Strain Fitness in Pseudomonas simiae WCS417 around PS417_18675

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18645 and PS417_18650 are separated by 182 nucleotidesPS417_18650 and PS417_18655 are separated by 78 nucleotidesPS417_18655 and PS417_18660 are separated by 0 nucleotidesPS417_18660 and PS417_18665 are separated by 78 nucleotidesPS417_18665 and PS417_18670 are separated by 50 nucleotidesPS417_18670 and PS417_18675 are separated by 78 nucleotidesPS417_18675 and PS417_18680 are separated by 147 nucleotides PS417_18645: PS417_18645 - TetR family transcriptional regulator, at 4,052,492 to 4,053,031 _18645 PS417_18650: PS417_18650 - tRNA-Glu, at 4,053,214 to 4,053,289 _18650 PS417_18655: PS417_18655 - tRNA-Ala, at 4,053,368 to 4,053,443 _18655 PS417_18660: PS417_18660 - tRNA-Glu, at 4,053,444 to 4,053,519 _18660 PS417_18665: PS417_18665 - tRNA-Ala, at 4,053,598 to 4,053,673 _18665 PS417_18670: PS417_18670 - tRNA-Glu, at 4,053,724 to 4,053,799 _18670 PS417_18675: PS417_18675 - tRNA-Ala, at 4,053,878 to 4,053,953 _18675 PS417_18680: PS417_18680 - glutamyl-tRNA synthetase, at 4,054,101 to 4,055,582 _18680 Position (kb) 4053 4054Strain fitness (log2 ratio) -1 0 1at 4053.303 kb on - strandat 4053.303 kb on - strandat 4053.303 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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4,053,303 - +0.8
4,053,303 - -0.1
4,053,303 - +0.8

Or see this region's nucleotide sequence