Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1108

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1106 and PfGW456L13_1107 are separated by 193 nucleotidesPfGW456L13_1107 and PfGW456L13_1108 are separated by 147 nucleotidesPfGW456L13_1108 and PfGW456L13_1109 overlap by 38 nucleotides PfGW456L13_1106 - Electron transfer flavoprotein, beta subunit, at 1,228,617 to 1,229,387 _1106 PfGW456L13_1107 - acetyltransferase, GNAT family, at 1,229,581 to 1,230,147 _1107 PfGW456L13_1108 - hypothetical protein, at 1,230,295 to 1,230,420 _1108 PfGW456L13_1109 - hypothetical protein, at 1,230,383 to 1,231,531 _1109 Position (kb) 1230 1231Strain fitness (log2 ratio) -2 -1 0 1 2at 1229.412 kb on + strandat 1229.412 kb on + strandat 1229.413 kb on - strandat 1229.506 kb on + strandat 1229.507 kb on - strandat 1229.507 kb on - strandat 1229.507 kb on - strandat 1229.532 kb on - strandat 1229.560 kb on - strandat 1229.668 kb on + strand, within PfGW456L13_1107at 1229.668 kb on + strand, within PfGW456L13_1107at 1229.668 kb on + strand, within PfGW456L13_1107at 1229.669 kb on - strand, within PfGW456L13_1107at 1229.669 kb on - strand, within PfGW456L13_1107at 1229.669 kb on - strand, within PfGW456L13_1107at 1229.729 kb on - strand, within PfGW456L13_1107at 1229.812 kb on + strand, within PfGW456L13_1107at 1229.812 kb on + strand, within PfGW456L13_1107at 1229.812 kb on + strand, within PfGW456L13_1107at 1229.812 kb on + strand, within PfGW456L13_1107at 1229.812 kb on + strand, within PfGW456L13_1107at 1229.812 kb on + strand, within PfGW456L13_1107at 1229.812 kb on + strand, within PfGW456L13_1107at 1229.812 kb on + strand, within PfGW456L13_1107at 1229.812 kb on + strand, within PfGW456L13_1107at 1229.812 kb on + strand, within PfGW456L13_1107at 1229.813 kb on - strand, within PfGW456L13_1107at 1229.813 kb on - strand, within PfGW456L13_1107at 1229.859 kb on - strand, within PfGW456L13_1107at 1229.870 kb on - strand, within PfGW456L13_1107at 1229.870 kb on - strand, within PfGW456L13_1107at 1229.870 kb on - strand, within PfGW456L13_1107at 1229.870 kb on - strand, within PfGW456L13_1107at 1229.899 kb on + strand, within PfGW456L13_1107at 1229.899 kb on + strand, within PfGW456L13_1107at 1229.899 kb on + strand, within PfGW456L13_1107at 1229.899 kb on + strand, within PfGW456L13_1107at 1229.899 kb on + strand, within PfGW456L13_1107at 1229.899 kb on + strand, within PfGW456L13_1107at 1229.899 kb on + strand, within PfGW456L13_1107at 1229.899 kb on + strand, within PfGW456L13_1107at 1229.899 kb on + strand, within PfGW456L13_1107at 1229.899 kb on + strand, within PfGW456L13_1107at 1229.899 kb on + strand, within PfGW456L13_1107at 1229.900 kb on - strand, within PfGW456L13_1107at 1229.900 kb on - strand, within PfGW456L13_1107at 1229.900 kb on - strand, within PfGW456L13_1107at 1229.900 kb on - strand, within PfGW456L13_1107at 1229.900 kb on - strand, within