Strain Fitness in Pseudomonas simiae WCS417 around PS417_17585

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17580 and PS417_17585 are separated by 16 nucleotidesPS417_17585 and PS417_17590 are separated by 244 nucleotides PS417_17580: PS417_17580 - citrulline utilization hydrolase (from data), at 3,838,488 to 3,839,414 _17580 PS417_17585: PS417_17585 - ornithine cyclodeaminase, at 3,839,431 to 3,840,477 _17585 PS417_17590: PS417_17590 - ABC transporter substrate-binding protein, at 3,840,722 to 3,841,498 _17590 Position (kb) 3839 3840 3841Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3838.630 kb on - strand, within PS417_17580at 3838.630 kb on - strand, within PS417_17580at 3838.630 kb on - strand, within PS417_17580at 3838.930 kb on - strand, within PS417_17580at 3839.324 kb on - strandat 3839.464 kb on + strandat 3839.515 kb on + strandat 3839.531 kb on - strandat 3839.638 kb on + strand, within PS417_17585at 3839.639 kb on - strand, within PS417_17585at 3840.312 kb on - strand, within PS417_17585at 3840.346 kb on + strand, within PS417_17585at 3840.346 kb on + strand, within PS417_17585at 3840.701 kb on + strandat 3840.708 kb on + strandat 3840.711 kb on - strandat 3841.057 kb on + strand, within PS417_17590at 3841.223 kb on + strand, within PS417_17590at 3841.223 kb on + strand, within PS417_17590at 3841.445 kb on + strandat 3841.445 kb on + strandat 3841.445 kb on + strandat 3841.445 kb on + strandat 3841.446 kb on - strandat 3841.467 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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3,838,630 - PS417_17580 0.15 -2.1
3,838,630 - PS417_17580 0.15 -2.8
3,838,630 - PS417_17580 0.15 -5.3
3,838,930 - PS417_17580 0.48 -3.4
3,839,324 - -3.5
3,839,464 + +1.1
3,839,515 + -2.8
3,839,531 - -2.6
3,839,638 + PS417_17585 0.20 -3.0
3,839,639 - PS417_17585 0.20 +0.1
3,840,312 - PS417_17585 0.84 -2.7
3,840,346 + PS417_17585 0.87 -2.6
3,840,346 + PS417_17585 0.87 -1.2
3,840,701 + -1.4
3,840,708 + +2.3
3,840,711 - +0.9
3,841,057 + PS417_17590 0.43 +1.5
3,841,223 + PS417_17590 0.64 +1.4
3,841,223 + PS417_17590 0.64 +2.3
3,841,445 + +2.6
3,841,445 + +0.8
3,841,445 + +2.4
3,841,445 + +2.1
3,841,446 - +0.8
3,841,467 - +1.8

Or see this region's nucleotide sequence