 185.190 kb on + strand at 185.190 kb on + strand at 185.191 kb on - strand at 185.191 kb on - strand at 185.191 kb on - strand at 185.192 kb on + strand at 185.192 kb on + strand at 185.192 kb on + strand at 185.192 kb on + strand at 185.192 kb on + strand at 185.192 kb on + strand at 185.192 kb on + strand at 185.192 kb on + strand at 185.193 kb on - strand at 185.193 kb on - strand at 185.193 kb on - strand at 185.193 kb on - strand at 185.193 kb on - strand at 185.193 kb on - strand at 185.193 kb on - strand at 185.193 kb on - strand at 185.193 kb on - strand at 185.193 kb on - strand at 185.193 kb on - strand at 185.207 kb on - strand at 185.207 kb on - strand at 185.218 kb on - strand at 185.218 kb on - strand at 185.218 kb on - strand at 185.218 kb on - strand at 185.218 kb on - strand at 185.260 kb on + strand at 185.260 kb on + strand at 185.260 kb on + strand at 185.260 kb on + strand at 185.260 kb on + strand at 185.260 kb on + strand at 185.261 kb on - strand at 185.261 kb on - strand at 185.261 kb on - strand at 185.261 kb on - strand at 185.261 kb on - strand at 185.261 kb on - strand at 185.262 kb on + strand at 185.262 kb on + strand at 185.262 kb on + strand at 185.262 kb on + strand at 185.263 kb on - strand at 185.263 kb on - strand at 185.263 kb on - strand at 185.263 kb on - strand at 185.302 kb on - strand at 185.304 kb on + strand at 185.304 kb on + strand at 185.305 kb on - strand at 185.455 kb on + strand, within PfGW456L13_160 at 185.455 kb on + strand, within PfGW456L13_160 at 185.455 kb on + strand, within PfGW456L13_160 at 185.455 kb on + strand, within PfGW456L13_160 at 185.455 kb on + strand, within PfGW456L13_160 at 185.455 kb on + strand, within PfGW456L13_160 at 185.455 kb on + strand, within PfGW456L13_160 at 185.456 kb on - strand, within PfGW456L13_160 at 185.456 kb on - strand, within PfGW456L13_160 at 185.456 kb on - strand, within PfGW456L13_160 at 185.456 kb on - strand, within PfGW456L13_160 at 185.456 kb on - strand, within PfGW456L13_160 at 185.456 kb on - strand, within PfGW456L13_160 at 185.456 kb on - strand, within PfGW456L13_160 at 185.456 kb on - strand, within PfGW456L13_160 at 185.539 kb on + strand, within PfGW456L13_160 at 185.539 kb on + strand, within PfGW456L13_160 at 185.539 kb on + strand, within PfGW456L13_160 at 185.539 kb on + strand, within PfGW456L13_160 at 185.539 kb on + strand, within PfGW456L13_160 at 185.540 kb on - strand, within PfGW456L13_160 at 185.540 kb on - strand, within PfGW456L13_160 at 185.593 kb on + strand, within PfGW456L13_160 at 185.594 kb on - strand, within PfGW456L13_160 at 185.623 kb on + strand, within PfGW456L13_160 at 185.624 kb on - strand, within PfGW456L13_160 at 185.775 kb on + strand, within PfGW456L13_160 at 185.775 kb on + strand, within PfGW456L13_160 at 185.776 kb on - strand, within PfGW456L13_160 at 185.933 kb on - strand, within PfGW456L13_160 at 185.933 kb on - strand, within PfGW456L13_160 at 185.963 kb on - strand, within PfGW456L13_160 at 186.311 kb on + strand at 186.311 kb on + strand at 186.311 kb on + strand at 186.312 kb on - strand at 186.370 kb on + strand at 186.370 kb on + strand at 186.370 kb on + strand at 186.371 kb on - strand at 186.371 kb on - strand at 186.465 kb on + strand, within PfGW456L13_161 at 186.475 kb on + strand, within PfGW456L13_161 at 186.475 kb on + strand, within PfGW456L13_161 at 186.476 kb on - strand, within PfGW456L13_161 at 186.476 kb on - strand, within PfGW456L13_161 at 186.476 kb on - strand, within PfGW456L13_161 at 186.476 kb on - strand, within PfGW456L13_161 at 186.476 