PfGW456L13_1107at 1229.900 kb on - strand, within PfGW456L13_1107at 1229.900 kb on - strand, within PfGW456L13_1107at 1229.900 kb on - strand, within PfGW456L13_1107at 1229.900 kb on - strand, within PfGW456L13_1107at 1229.900 kb on - strand, within PfGW456L13_1107at 1229.900 kb on - strand, within PfGW456L13_1107at 1229.900 kb on - strand, within PfGW456L13_1107at 1229.900 kb on - strand, within PfGW456L13_1107at 1229.901 kb on + strand, within PfGW456L13_1107at 1229.901 kb on + strand, within PfGW456L13_1107at 1229.901 kb on + strand, within PfGW456L13_1107at 1229.901 kb on + strand, within PfGW456L13_1107at 1229.901 kb on + strand, within PfGW456L13_1107at 1229.901 kb on + strand, within PfGW456L13_1107at 1229.901 kb on + strand, within PfGW456L13_1107at 1229.902 kb on - strand, within PfGW456L13_1107at 1229.902 kb on - strand, within PfGW456L13_1107at 1229.902 kb on - strand, within PfGW456L13_1107at 1229.902 kb on - strand, within PfGW456L13_1107at 1229.902 kb on - strand, within PfGW456L13_1107at 1229.902 kb on - strand, within PfGW456L13_1107at 1230.019 kb on + strand, within PfGW456L13_1107at 1230.128 kb on - strandat 1230.132 kb on + strandat 1230.133 kb on - strandat 1230.133 kb on - strandat 1230.133 kb on - strandat 1230.162 kb on + strandat 1230.226 kb on - strandat 1230.236 kb on - strandat 1230.264 kb on + strandat 1230.310 kb on + strand, within PfGW456L13_1108at 1230.310 kb on + strand, within PfGW456L13_1108at 1230.431 kb on + strandat 1230.432 kb on - strandat 1230.432 kb on - strandat 1230.432 kb on - strandat 1230.502 kb on - strand, within PfGW456L13_1109at 1230.502 kb on - strand, within PfGW456L13_1109at 1230.587 kb on + strand, within PfGW456L13_1109at 1230.587 kb on + strand, within PfGW456L13_1109at 1230.588 kb on - strand, within PfGW456L13_1109at 1230.590 kb on + strand, within PfGW456L13_1109at 1230.590 kb on + strand, within PfGW456L13_1109at 1230.590 kb on + strand, within PfGW456L13_1109at 1230.590 kb on + strand, within PfGW456L13_1109at 1230.590 kb on + strand, within PfGW456L13_1109at 1230.590 kb on + strand, within PfGW456L13_1109at 1230.591 kb on - strand, within PfGW456L13_1109at 1230.683 kb on - strand, within PfGW456L13_1109at 1230.683 kb on - strand, within PfGW456L13_1109at 1230.752 kb on + strand, within PfGW456L13_1109at 1230.752 kb on + strand, within PfGW456L13_1109at 1230.753 kb on - strand, within PfGW456L13_1109at 1230.753 kb on - strand, within PfGW456L13_1109at 1230.753 kb on - strand, within PfGW456L13_1109at 1230.767 kb on + strand, within PfGW456L13_1109at 1230.767 kb on + strand, within PfGW456L13_1109at 1230.767 kb on + strand, within PfGW456L13_1109at 1230.768 kb on - strand, within PfGW456L13_1109at 1230.768 kb on - strand, within PfGW456L13_1109at 1230.768 kb on - strand, within PfGW456L13_1109at 1230.768 kb on - strand, within PfGW456L13_1109at 1230.768 kb on - strand, within