Strain Fitness in Pseudomonas simiae WCS417 around PS417_14695

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14690 and PS417_14695 are separated by 804 nucleotidesPS417_14695 and PS417_14700 are separated by 110 nucleotides PS417_14690: PS417_14690 - chemotaxis protein, at 3,207,977 to 3,209,632 _14690 PS417_14695: PS417_14695 - hypothetical protein, at 3,210,437 to 3,210,859 _14695 PS417_14700: PS417_14700 - hypothetical protein, at 3,210,970 to 3,211,446 _14700 Position (kb) 3210 3211Strain fitness (log2 ratio) -2 -1 0 1at 3209.704 kb on - strandat 3209.704 kb on - strandat 3209.704 kb on - strandat 3209.845 kb on + strandat 3209.888 kb on - strandat 3209.919 kb on - strandat 3210.051 kb on - strandat 3210.113 kb on + strandat 3210.150 kb on + strandat 3210.150 kb on + strandat 3210.161 kb on + strandat 3210.224 kb on + strandat 3210.344 kb on + strandat 3210.375 kb on - strandat 3210.375 kb on - strandat 3210.375 kb on - strandat 3210.380 kb on + strandat 3210.381 kb on - strandat 3210.426 kb on + strandat 3210.439 kb on - strandat 3210.531 kb on + strand, within PS417_14695at 3210.531 kb on + strand, within PS417_14695at 3210.532 kb on - strand, within PS417_14695at 3210.532 kb on - strand, within PS417_14695at 3210.654 kb on + strand, within PS417_14695at 3210.655 kb on - strand, within PS417_14695at 3210.779 kb on + strand, within PS417_14695at 3210.779 kb on + strand, within PS417_14695at 3210.780 kb on - strand, within PS417_14695at 3210.852 kb on + strandat 3210.852 kb on + strandat 3210.852 kb on + strandat 3210.853 kb on - strandat 3210.927 kb on + strandat 3210.927 kb on + strandat 3210.928 kb on - strandat 3210.928 kb on - strandat 3210.928 kb on - strandat 3210.961 kb on + strandat 3210.961 kb on + strandat 3211.250 kb on + strand, within PS417_14700at 3211.698 kb on + strandat 3211.698 kb on + strandat 3211.698 kb on + strandat 3211.699 kb on - strandat 3211.776 kb on + strandat 3211.776 kb on + strandat 3211.776 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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3,209,704 - -1.4
3,209,704 - -0.2
3,209,704 - -0.3
3,209,845 + -0.2
3,209,888 - +0.0
3,209,919 - +1.3
3,210,051 - -0.1
3,210,113 + -0.3
3,210,150 + -1.5
3,210,150 + -0.8
3,210,161 + -0.2
3,210,224 + -0.5
3,210,344 + +0.2
3,210,375 - -0.5
3,210,375 - +0.1
3,210,375 - -0.5
3,210,380 + +0.9
3,210,381 - -0.5
3,210,426 + +0.4
3,210,439 - -0.1
3,210,531 + PS417_14695 0.22 -2.2
3,210,531 + PS417_14695 0.22 -0.7
3,210,532 - PS417_14695 0.22 -0.1
3,210,532 - PS417_14695 0.22 -0.2
3,210,654 + PS417_14695 0.51 -0.4
3,210,655 - PS417_14695 0.52 -2.7
3,210,779 + PS417_14695 0.81 -0.2
3,210,779 + PS417_14695 0.81 -0.3
3,210,780 - PS417_14695 0.81 -0.5
3,210,852 + +0.9
3,210,852 + +0.3
3,210,852 + -0.7
3,210,853 - +0.1
3,210,927 + -0.1
3,210,927 + +0.1
3,210,928 - -0.4
3,210,928 - +0.0
3,210,928 - +1.6
3,210,961 + -0.2
3,210,961 + +0.9
3,211,250 + PS417_14700 0.59 +1.2
3,211,698 + +0.2
3,211,698 + +1.1
3,211,698 + +1.5
3,211,699 - +0.3
3,211,776 + -0.4
3,211,776 + +0.4
3,211,776 + +0.5

Or see this region's nucleotide sequence