Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22485 and PS417_22490 are separated by 69 nucleotides PS417_22490 and PS417_22495 are separated by 3 nucleotides PS417_22495 and PS417_22500 are separated by 886 nucleotides
PS417_22485: PS417_22485 - cold-shock protein, at 4,867,692 to 4,868,294
_22485
PS417_22490: PS417_22490 - hypothetical protein, at 4,868,364 to 4,868,570
_22490
PS417_22495: PS417_22495 - histidine triad (HIT) protein, at 4,868,574 to 4,868,999
_22495
PS417_22500: PS417_22500 - porin, at 4,869,886 to 4,871,184
_22500
Position (kb)
4868
4869 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4867.674 kb on + strand at 4868.362 kb on + strand at 4868.365 kb on + strand at 4868.366 kb on - strand at 4868.368 kb on + strand at 4868.368 kb on + strand at 4868.368 kb on + strand at 4868.369 kb on - strand at 4868.369 kb on - strand at 4868.654 kb on - strand at 4868.745 kb on + strand, within PS417_22495 at 4868.745 kb on + strand, within PS417_22495 at 4868.746 kb on - strand, within PS417_22495 at 4868.988 kb on + strand at 4868.989 kb on - strand at 4869.364 kb on + strand at 4869.365 kb on - strand at 4869.418 kb on + strand at 4869.615 kb on - strand at 4869.718 kb on + strand at 4869.794 kb on - strand at 4869.794 kb on - strand at 4869.936 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 4,867,674 + +0.4 4,868,362 + -0.2 4,868,365 + -3.4 4,868,366 - -1.3 4,868,368 + +0.7 4,868,368 + +0.4 4,868,368 + -0.6 4,868,369 - -0.6 4,868,369 - +0.2 4,868,654 - +0.4 4,868,745 + PS417_22495 0.40 -0.7 4,868,745 + PS417_22495 0.40 -0.6 4,868,746 - PS417_22495 0.40 -1.1 4,868,988 + +0.2 4,868,989 - -0.9 4,869,364 + -0.1 4,869,365 - -0.5 4,869,418 + +0.4 4,869,615 - +2.4 4,869,718 + +0.1 4,869,794 - -0.1 4,869,794 - -0.5 4,869,936 + -0.2
Or see this region's nucleotide sequence