Strain Fitness in Pseudomonas simiae WCS417 around PS417_17755

Experiment: L-Citrulline (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_17750 and PS417_17755 are separated by 125 nucleotides PS417_17750: PS417_17750 - hypothetical protein, at 3,874,276 to 3,875,718 _17750 PS417_17755: PS417_17755 - hypothetical protein, at 3,875,844 to 3,876,197 _17755 Position (kb) 3875 3876 3877Strain fitness (log2 ratio) -1 0 1at 3874.923 kb on - strand, within PS417_17750at 3875.058 kb on - strand, within PS417_17750at 3875.129 kb on + strand, within PS417_17750at 3875.129 kb on + strand, within PS417_17750at 3875.130 kb on - strand, within PS417_17750at 3875.136 kb on - strand, within PS417_17750at 3875.139 kb on - strand, within PS417_17750at 3875.361 kb on - strand, within PS417_17750at 3875.697 kb on + strandat 3875.733 kb on + strandat 3875.734 kb on - strandat 3875.734 kb on - strandat 3875.782 kb on + strandat 3875.782 kb on + strandat 3875.821 kb on - strandat 3875.900 kb on - strand, within PS417_17755at 3875.928 kb on + strand, within PS417_17755at 3876.024 kb on - strand, within PS417_17755at 3876.178 kb on + strandat 3876.281 kb on + strandat 3876.389 kb on + strandat 3876.390 kb on - strandat 3876.390 kb on - strandat 3876.459 kb on + strandat 3876.552 kb on + strandat 3876.552 kb on + strandat 3876.553 kb on - strandat 3876.553 kb on - strandat 3876.553 kb on - strandat 3876.636 kb on + strandat 3876.875 kb on + strandat 3876.875 kb on + strandat 3876.875 kb on + strandat 3876.875 kb on + strandat 3876.876 kb on - strandat 3877.189 kb on + strandat 3877.192 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
remove
3,874,923 - PS417_17750 0.45 +0.3
3,875,058 - PS417_17750 0.54 +1.1
3,875,129 + PS417_17750 0.59 +1.4
3,875,129 + PS417_17750 0.59 -0.5
3,875,130 - PS417_17750 0.59 +0.2
3,875,136 - PS417_17750 0.60 -0.6
3,875,139 - PS417_17750 0.60 +0.9
3,875,361 - PS417_17750 0.75 -0.2
3,875,697 + -0.2
3,875,733 + +0.0
3,875,734 - -0.1
3,875,734 - -0.1
3,875,782 + -1.7
3,875,782 + -0.5
3,875,821 - -0.2
3,875,900 - PS417_17755 0.16 -1.7
3,875,928 + PS417_17755 0.24 -0.4
3,876,024 - PS417_17755 0.51 -0.6
3,876,178 + +1.1
3,876,281 + -0.4
3,876,389 + +0.6
3,876,390 - +0.4
3,876,390 - -0.2
3,876,459 + -0.5
3,876,552 + +0.6
3,876,552 + -0.1
3,876,553 - +0.1
3,876,553 - +0.5
3,876,553 - -0.4
3,876,636 + +0.1
3,876,875 + -0.9
3,876,875 + +0.3
3,876,875 + -0.5
3,876,875 + -1.5
3,876,876 - -0.4
3,877,189 + +0.1
3,877,192 - +0.2

Or see this region's nucleotide sequence