PfGW456L13_1109at 1230.768 kb on - strand, within PfGW456L13_1109at 1230.793 kb on + strand, within PfGW456L13_1109at 1230.793 kb on + strand, within PfGW456L13_1109at 1230.794 kb on - strand, within PfGW456L13_1109at 1230.794 kb on - strand, within PfGW456L13_1109at 1230.923 kb on + strand, within PfGW456L13_1109at 1230.936 kb on - strand, within PfGW456L13_1109at 1231.036 kb on + strand, within PfGW456L13_1109at 1231.037 kb on - strand, within PfGW456L13_1109at 1231.084 kb on - strand, within PfGW456L13_1109at 1231.084 kb on - strand, within PfGW456L13_1109at 1231.084 kb on - strand, within PfGW456L13_1109at 1231.105 kb on + strandat 1231.105 kb on + strand, within PfGW456L13_1109at 1231.106 kb on - strand, within PfGW456L13_1109at 1231.176 kb on + strand, within PfGW456L13_1109at 1231.176 kb on + strand, within PfGW456L13_1109at 1231.177 kb on - strand, within PfGW456L13_1109at 1231.177 kb on - strand, within PfGW456L13_1109at 1231.177 kb on - strand, within PfGW456L13_1109at 1231.239 kb on - strand, within PfGW456L13_1109at 1231.310 kb on + strand, within PfGW456L13_1109at 1231.310 kb on + strand, within PfGW456L13_1109at 1231.310 kb on + strand, within PfGW456L13_1109at 1231.311 kb on - strand, within PfGW456L13_1109at 1231.385 kb on + strand, within PfGW456L13_1109at 1231.385 kb on + strand, within PfGW456L13_1109at 1231.385 kb on + strand, within PfGW456L13_1109at 1231.386 kb on - strand, within PfGW456L13_1109at 1231.386 kb on - strand, within PfGW456L13_1109at 1231.386 kb on - strand, within PfGW456L13_1109at 1231.386 kb on - strand, within PfGW456L13_1109at 1231.386 kb on - strand, within PfGW456L13_1109at 1231.391 kb on + strand, within PfGW456L13_1109at 1231.391 kb on + strand, within PfGW456L13_1109at 1231.391 kb on + strand, within PfGW456L13_1109at 1231.391 kb on + strand, within PfGW456L13_1109at 1231.391 kb on + strand, within PfGW456L13_1109at 1231.391 kb on + strand, within PfGW456L13_1109at 1231.392 kb on - strand, within PfGW456L13_1109at 1231.392 kb on - strand, within PfGW456L13_1109at 1231.392 kb on - strand, within PfGW456L13_1109at 1231.392 kb on - strand, within PfGW456L13_1109at 1231.392 kb on - strand, within PfGW456L13_1109at 1231.392 kb on - strand, within PfGW456L13_1109at 1231.392 kb on - strand, within PfGW456L13_1109at 1231.392 kb on - strand, within PfGW456L13_1109at 1231.392 kb on - strand, within PfGW456L13_1109at 1231.392 kb on - strand, within PfGW456L13_1109at 1231.392 kb on - strand, within PfGW456L13_1109at 1231.392 kb on - strand, within PfGW456L13_1109at 1231.392 kb on - strand, within PfGW456L13_1109at 1231.392 kb on - strand, within PfGW456L13_1109at 1231.394 kb on + strand, within PfGW456L13_1109

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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1,229,412 + -1.4
1,229,412 + +0.0
1,229,413 - -0.2
1,229,506 + +0.7
1,229,507 - -0.9
1,229,507 - +0.2
