Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4284 and Echvi_4285 are separated by 13 nucleotides Echvi_4285 and Echvi_4286 overlap by 2720 nucleotides Echvi_4286 and Echvi_4287 overlap by 1 nucleotides Echvi_4287 and Echvi_4288 are separated by 170 nucleotides Echvi_4288 and Echvi_4289 are separated by 389 nucleotides Echvi_4289 and Echvi_4290 are separated by 121 nucleotides
Echvi_4284: Echvi_4284 - Periplasmic protease, at 5,129,056 to 5,130,444
_4284
Echvi_4285: Echvi_4285 - hypothetical protein, at 5,130,458 to 5,133,657
_4285
Echvi_4286: Echvi_4286 - hypothetical protein, at 5,130,938 to 5,131,225
_4286
Echvi_4287: Echvi_4287 - Transposase and inactivated derivatives, at 5,131,225 to 5,131,566
_4287
Echvi_4288: Echvi_4288 - Transposase and inactivated derivatives, at 5,131,737 to 5,133,290
_4288
Echvi_4289: Echvi_4289 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 5,133,680 to 5,134,252
_4289
Echvi_4290: Echvi_4290 - Activator of Hsp90 ATPase homolog 1-like protein., at 5,134,374 to 5,134,778
_4290
Position (kb) 5130
5131
5132
5133
5134 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5129.466 kb on + strand, within Echvi_4284 at 5129.466 kb on + strand, within Echvi_4284 at 5129.473 kb on + strand, within Echvi_4284 at 5129.556 kb on - strand, within Echvi_4284 at 5129.562 kb on + strand, within Echvi_4284 at 5129.562 kb on + strand, within Echvi_4284 at 5129.563 kb on - strand, within Echvi_4284 at 5129.599 kb on - strand, within Echvi_4284 at 5129.606 kb on - strand, within Echvi_4284 at 5129.608 kb on + strand, within Echvi_4284 at 5129.611 kb on + strand, within Echvi_4284 at 5129.656 kb on + strand, within Echvi_4284 at 5129.707 kb on + strand, within Echvi_4284 at 5129.707 kb on + strand, within Echvi_4284 at 5129.708 kb on - strand, within Echvi_4284 at 5129.708 kb on - strand, within Echvi_4284 at 5129.728 kb on + strand, within Echvi_4284 at 5129.733 kb on - strand, within Echvi_4284 at 5129.759 kb on - strand, within Echvi_4284 at 5129.801 kb on + strand, within Echvi_4284 at 5129.803 kb on + strand, within Echvi_4284 at 5129.803 kb on + strand, within Echvi_4284 at 5129.803 kb on + strand, within Echvi_4284 at 5129.804 kb on - strand, within Echvi_4284 at 5129.826 kb on + strand, within Echvi_4284 at 5129.827 kb on - strand, within Echvi_4284 at 5129.881 kb on - strand, within Echvi_4284 at 5129.939 kb on + strand, within Echvi_4284 at 5129.939 kb on + strand, within Echvi_4284 at 5129.951 kb on - strand, within Echvi_4284 at 5130.014 kb on + strand, within Echvi_4284 at 5130.015 kb on - strand, within Echvi_4284 at 5130.015 kb on - strand, within Echvi_4284 at 5130.015 kb on - strand, within Echvi_4284 at 5130.023 kb on - strand at 5130.023 kb on - strand, within