Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_151 and PfGW456L13_152 overlap by 1 nucleotides PfGW456L13_152 and PfGW456L13_153 are separated by 96 nucleotides
PfGW456L13_151 - HflC protein, at 175,154 to 176,023
_151
PfGW456L13_152 - HflK protein, at 176,023 to 177,198
_152
PfGW456L13_153 - GTP-binding protein HflX, at 177,295 to 178,596
_153
Position (kb) 176
177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 175.078 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.116 kb on + strand at 175.116 kb on + strand at 175.177 kb on - strand at 175.177 kb on - strand at 175.260 kb on + strand, within PfGW456L13_151 at 175.261 kb on - strand, within PfGW456L13_151 at 175.269 kb on + strand, within PfGW456L13_151 at 175.269 kb on + strand, within PfGW456L13_151 at 175.270 kb on - strand, within PfGW456L13_151 at 175.302 kb on + strand, within PfGW456L13_151 at 175.582 kb on + strand, within PfGW456L13_151 at 175.723 kb on - strand, within PfGW456L13_151 at 175.723 kb on - strand, within PfGW456L13_151 at 175.723 kb on - strand, within PfGW456L13_151 at 175.725 kb on + strand, within PfGW456L13_151 at 175.953 kb on + strand at 175.954 kb on - strand at 175.954 kb on - strand at 175.954 kb on - strand at 176.015 kb on - strand at 176.040 kb on + strand at 176.041 kb on - strand at 176.418 kb on - strand, within PfGW456L13_152 at 176.418 kb on - strand, within PfGW456L13_152 at 176.515 kb on + strand, within PfGW456L13_152 at 176.736 kb on - strand, within PfGW456L13_152 at 176.736 kb on - strand, within PfGW456L13_152 at 176.736 kb on - strand, within PfGW456L13_152 at 176.832 kb on - strand, within PfGW456L13_152 at 176.832 kb on - strand, within PfGW456L13_152 at 176.832 kb on - strand, within PfGW456L13_152 at 176.832 kb on - strand, within PfGW456L13_152 at 176.832 kb on - strand, within PfGW456L13_152 at 176.856 kb on - strand, within PfGW456L13_152 at 176.856 kb on - strand, within PfGW456L13_152 at 176.856 kb on - strand, within PfGW456L13_152 at 176.856 kb on - strand, within PfGW456L13_152 at 176.886 kb on - strand, within PfGW456L13_152 at 176.886 kb on - strand, within PfGW456L13_152 at 176.889 kb on - strand, within PfGW456L13_152 at 176.889 kb on - strand, within PfGW456L13_152 at 176.937 kb on - strand, within PfGW456L13_152 at 177.253 kb on - strand at 177.297 kb on - strand at 177.646 kb on - strand, within PfGW456L13_153 at 177.646 kb on - strand, within PfGW456L13_153 at 177.647 kb on + strand, within PfGW456L13_153 at 177.648 kb on - strand, within PfGW456L13_153 at 177.648 kb on - strand, within PfGW456L13_153 at 177.648 kb on - strand, within PfGW456L13_153 at 177.648 kb on - strand, within PfGW456L13_153 at 177.648 kb on - strand, within PfGW456L13_153 at 177.787 kb on - strand, within PfGW456L13_153 at 177.978 kb on + strand, within PfGW456L13_153 at 177.978 kb on + strand, within PfGW456L13_153 at 177.978 kb on + strand, within PfGW456L13_153 at 177.978 kb on + strand, within PfGW456L13_153 at 177.979 kb on - strand, within PfGW456L13_153 at 177.979 kb on - strand, within PfGW456L13_153 at 177.979 kb on - strand, within PfGW456L13_153 at 177.979 kb on - strand, within PfGW456L13_153 at 178.195 kb on - strand, within PfGW456L13_153 at 178.195 kb on - strand, within PfGW456L13_153 at 178.195 kb on - strand, within PfGW456L13_153
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 175,078 - +0.8 175,078 - +1.0 175,078 - +0.1 175,078 - +1.3 175,078 - +1.2 175,078 - +0.6 175,078 - -0.9 175,078 - -0.6 175,078 - +0.5 175,116 + -0.2 175,116 + +0.7 175,177 - +1.1 175,177 - -0.2 175,260 + PfGW456L13_151 0.12 -1.0 175,261 - PfGW456L13_151 0.12 +1.1 175,269 + PfGW456L13_151 0.13 -1.7 175,269 + PfGW456L13_151 0.13 +0.8 175,270 - PfGW456L13_151 0.13 -0.6 175,302 + PfGW456L13_151 0.17 +1.1 175,582 + PfGW456L13_151 0.49 +1.1 175,723 - PfGW456L13_151 0.65 +1.3 175,723 - PfGW456L13_151 0.65 -3.0 175,723 - PfGW456L13_151 0.65 -2.3 175,725 + PfGW456L13_151 0.66 -0.5 175,953 + +0.1 175,954 - -0.3 175,954 - +0.3 175,954 - -0.6 176,015 - -0.9 176,040 + -0.3 176,041 - -1.7 176,418 - PfGW456L13_152 0.34 -0.3 176,418 - PfGW456L13_152 0.34 -1.0 176,515 + PfGW456L13_152 0.42 -0.1 176,736 - PfGW456L13_152 0.61 -1.7 176,736 - PfGW456L13_152 0.61 +0.4 176,736 - PfGW456L13_152 0.61 -0.5 176,832 - PfGW456L13_152 0.69 -0.7 176,832 - PfGW456L13_152 0.69 -0.8 176,832 - PfGW456L13_152 0.69 -0.9 176,832 - PfGW456L13_152 0.69 -0.5 176,832 - PfGW456L13_152 0.69 -0.1 176,856 - PfGW456L13_152 0.71 -0.6 176,856 - PfGW456L13_152 0.71 -2.3 176,856 - PfGW456L13_152 0.71 +0.3 176,856 - PfGW456L13_152 0.71 -1.7 176,886 - PfGW456L13_152 0.73 -1.1 176,886 - PfGW456L13_152 0.73 -1.2 176,889 - PfGW456L13_152 0.74 +0.8 176,889 - PfGW456L13_152 0.74 +0.9 176,937 - PfGW456L13_152 0.78 -0.6 177,253 - +0.3 177,297 - -0.0 177,646 - PfGW456L13_153 0.27 +0.4 177,646 - PfGW456L13_153 0.27 +0.3 177,647 + PfGW456L13_153 0.27 -1.9 177,648 - PfGW456L13_153 0.27 +1.0 177,648 - PfGW456L13_153 0.27 +0.3 177,648 - PfGW456L13_153 0.27 +1.3 177,648 - PfGW456L13_153 0.27 +1.1 177,648 - PfGW456L13_153 0.27 +0.5 177,787 - PfGW456L13_153 0.38 +1.1 177,978 + PfGW456L13_153 0.52 -1.2 177,978 + PfGW456L13_153 0.52 -0.6 177,978 + PfGW456L13_153 0.52 +0.7 177,978 + PfGW456L13_153 0.52 +0.5 177,979 - PfGW456L13_153 0.53 -0.9 177,979 - PfGW456L13_153 0.53 +0.6 177,979 - PfGW456L13_153 0.53 +0.5 177,979 - PfGW456L13_153 0.53 +0.2 178,195 - PfGW456L13_153 0.69 +1.0 178,195 - PfGW456L13_153 0.69 +0.4 178,195 - PfGW456L13_153 0.69 +1.8
Or see this region's nucleotide sequence