1,229,507 - +0.5
1,229,532 - +0.1
1,229,560 - +0.3
1,229,668 + PfGW456L13_1107 0.15 +0.1
1,229,668 + PfGW456L13_1107 0.15 +0.3
1,229,668 + PfGW456L13_1107 0.15 -0.2
1,229,669 - PfGW456L13_1107 0.16 +0.3
1,229,669 - PfGW456L13_1107 0.16 -1.2
1,229,669 - PfGW456L13_1107 0.16 -0.9
1,229,729 - PfGW456L13_1107 0.26 -0.6
1,229,812 + PfGW456L13_1107 0.41 -0.3
1,229,812 + PfGW456L13_1107 0.41 +0.4
1,229,812 + PfGW456L13_1107 0.41 +0.3
1,229,812 + PfGW456L13_1107 0.41 -0.3
1,229,812 + PfGW456L13_1107 0.41 -0.7
1,229,812 + PfGW456L13_1107 0.41 +0.1
1,229,812 + PfGW456L13_1107 0.41 -0.7
1,229,812 + PfGW456L13_1107 0.41 -0.5
1,229,812 + PfGW456L13_1107 0.41 +0.0
1,229,812 + PfGW456L13_1107 0.41 +0.5
1,229,813 - PfGW456L13_1107 0.41 -0.1
1,229,813 - PfGW456L13_1107 0.41 +0.4
1,229,859 - PfGW456L13_1107 0.49 +0.3
1,229,870 - PfGW456L13_1107 0.51 +0.2
1,229,870 - PfGW456L13_1107 0.51 +1.1
1,229,870 - PfGW456L13_1107 0.51 +0.2
1,229,870 - PfGW456L13_1107 0.51 -1.2
1,229,899 + PfGW456L13_1107 0.56 +0.3
1,229,899 + PfGW456L13_1107 0.56 +0.5
1,229,899 + PfGW456L13_1107 0.56 +0.7
1,229,899 + PfGW456L13_1107 0.56 -0.1
1,229,899 + PfGW456L13_1107 0.56 -0.1
1,229,899 + PfGW456L13_1107 0.56 +0.6
1,229,899 + PfGW456L13_1107 0.56 -0.4
1,229,899 + PfGW456L13_1107 0.56 +0.1
1,229,899 + PfGW456L13_1107 0.56 -0.5
1,229,899 + PfGW456L13_1107 0.56 +0.9
1,229,899 + PfGW456L13_1107 0.56 -0.2
1,229,900 - PfGW456L13_1107 0.56 +0.3
1,229,900 - PfGW456L13_1107 0.56 -0.2
1,229,900 - PfGW456L13_1107 0.56 +0.2
1,229,900 - PfGW456L13_1107 0.56 +0.2
1,229,900 - PfGW456L13_1107 0.56 -1.6
1,229,900 - PfGW456L13_1107 0.56 -0.3
1,229,900 - PfGW456L13_1107 0.56 +1.3
1,229,900 - PfGW456L13_1107 0.56 +0.1
1,229,900 - PfGW456L13_1107 0.56 -0.0
1,229,900 - PfGW456L13_1107 0.56 -2.0
1,229,900 - PfGW456L13_1107 0.56 +0.5
1,229,900 - PfGW456L13_1107 0.56 -0.4
1,229,900 - PfGW456L13_1107 0.56 -1.5
1,229,901 + PfGW456L13_1107 0.56 -0.5
1,229,901 + PfGW456L13_1107 0.56 +0.2
1,229,901 + PfGW456L13_1107 0.56 +0.4
1,229,901 + PfGW456L13_1107 0.56 +0.5
1,229,901 + PfGW456L13_1107 0.56 -0.5
1,229,901 + PfGW456L13_1107 0.56 -0.3
1,229,901 + PfGW456L13_1107 0.56 +0.4
1,229,902 - PfGW456L13_1107 0.57 +0.5
1,229,902 - PfGW456L13_1107 0.57 +0.5
1,229,902 - PfGW456L13_1107 0.57 +0.4
1,229,902 - PfGW456L13_1107 0.57 +0.3
1,229,902 - PfGW456L13_1107 0.57 +0.2
1,229,902 - PfGW456L13_1107 0.57 -0.0
1,230,019 + PfGW456L13_1107 0.77 +0.7
1,230,128 - -0.2
1,230,132 + +0.1
1,230,133 - +0.4
1,230,133 - +1.1
1,230,133 - -0.7
1,230,162 + +0.3
1,230,226 - -0.0
1,230,236 - +0.2
1,230,264 + -0.7
1,230,310 + PfGW456L13_1108 0.12 -0.8
1,230,310 + PfGW456L13_1108 0.12 -1.0
1,230,431 + +0.6
1,230,432 - +0.7
1,230,432 - -0.4
1,230,432 - -0.4
1,230,502 - PfGW456L13_1109 0.10 -0.5
1,230,502 - PfGW456L13_1109 0.10 -0.1
1,230,587 + PfGW456L13_1109 0.18 -0.0
1,230,587 + PfGW456L13_1109 0.18 -0.1
1,230,588 - PfGW456L13_1109 0.18 -0.8