Echvi_4284 at 5130.023 kb on - strand, within Echvi_4284 at 5130.037 kb on - strand, within Echvi_4284 at 5130.051 kb on + strand at 5130.052 kb on - strand, within Echvi_4284 at 5130.052 kb on - strand, within Echvi_4284 at 5130.052 kb on - strand, within Echvi_4284 at 5130.060 kb on + strand, within Echvi_4284 at 5130.060 kb on + strand, within Echvi_4284 at 5130.060 kb on + strand, within Echvi_4284 at 5130.061 kb on - strand, within Echvi_4284 at 5130.067 kb on + strand, within Echvi_4284 at 5130.068 kb on - strand, within Echvi_4284 at 5130.111 kb on - strand, within Echvi_4284 at 5130.111 kb on - strand, within Echvi_4284 at 5130.111 kb on - strand, within Echvi_4284 at 5130.112 kb on + strand, within Echvi_4284 at 5130.112 kb on + strand, within Echvi_4284 at 5130.112 kb on + strand, within Echvi_4284 at 5130.113 kb on - strand, within Echvi_4284 at 5130.113 kb on - strand, within Echvi_4284 at 5130.125 kb on - strand, within Echvi_4284 at 5130.149 kb on - strand, within Echvi_4284 at 5130.157 kb on + strand, within Echvi_4284 at 5130.182 kb on - strand, within Echvi_4284 at 5130.182 kb on - strand, within Echvi_4284 at 5130.187 kb on + strand, within Echvi_4284 at 5130.187 kb on + strand, within Echvi_4284 at 5130.222 kb on + strand, within Echvi_4284 at 5130.222 kb on + strand, within Echvi_4284 at 5130.225 kb on + strand, within Echvi_4284 at 5130.226 kb on - strand, within Echvi_4284 at 5130.232 kb on - strand, within Echvi_4284 at 5130.253 kb on + strand, within Echvi_4284 at 5130.292 kb on - strand, within Echvi_4284 at 5130.316 kb on - strand at 5130.323 kb on + strand at 5130.324 kb on - strand at 5130.349 kb on - strand at 5130.367 kb on - strand at 5130.368 kb on + strand at 5130.368 kb on + strand at 5130.368 kb on + strand at 5130.369 kb on - strand at 5130.409 kb on + strand at 5130.449 kb on - strand at 5130.451 kb on - strand at 5130.451 kb on - strand at 5130.456 kb on - strand at 5130.459 kb on + strand at 5130.460 kb on - strand at 5130.531 kb on - strand at 5130.536 kb on + strand at 5130.536 kb on + strand at 5130.536 kb on + strand at 5130.536 kb on + strand at 5130.536 kb on + strand at 5130.573 kb on + strand at 5130.577 kb on + strand at 5130.577 kb on + strand at 5130.578 kb on - strand at 5130.583 kb on + strand at 5130.587 kb on - strand at 5130.594 kb on - strand at 5130.596 kb on - strand at 5130.608 kb on - strand at 5130.623 kb on + strand at 5130.650 kb on - strand at 5130.666 kb on - strand at 5130.728 kb on + strand at 5130.729 kb on - strand at 5130.735 kb on - strand at 5130.779 kb on + strand, within Echvi_4285 at 5130.788 kb on + strand, within Echvi_4285 at 5130.789 kb on - strand, within Echvi_4285 at 5130.824 kb on + strand, within