Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_118

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_117 and PfGW456L13_118 are separated by 128 nucleotidesPfGW456L13_118 and PfGW456L13_119 are separated by 13 nucleotidesPfGW456L13_119 and PfGW456L13_120 are separated by 352 nucleotides PfGW456L13_117 - Oxidoreductase, short chain dehydrogenase/reductase family, at 134,357 to 135,118 _117 PfGW456L13_118 - hypothetical protein, at 135,247 to 135,402 _118 PfGW456L13_119 - hypothetical protein, at 135,416 to 135,604 _119 PfGW456L13_120 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 135,957 to 136,673 _120 Position (kb) 135 136Strain fitness (log2 ratio) -2 -1 0 1 2at 134.267 kb on + strandat 134.267 kb on + strandat 134.284 kb on + strandat 134.284 kb on + strandat 134.284 kb on + strandat 134.284 kb on + strandat 134.284 kb on + strandat 134.285 kb on - strandat 134.285 kb on - strandat 134.285 kb on - strandat 134.285 kb on - strandat 134.285 kb on - strandat 134.285 kb on - strandat 134.358 kb on + strandat 134.358 kb on + strandat 134.358 kb on + strandat 134.359 kb on - strandat 134.359 kb on - strandat 134.359 kb on - strandat 134.365 kb on + strandat 134.365 kb on + strandat 134.365 kb on + strandat 134.366 kb on - strandat 134.366 kb on - strandat 134.366 kb on - strandat 134.366 kb on - strandat 134.366 kb on - strandat 134.366 kb on - strandat 134.366 kb on - strandat 134.366 kb on - strandat 134.505 kb on + strand, within PfGW456L13_117at 134.505 kb on + strand, within PfGW456L13_117at 134.505 kb on + strand, within PfGW456L13_117at 134.506 kb on - strand, within PfGW456L13_117at 134.506 kb on - strand, within PfGW456L13_117at 134.506 kb on - strand, within PfGW456L13_117at 134.506 kb on - strand, within PfGW456L13_117at 134.506 kb on - strand, within PfGW456L13_117at 134.506 kb on - strand, within PfGW456L13_117at 134.506 kb on - strand, within PfGW456L13_117at 134.664 kb on + strand, within PfGW456L13_117at 134.664 kb on + strand, within PfGW456L13_117at 134.664 kb on + strand, within PfGW456L13_117at 134.664 kb on + strand, within PfGW456L13_117at 134.664 kb on + strand, within PfGW456L13_117at 134.665 kb on - strand, within PfGW456L13_117at 134.665 kb on - strand, within PfGW456L13_117at 134.665 kb on - strand, within PfGW456L13_117at 134.665 kb on - strand, within PfGW456L13_117at 134.688 kb on + strand, within PfGW456L13_117at 134.689 kb on - strand, within PfGW456L13_117at 134.689 kb on - strand, within PfGW456L13_117at 134.689 kb on - strand, within PfGW456L13_117at 134.772 kb on + strand, within PfGW456L13_117at 134.772 kb on + strand, within PfGW456L13_117at 134.772 kb on + strand, within PfGW456L13_117at 134.772 kb on + strand, within PfGW456L13_117at 134.772 kb on + strand, within PfGW456L13_117at 134.772 kb on + strand, within PfGW456L13_117at 134.772 kb on + strand, within PfGW456L13_117at 134.772 kb on + strand, within PfGW456L13_117at 134.773 kb on - strand, within PfGW456L13_117at 134.773 kb on - strand, within PfGW456L13_117at 134.773 kb on - strand, within PfGW456L13_117at 134.773 kb on - strand, within PfGW456L13_117at 134.795 kb on - strand, within PfGW456L13_117at 135.100 kb on + strandat 135.100 kb on + strandat 135.100 kb on + strandat 135.100 kb on + strandat 135.100 kb on + strandat 135.100 kb on + strandat 135.100 kb on + strandat 135.263 kb on - strand, within PfGW456L13_118at 135.263 kb on - strand, within PfGW456L13_118at 135.263 kb on - strand, within PfGW456L13_118at 135.628 kb on + strandat 135.629 kb on - strandat 135.629 kb on - strandat 135.715 kb on - strandat 135.715 kb on - strandat 135.715 kb on - strandat 135.729 kb on + strandat 135.730 kb on - strandat 135.730 kb on - strandat 135.897 kb on + strandat 135.898 kb on - strandat 135.898 kb on - strandat 135.898 kb on - strandat 135.898 kb on - strandat 135.944 kb on + strandat 135.945 kb on - strandat 135.980 kb on + strandat 136.051 kb on + strand, within PfGW456L13_120at 136.051 kb on + strand, within PfGW456L13_120at 136.051 kb on + strand, within PfGW456L13_120at 136.051 kb on + strand, within PfGW456L13_120at 136.052 kb on - strand, within PfGW456L13_120at 136.339 kb on + strand, within PfGW456L13_120at 136.340 kb on - strand, within PfGW456L13_120at 136.340 kb on - strand, within PfGW456L13_120at 136.340 kb on - strand, within PfGW456L13_120at 136.359 kb on - strand, within PfGW456L13_120at 136.359 kb on - strand, within PfGW456L13_120at 136.388 kb on + strand, within PfGW456L13_120