kb on - strand, within PfGW456L13_161 at 186.490 kb on + strand, within PfGW456L13_161 at 186.490 kb on + strand, within PfGW456L13_161 at 186.490 kb on + strand, within PfGW456L13_161 at 186.490 kb on + strand, within PfGW456L13_161 at 186.490 kb on + strand, within PfGW456L13_161 at 186.490 kb on + strand, within PfGW456L13_161 at 186.490 kb on + strand, within PfGW456L13_161 at 186.490 kb on + strand, within PfGW456L13_161 at 186.490 kb on + strand, within PfGW456L13_161 at 186.490 kb on + strand, within PfGW456L13_161 at 186.490 kb on + strand, within PfGW456L13_161 at 186.490 kb on + strand, within PfGW456L13_161 at 186.490 kb on + strand, within PfGW456L13_161 at 186.491 kb on - strand, within PfGW456L13_161 at 186.491 kb on - strand, within PfGW456L13_161 at 186.491 kb on - strand, within PfGW456L13_161 at 186.491 kb on - strand, within PfGW456L13_161 at 186.491 kb on - strand, within PfGW456L13_161 at 186.491 kb on - strand, within PfGW456L13_161 at 186.491 kb on - strand, within PfGW456L13_161 at 186.491 kb on - strand, within PfGW456L13_161 at 186.491 kb on - strand, within PfGW456L13_161 at 186.524 kb on - strand, within PfGW456L13_161 at 186.524 kb on - strand, within PfGW456L13_161 at 186.552 kb on - strand, within PfGW456L13_161 at 186.737 kb on + strand, within PfGW456L13_161 at 186.738 kb on - strand, within PfGW456L13_161 at 186.779 kb on - strand, within PfGW456L13_161 at 186.949 kb on + strand at 186.966 kb on - strand at 186.997 kb on + strand at 186.998 kb on - strand at 186.998 kb on - strand at 187.051 kb on + strand at 187.051 kb on + strand at 187.051 kb on + strand at 187.051 kb on + strand at 187.051 kb on + strand at 187.051 kb on + strand at 187.051 kb on + strand at 187.051 kb on + strand at 187.051 kb on + strand at 187.051 kb on + strand at 187.051 kb on + strand at 187.051 kb on + strand at 187.052 kb on - strand at 187.052 kb on - strand at 187.052 kb on - strand at 187.052 kb on - strand at 187.052 kb on - strand at 187.052 kb on - strand at 187.052 kb on - strand at 187.052 kb on - strand at 187.052 kb on - strand at 187.052 kb on - strand at 187.052 kb on - strand at 187.052 kb on - strand at 187.052 kb on - strand at 187.052 kb on - strand at 187.052 kb on - strand at 187.052 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 184,545 + PfGW456L13_159 0.54 -0.3 184,546 - PfGW456L13_159 0.54 +2.7 184,573 - PfGW456L13_159 0.56 +2.6 184,802 + PfGW456L13_159 0.71 -1.0 184,802 + PfGW456L13_159 0.71 -2.3 184,802 + PfGW456L13_159 0.71 -1.2 184,802 + PfGW456L13_159 0.71 +1.4 184,802 + PfGW456L13_159 0.71 -0.8 184,803 - PfGW456L13_159 0.72 +2.7 184,803 - PfGW456L13_159 0.72 +0.1 184,803 - PfGW456L13_159 0.72 +2.7 184,803 - PfGW456L13_159 0.72 +2.2 184,803 - PfGW456L13_159 0.72 +2.3 184,852 + PfGW456L13_159 0.75 -1.1 184,852 + PfGW456L13_159 0.75 +0.3 184,852 + PfGW456L13_159 0.75 -0.3 184,852 + PfGW456L13_159 0.75 -0.9 184,852 + PfGW456L13_159 0.75 -1.0 184,853 - PfGW456L13_159 0.75 +2.5 184,853 - PfGW456L13_159 0.75 +2.4 184,853 - PfGW456L13_159 0.75 +1.1 184,853 - PfGW456L13_159 0.75 +2.2 184,853 - PfGW456L13_159 0.75 +1.7 184,853 - PfGW456L13_159 0.75 +2.7 184,853 - PfGW456L13_159 0.75 +2.0 184,853 - PfGW456L13_159 0.75 +2.5 184,946 - PfGW456L13_159 0.81 +1.0 185,190 + -0.8 185,190 + -1.5 185,190 + -1.1 185,190 + -1.2 185,190 + -2.2 185,191 - +0.7 185,191 - +1.5 185,191 - +2.0 185,192 + -1.0 185,192 + -1.0 185,192 + -0.2 185,192 + -0.4 185,192 + -1.2 185,192 + +0.4 185,192 + -0.4 185,192 + -0.8 185,193 - +2.1 185,193 - +3.0 185,193 - +2.0 185,193 - +2.4 185,193 - +1.6 185,193 - +2.2 185,193 - +1.8 185,193 - +2.4 185,193 - +2.1 185,193 - +1.7 185,193 - +2.3 185,207 - +1.6 185,207 - +2.7 185,218 - +1.6 185,218 - +2.1 185,218 - +2.2 185,218 - +2.0 185,218 - +1.8 185,260 + -0.4 185,260 + -1.3 185,260 + +0.3 185,260 + -1.2 185,260 + -0.2 185,260 + +0.7 185,261 - +2.8 185,261 - +3.3 185,261 - +3.2 185,261 - +2.3 185,261 - +2.6 185,261 - +3.3 185,262 + -0.5 185,262 + +0.5 185,262 + -2.2 185,262 + +0.8 185,263 - +2.9 185,263 - +2.0 185,263 - +4.3 185,263 - +4.0 185,302 - +2.6 185,304 + +0.8 185,304 + +0.1 185,305 - +2.6 185,455 + PfGW456L13_160 0.15 +1.9 185,455 + PfGW456L13_160 0.15 +1.4 185,455 + PfGW456L13_160 0.15 +0.4 185,455 + PfGW456L13_160 0.15 +1.4 185,455 + PfGW456L13_160 0.15 +1.0 185,455 + PfGW456L13_160 0.15 +1.2 185,455 + PfGW456L13_160 0.15 +0.9 185,456 - PfGW456L13_160 0.15 +2.7 185,456 - PfGW456L13_160 0.15 +3.6 185,456 - PfGW456L13_160 0.15 +1.7 185,456 - PfGW456L13_160 0.15 +2.9 185,456 - PfGW456L13_160 0.15 +2.8 185,456 - PfGW456L13_160 0.15 +3.6 185,456 - PfGW456L13_160 0.15 +2.4 185,456 - PfGW456L13_160 0.15 +2.8 185,539 + PfGW456L13_160 0.23 +1.0 185,539 + PfGW456L13_160 0.23 -1.7 185,539 + PfGW456L13_160 0.23 -0.2 185,539 + PfGW456L13_160 0.23 +1.2 185,539 + PfGW456L13_160 0.23 -0.0 185,540 - PfGW456L13_160 0.23 +2.4 185,540 - PfGW456L13_160 0.23 +3.0 185,593 + PfGW456L13_160 0.28 -0.6 185,594 - PfGW456L13_160 0.28 +3.6 185,623 + PfGW456L13_160 0.31 +1.1 185,624 - PfGW456L13_160 0.31 +3.2 185,775 + PfGW456L13_160 0.45 +1.0 185,775 + PfGW456L13_160 0.45 +0.7 185,776 - PfGW456L13_160 0.45 +2.8 185,933 - PfGW456L13_160 0.59 +2.6 185,933 - PfGW456L13_160 0.59 +2.7 185,963 - PfGW456L13_160 0.62 +2.1 186,311 + +0.5 186,311 + +0.6 186,311 + +1.4 186,312 - +0.9 186,370 + +0.2 186,370 + +1.0 186,370 + -0.1 186,371 - +1.4 186,371 - +1.6 186,465 + PfGW456L13_161 0.18 +0.7 186,475 + PfGW456L13_161 0.20 -0.6 186,475 + PfGW456L13_161 0.20 -1.5 186,476 - PfGW456L13_161 0.20 +0.4 186,476 - PfGW456L13_161 0.20 +1.2 186,476 - PfGW456L13_161 0.20 +0.8 186,476 - PfGW456L13_161 0.20 +0.3 186,476 - PfGW456L13_161 0.20 -0.1 186,490 + PfGW456L13_161 0.22 +0.6 186,490 + PfGW456L13_161 0.22 -0.2 186,490 + PfGW456L13_161 0.22 -1.8 186,490 + PfGW456L13_161 0.22 +0.0 186,490 + PfGW456L13_161 0.22 +1.3 186,490 + PfGW456L13_161 0.22 +0.4 186,490 + PfGW456L13_161 0.22 -0.4 186,490 + PfGW456L13_161 0.22 -0.7 186,490 + PfGW456L13_161 0.22 +0.7 186,490 + PfGW456L13_161 0.22 +0.2 186,490 + PfGW456L13_161 0.22 +0.0 186,490 + PfGW456L13_161 0.22 +0.8 186,490 + PfGW456L13_161 0.22 +0.4 186,491 - PfGW456L13_161 0.22 +0.5 186,491 - PfGW456L13_161 0.22 -1.1 186,491 - PfGW456L13_161 0.22 +0.1 186,491 - PfGW456L13_161 0.22 -0.7 186,491 - PfGW456L13_161 0.22 +1.0 186,491 - PfGW456L13_161 0.22 +0.7 186,491 - PfGW456L13_161 0.22 +0.6 186,491 - PfGW456L13_161 0.22 +0.4 186,491 - PfGW456L13_161 0.22 +0.2 186,524 - PfGW456L13_161 0.28 +0.6 186,524 - PfGW456L13_161 0.28 +0.9 186,552 - PfGW456L13_161 0.32 +0.7 186,737 + PfGW456L13_161 0.63 -0.0 186,738 - PfGW456L13_161 0.63 +0.7 186,779 - PfGW456L13_161 0.69 +0.3 186,949 + -0.6 186,966 - -0.2 186,997 + -1.1 186,998 - +0.3 186,998 - +0.5 187,051 + -0.8 187,051 + +0.7 187,051 + -0.2 187,051 + +0.1 187,051 + +0.6 187,051 + -0.4 187,051 + -0.1 187,051 + -0.4 187,051 + +0.2 187,051 + +0.2 187,051 + -0.6 187,051 + -0.3 187,052 - -0.5 187,052 - -1.7 187,052 - +0.8 187,052 - -0.1 187,052 - +0.6 187,052 - -0.2 187,052 - +1.0 187,052 - -0.3 187,052 - +0.1 187,052 - +1.1 187,052 - -0.8 187,052 - +0.4 187,052 - +0.8 187,052 - +0.1 187,052 - +0.2 187,052 - +0.7
Or see this region's nucleotide sequence