1,230,590 + PfGW456L13_1109 0.18 -0.1
1,230,590 + PfGW456L13_1109 0.18 -0.5
1,230,590 + PfGW456L13_1109 0.18 -0.4
1,230,590 + PfGW456L13_1109 0.18 -0.1
1,230,590 + PfGW456L13_1109 0.18 -0.7
1,230,590 + PfGW456L13_1109 0.18 -0.7
1,230,591 - PfGW456L13_1109 0.18 +0.7
1,230,683 - PfGW456L13_1109 0.26 -0.3
1,230,683 - PfGW456L13_1109 0.26 +0.3
1,230,752 + PfGW456L13_1109 0.32 -0.6
1,230,752 + PfGW456L13_1109 0.32 -0.8
1,230,753 - PfGW456L13_1109 0.32 +0.1
1,230,753 - PfGW456L13_1109 0.32 +0.1
1,230,753 - PfGW456L13_1109 0.32 -0.2
1,230,767 + PfGW456L13_1109 0.33 -0.2
1,230,767 + PfGW456L13_1109 0.33 +0.2
1,230,767 + PfGW456L13_1109 0.33 -0.2
1,230,768 - PfGW456L13_1109 0.34 +1.5
1,230,768 - PfGW456L13_1109 0.34 +0.4
1,230,768 - PfGW456L13_1109 0.34 +0.3
1,230,768 - PfGW456L13_1109 0.34 -0.3
1,230,768 - PfGW456L13_1109 0.34 -0.1
1,230,768 - PfGW456L13_1109 0.34 -0.4
1,230,793 + PfGW456L13_1109 0.36 -0.8
1,230,793 + PfGW456L13_1109 0.36 -1.5
1,230,794 - PfGW456L13_1109 0.36 +1.4
1,230,794 - PfGW456L13_1109 0.36 +0.8
1,230,923 + PfGW456L13_1109 0.47 -0.6
1,230,936 - PfGW456L13_1109 0.48 +0.8
1,231,036 + PfGW456L13_1109 0.57 +0.7
1,231,037 - PfGW456L13_1109 0.57 -0.1
1,231,084 - PfGW456L13_1109 0.61 -0.0
1,231,084 - PfGW456L13_1109 0.61 +1.1
1,231,084 - PfGW456L13_1109 0.61 +0.6
1,231,105 + +2.7
1,231,105 + PfGW456L13_1109 0.63 +0.9
1,231,106 - PfGW456L13_1109 0.63 +0.1
1,231,176 + PfGW456L13_1109 0.69 -0.8
1,231,176 + PfGW456L13_1109 0.69 -0.9
1,231,177 - PfGW456L13_1109 0.69 -0.1
1,231,177 - PfGW456L13_1109 0.69 -0.6
1,231,177 - PfGW456L13_1109 0.69 +0.5
1,231,239 - PfGW456L13_1109 0.74 -0.8
1,231,310 + PfGW456L13_1109 0.81 -0.0
1,231,310 + PfGW456L13_1109 0.81 +0.6
1,231,310 + PfGW456L13_1109 0.81 +0.1
1,231,311 - PfGW456L13_1109 0.81 -0.9
1,231,385 + PfGW456L13_1109 0.87 -0.5
1,231,385 + PfGW456L13_1109 0.87 +0.5
1,231,385 + PfGW456L13_1109 0.87 +1.3
1,231,386 - PfGW456L13_1109 0.87 -0.8
1,231,386 - PfGW456L13_1109 0.87 -0.2
1,231,386 - PfGW456L13_1109 0.87 +0.6
1,231,386 - PfGW456L13_1109 0.87 +0.1
1,231,386 - PfGW456L13_1109 0.87 -0.2
1,231,391 + PfGW456L13_1109 0.88 -0.2
1,231,391 + PfGW456L13_1109 0.88 -1.8
1,231,391 + PfGW456L13_1109 0.88 -1.9
1,231,391 + PfGW456L13_1109 0.88 -0.6
1,231,391 + PfGW456L13_1109 0.88 -0.8
1,231,391 + PfGW456L13_1109 0.88 +0.9
1,231,392 - PfGW456L13_1109 0.88 +0.9
1,231,392 - PfGW456L13_1109 0.88 -0.8
1,231,392 - PfGW456L13_1109 0.88 +0.4
1,231,392 - PfGW456L13_1109 0.88 -0.2
1,231,392 - PfGW456L13_1109 0.88 +0.1
1,231,392 - PfGW456L13_1109 0.88 +0.4
1,231,392 - PfGW456L13_1109 0.88 +0.0
1,231,392 - PfGW456L13_1109 0.88 +0.2
1,231,392 - PfGW456L13_1109 0.88 +0.6
1,231,392 - PfGW456L13_1109 0.88 +0.6
1,231,392 - PfGW456L13_1109 0.88 -0.0
1,231,392 - PfGW456L13_1109 0.88 +0.5
1,231,392 - PfGW456L13_1109 0.88 -0.6
1,231,392 - PfGW456L13_1109 0.88 -0.2
1,231,394 + PfGW456L13_1109 0.88 +0.1

Or see this region's nucleotide sequence