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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134,267 + -0.2
134,267 + +0.1
134,284 + -0.2
134,284 + +0.2
134,284 + -0.1
134,284 + -1.8
134,284 + +0.3
134,285 - -0.0
134,285 - +0.6
134,285 - +0.1
134,285 - -0.9
134,285 - +0.4
134,285 - -0.3
134,358 + -0.1
134,358 + -0.8
134,358 + +0.6
134,359 - -0.2
134,359 - -0.5
134,359 - +0.4
134,365 + -0.4
134,365 + -0.5
134,365 + +0.4
134,366 - -0.3
134,366 - +0.4
134,366 - +0.3
134,366 - +1.0
134,366 - +0.4
134,366 - +0.8
134,366 - -0.6
134,366 - +0.2
134,505 + PfGW456L13_117 0.19 -1.4
134,505 + PfGW456L13_117 0.19 -0.4
134,505 + PfGW456L13_117 0.19 -0.4
134,506 - PfGW456L13_117 0.20 -0.9
134,506 - PfGW456L13_117 0.20 +0.3
134,506 - PfGW456L13_117 0.20 +1.0
134,506 - PfGW456L13_117 0.20 +0.8
134,506 - PfGW456L13_117 0.20 -0.8
134,506 - PfGW456L13_117 0.20 -0.2
134,506 - PfGW456L13_117 0.20 +0.1
134,664 + PfGW456L13_117 0.40 -0.4
134,664 + PfGW456L13_117 0.40 -0.2
134,664 + PfGW456L13_117 0.40 +0.4
134,664 + PfGW456L13_117 0.40 -1.7
134,664 + PfGW456L13_117 0.40 -0.1
134,665 - PfGW456L13_117 0.40 +0.3
134,665 - PfGW456L13_117 0.40 +0.7
134,665 - PfGW456L13_117 0.40 -0.1
134,665 - PfGW456L13_117 0.40 -1.7
134,688 + PfGW456L13_117 0.43 -0.4
134,689 - PfGW456L13_117 0.44 +0.4
134,689 - PfGW456L13_117 0.44 -0.0
134,689 - PfGW456L13_117 0.44 -0.3
134,772 + PfGW456L13_117 0.54 +0.7
134,772 + PfGW456L13_117 0.54 +0.4
134,772 + PfGW456L13_117 0.54 -0.3
134,772 + PfGW456L13_117 0.54 +0.1
134,772 + PfGW456L13_117 0.54 +0.1
134,772 + PfGW456L13_117 0.54 +0.3
134,772 + PfGW456L13_117 0.54 +1.8
134,772 + PfGW456L13_117 0.54 -0.3
134,773 - PfGW456L13_117 0.55 +0.9
134,773 - PfGW456L13_117 0.55 +0.7
134,773 - PfGW456L13_117 0.55 -0.2
134,773 - PfGW456L13_117 0.55 +0.1
134,795 - PfGW456L13_117 0.57 -1.0
135,100 + -1.2
135,100 + -0.1
135,100 + +0.0
135,100 + +0.5
135,100 + -2.3
135,100 + +0.2
135,100 + -1.7
135,263 - PfGW456L13_118 0.10 -1.8
135,263 - PfGW456L13_118 0.10 +0.2
135,263 - PfGW456L13_118 0.10 -0.5
135,628 + -0.6
135,629 - +0.3
135,629 - +0.5
135,715 - +0.6
135,715 - +0.5
135,715 - +0.5
135,729 + +0.1
135,730 - +0.2
135,730 - +0.5
135,897 + +0.2
135,898 - -0.1
135,898 - +0.0
135,898 - +0.2
135,898 - +0.6
135,944 + +0.2
135,945 - +0.2
135,980 + +1.0
136,051 + PfGW456L13_120 0.13 -0.2
136,051 + PfGW456L13_120 0.13 -0.0
136,051 + PfGW456L13_120 0.13 -0.4
136,051 + PfGW456L13_120 0.13 -0.0
136,052 - PfGW456L13_120 0.13 +0.7
136,339 + PfGW456L13_120 0.53 -1.1
136,340 - PfGW456L13_120 0.53 -1.0
136,340 - PfGW456L13_120 0.53 -0.4
136,340 - PfGW456L13_120 0.53 -1.1
136,359 - PfGW456L13_120 0.56 +0.2
136,359 - PfGW456L13_120 0.56 -2.1
136,388 + PfGW456L13_120 0.60 +1.3

Or see this region's nucleotide sequence