Echvi_4285 at 5130.828 kb on - strand, within Echvi_4285 at 5130.860 kb on + strand, within Echvi_4285 at 5130.861 kb on - strand, within Echvi_4285 at 5130.878 kb on - strand, within Echvi_4285 at 5133.304 kb on + strand, within Echvi_4285 at 5133.304 kb on + strand, within Echvi_4285 at 5133.320 kb on - strand, within Echvi_4285 at 5133.321 kb on + strand, within Echvi_4285 at 5133.394 kb on + strand at 5133.401 kb on + strand at 5133.403 kb on + strand at 5133.409 kb on + strand at 5133.409 kb on + strand at 5133.410 kb on - strand at 5133.410 kb on - strand at 5133.411 kb on + strand at 5133.411 kb on + strand at 5133.417 kb on + strand at 5133.417 kb on + strand at 5133.418 kb on - strand at 5133.426 kb on - strand at 5133.463 kb on + strand at 5133.463 kb on + strand at 5133.464 kb on - strand at 5133.526 kb on + strand at 5133.528 kb on + strand at 5133.529 kb on - strand at 5133.533 kb on - strand at 5133.533 kb on - strand at 5133.541 kb on + strand at 5133.563 kb on - strand at 5133.563 kb on - strand at 5133.566 kb on - strand at 5133.566 kb on - strand at 5133.633 kb on + strand at 5133.645 kb on + strand at 5133.646 kb on - strand at 5133.663 kb on + strand at 5133.663 kb on + strand at 5133.663 kb on + strand at 5133.663 kb on + strand at 5133.681 kb on + strand at 5133.681 kb on + strand at 5133.682 kb on - strand at 5133.686 kb on - strand at 5133.734 kb on + strand at 5133.734 kb on + strand at 5133.734 kb on + strand at 5133.735 kb on - strand at 5133.746 kb on + strand, within Echvi_4289 at 5133.746 kb on + strand, within Echvi_4289 at 5133.746 kb on + strand, within Echvi_4289 at 5133.770 kb on + strand, within Echvi_4289 at 5133.771 kb on - strand, within Echvi_4289 at 5133.773 kb on + strand, within Echvi_4289 at 5133.773 kb on + strand, within Echvi_4289 at 5133.791 kb on - strand, within Echvi_4289 at 5133.791 kb on - strand, within Echvi_4289 at 5133.860 kb on + strand, within Echvi_4289 at 5133.866 kb on + strand, within Echvi_4289 at 5133.866 kb on + strand, within Echvi_4289 at 5133.866 kb on + strand, within Echvi_4289 at 5133.866 kb on + strand, within Echvi_4289 at 5133.867 kb on - strand, within Echvi_4289 at 5133.867 kb on - strand, within Echvi_4289 at 5133.875 kb on + strand, within Echvi_4289 at 5133.875 kb on + strand, within Echvi_4289 at 5133.876 kb on - strand, within Echvi_4289 at 5133.930 kb on - strand, within Echvi_4289 at 5133.949 kb on + strand, within Echvi_4289 at 5133.949 kb on + strand, within Echvi_4289 at 5133.967 kb on + strand, within Echvi_4289 at 5133.968 kb on - strand, within Echvi_4289 at 5133.968 kb on - strand, within Echvi_4289 at 5133.975 kb on - strand, within Echvi_4289 at 5133.975 kb on - strand, within Echvi_4289 at 5133.982 kb on - strand, within Echvi_4289 at 5134.020 kb on - strand, within Echvi_4289 at 5134.020 kb on - strand, within Echvi_4289 at 5134.085 kb on - strand, within Echvi_4289 at 5134.087 kb on + strand, within Echvi_4289 at 5134.088 kb on - strand, within Echvi_4289 at 5134.107 kb on + strand, within Echvi_4289 at 5134.108 kb on - strand, within Echvi_4289 at 5134.127 kb on - strand, within Echvi_4289 at 5134.135 kb on + strand, within Echvi_4289 at 5134.142 kb on + strand, within Echvi_4289 at 5134.142 kb on + strand, within Echvi_4289 at 5134.142 kb on + strand, within Echvi_4289 at 5134.142 kb on + strand, within Echvi_4289 at 5134.143 kb on - strand, within Echvi_4289 at 5134.143 kb on - strand, within Echvi_4289 at 5134.143 kb on - strand, within Echvi_4289 at 5134.143 kb on - strand, within Echvi_4289 at 5134.144 kb on + strand, within Echvi_4289 at 5134.144 kb on + strand, within Echvi_4289 at 5134.145 kb on - strand, within Echvi_4289 at 5134.145 kb on - strand, within Echvi_4289 at 5134.145 kb on - strand, within Echvi_4289 at 5134.145 kb on - strand, within Echvi_4289 at 5134.145 kb on - strand, within Echvi_4289 at 5134.145 kb on - strand, within Echvi_4289 at 5134.184 kb on + strand, within Echvi_4289 at 5134.231 kb on - strand at 5134.238 kb on + strand at 5134.289 kb on + strand at 5134.299 kb on - strand at 5134.310 kb on - strand at 5134.311 kb on + strand at 5134.312 kb on - strand at 5134.312 kb on - strand at 5134.315 kb on + strand at 5134.331 kb on + strand at 5134.331 kb on + strand at 5134.331 kb on + strand at 5134.331 kb on + strand at 5134.352 kb on + strand at 5134.352 kb on + strand at 5134.352 kb on + strand at 5134.404 kb on + strand at 5134.417 kb on + strand, within Echvi_4290 at 5134.418 kb on - strand, within Echvi_4290 at 5134.418 kb on - strand, within Echvi_4290 at 5134.418 kb on - strand, within Echvi_4290 at 5134.422 kb on - strand, within Echvi_4290 at 5134.474 kb on - strand, within Echvi_4290 at 5134.499 kb on + strand, within Echvi_4290 at 5134.615 kb on + strand, within Echvi_4290 at 5134.653 kb on + strand, within Echvi_4290
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 5,129,466 + Echvi_4284 0.30 +1.2 5,129,466 + Echvi_4284 0.30 +1.0 5,129,473 + Echvi_4284 0.30 -0.6 5,129,556 - Echvi_4284 0.36 +0.7 5,129,562 + Echvi_4284 0.36 +0.1 5,129,562 + Echvi_4284 0.36 +0.7 5,129,563 - Echvi_4284 0.37 +0.3 5,129,599 - Echvi_4284 0.39 -1.4 5,129,606 - Echvi_4284 0.40 +0.1 5,129,608 + Echvi_4284 0.40 +1.3 5,129,611 + Echvi_4284 0.40 +0.0 5,129,656 + Echvi_4284 0.43 +0.2 5,129,707 + Echvi_4284 0.47 -1.6 5,129,707 + Echvi_4284 0.47 -0.6 5,129,708 - Echvi_4284 0.47 +0.2 5,129,708 - Echvi_4284 0.47 -0.4 5,129,728 + Echvi_4284 0.48 -0.3 5,129,733 - Echvi_4284 0.49 +1.2 5,129,759 - Echvi_4284 0.51 -0.3 5,129,801 + Echvi_4284 0.54 -0.1 5,129,803 + Echvi_4284 0.54 -0.5 5,129,803 + Echvi_4284 0.54 +0.9 5,129,803 + Echvi_4284 0.54 +0.7 5,129,804 - Echvi_4284 0.54 -1.3 5,129,826 + Echvi_4284 0.55 +0.4 5,129,827 - Echvi_4284 0.56 -0.1 5,129,881 - Echvi_4284 0.59 +0.6 5,129,939 + Echvi_4284 0.64 -0.6 5,129,939 + Echvi_4284 0.64 +0.5 5,129,951 - Echvi_4284 0.64 -0.9 5,130,014 + Echvi_4284 0.69 -0.4 5,130,015 - Echvi_4284 0.69 +0.3 5,130,015 - Echvi_4284 0.69 +0.4 5,130,015 - Echvi_4284 0.69 +0.8 5,130,023 - +0.1 5,130,023 - Echvi_4284 0.70 -0.3 5,130,023 - Echvi_4284 0.70 +0.1 5,130,037 - Echvi_4284 0.71 +0.7 5,130,051 + +0.7 5,130,052 - Echvi_4284 0.72 -0.0 5,130,052 - Echvi_4284 0.72 +0.1 5,130,052 - Echvi_4284 0.72 +2.3 5,130,060 + Echvi_4284 0.72 -1.4 5,130,060 + Echvi_4284 0.72 +1.1 5,130,060 + Echvi_4284 0.72 -0.0 5,130,061 - Echvi_4284 0.72 +0.0 5,130,067 + Echvi_4284 0.73 +3.0 5,130,068 - Echvi_4284 0.73 -0.5 5,130,111 - Echvi_4284 0.76 -0.7 5,130,111 - Echvi_4284 0.76 +0.3 5,130,111 - Echvi_4284 0.76 -0.1 5,130,112 + Echvi_4284 0.76 -0.6 5,130,112 + Echvi_4284 0.76 -0.5 5,130,112 + Echvi_4284 0.76 -0.6 5,130,113 - Echvi_4284 0.76 -0.9 5,130,113 - Echvi_4284 0.76 +0.0 5,130,125 - Echvi_4284 0.77 -0.2 5,130,149 - Echvi_4284 0.79 +0.1 5,130,157 + Echvi_4284 0.79 -1.1 5,130,182 - Echvi_4284 0.81 -0.8 5,130,182 - Echvi_4284 0.81 +2.7 5,130,187 + Echvi_4284 0.81 +0.5 5,130,187 + Echvi_4284 0.81 +0.1 5,130,222 + Echvi_4284 0.84 +0.1 5,130,222 + Echvi_4284 0.84 -1.6 5,130,225 + Echvi_4284 0.84 -0.7 5,130,226 - Echvi_4284 0.84 +1.0 5,130,232 - Echvi_4284 0.85 -0.3 5,130,253 + Echvi_4284 0.86 -0.4 5,130,292 - Echvi_4284 0.89 +1.4 5,130,316 - -0.8 5,130,323 + +0.1 5,130,324 - +0.6 5,130,349 - -1.0 5,130,367 - -0.9 5,130,368 + -0.9 5,130,368 + -2.1 5,130,368 + -1.1 5,130,369 - -0.1 5,130,409 + -0.4 5,130,449 - -1.9 5,130,451 - -2.5 5,130,451 - -0.2 5,130,456 - -1.2 5,130,459 + -0.6 5,130,460 - +0.0 5,130,531 - +0.4 5,130,536 + -1.3 5,130,536 + -0.6 5,130,536 + -0.5 5,130,536 + -0.2 5,130,536 + -0.3 5,130,573 + +0.3 5,130,577 + -1.0 5,130,577 + -0.5 5,130,578 - +0.5 5,130,583 + -1.2 5,130,587 - -0.7 5,130,594 - -0.7 5,130,596 - -0.3 5,130,608 - -0.2 5,130,623 + -0.6 5,130,650 - -0.3 5,130,666 - +0.1 5,130,728 + +1.4 5,130,729 - -0.0 5,130,735 - -0.4 5,130,779 + Echvi_4285 0.10 -0.3 5,130,788 + Echvi_4285 0.10 +0.9 5,130,789 - Echvi_4285 0.10 -0.3 5,130,824 + Echvi_4285 0.11 -1.1 5,130,828 - Echvi_4285 0.12 -0.5 5,130,860 + Echvi_4285 0.13 +0.7 5,130,861 - Echvi_4285 0.13 -1.0 5,130,878 - Echvi_4285 0.13 -1.3 5,133,304 + Echvi_4285 0.89 +0.1 5,133,304 + Echvi_4285 0.89 -2.0 5,133,320 - Echvi_4285 0.89 -1.9 5,133,321 + Echvi_4285 0.89 -0.4 5,133,394 + -0.4 5,133,401 + +0.4 5,133,403 + +0.6 5,133,409 + +0.6 5,133,409 + +0.4 5,133,410 - -0.1 5,133,410 - -2.2 5,133,411 + +0.1 5,133,411 + -0.3 5,133,417 + +0.5 5,133,417 + +0.9 5,133,418 - +0.7 5,133,426 - -0.1 5,133,463 + -0.2 5,133,463 + +0.3 5,133,464 - -2.4 5,133,526 + -0.5 5,133,528 + +0.0 5,133,529 - -0.3 5,133,533 - -0.6 5,133,533 - -0.1 5,133,541 + -0.1 5,133,563 - +1.7 5,133,563 - +1.2 5,133,566 - -0.7 5,133,566 - -1.5 5,133,633 + -0.8 5,133,645 + -1.6 5,133,646 - -0.3 5,133,663 + +0.4 5,133,663 + -1.1 5,133,663 + +0.4 5,133,663 + -0.9 5,133,681 + +0.3 5,133,681 + -0.1 5,133,682 - +1.0 5,133,686 - -0.3 5,133,734 + -0.1 5,133,734 + -0.2 5,133,734 + -0.3 5,133,735 - -0.1 5,133,746 + Echvi_4289 0.12 +1.7 5,133,746 + Echvi_4289 0.12 +0.7 5,133,746 + Echvi_4289 0.12 -0.4 5,133,770 + Echvi_4289 0.16 +1.0 5,133,771 - Echvi_4289 0.16 -0.7 5,133,773 + Echvi_4289 0.16 -0.6 5,133,773 + Echvi_4289 0.16 +0.0 5,133,791 - Echvi_4289 0.19 +0.4 5,133,791 - Echvi_4289 0.19 -0.7 5,133,860 + Echvi_4289 0.31 +0.2 5,133,866 + Echvi_4289 0.32 +1.1 5,133,866 + Echvi_4289 0.32 -0.6 5,133,866 + Echvi_4289 0.32 -0.7 5,133,866 + Echvi_4289 0.32 -0.9 5,133,867 - Echvi_4289 0.33 -1.1 5,133,867 - Echvi_4289 0.33 -0.3 5,133,875 + Echvi_4289 0.34 -0.7 5,133,875 + Echvi_4289 0.34 +0.6 5,133,876 - Echvi_4289 0.34 +0.8 5,133,930 - Echvi_4289 0.44 +0.0 5,133,949 + Echvi_4289 0.47 +0.1 5,133,949 + Echvi_4289 0.47 +0.7 5,133,967 + Echvi_4289 0.50 -0.7 5,133,968 - Echvi_4289 0.50 +0.1 5,133,968 - Echvi_4289 0.50 -1.2 5,133,975 - Echvi_4289 0.51 -0.2 5,133,975 - Echvi_4289 0.51 -0.2 5,133,982 - Echvi_4289 0.53 +0.5 5,134,020 - Echvi_4289 0.59 -0.5 5,134,020 - Echvi_4289 0.59 -0.5 5,134,085 - Echvi_4289 0.71 +0.4 5,134,087 + Echvi_4289 0.71 +0.0 5,134,088 - Echvi_4289 0.71 +0.1 5,134,107 + Echvi_4289 0.75 -0.5 5,134,108 - Echvi_4289 0.75 +0.6 5,134,127 - Echvi_4289 0.78 -1.1 5,134,135 + Echvi_4289 0.79 -0.1 5,134,142 + Echvi_4289 0.81 +1.0 5,134,142 + Echvi_4289 0.81 -0.3 5,134,142 + Echvi_4289 0.81 -0.1 5,134,142 + Echvi_4289 0.81 -0.7 5,134,143 - Echvi_4289 0.81 +1.3 5,134,143 - Echvi_4289 0.81 +1.1 5,134,143 - Echvi_4289 0.81 -0.0 5,134,143 - Echvi_4289 0.81 -0.1 5,134,144 + Echvi_4289 0.81 +0.6 5,134,144 + Echvi_4289 0.81 +0.6 5,134,145 - Echvi_4289 0.81 +0.4 5,134,145 - Echvi_4289 0.81 +0.4 5,134,145 - Echvi_4289 0.81 -0.1 5,134,145 - Echvi_4289 0.81 -0.2 5,134,145 - Echvi_4289 0.81 +0.8 5,134,145 - Echvi_4289 0.81 +0.8 5,134,184 + Echvi_4289 0.88 +0.2 5,134,231 - -1.7 5,134,238 + -0.1 5,134,289 + -0.4 5,134,299 - -1.2 5,134,310 - -0.7 5,134,311 + +0.4 5,134,312 - +0.0 5,134,312 - +0.3 5,134,315 + +0.9 5,134,331 + -1.9 5,134,331 + -0.0 5,134,331 + +0.7 5,134,331 + -0.8 5,134,352 + -0.6 5,134,352 + -1.0 5,134,352 + -1.8 5,134,404 + -1.3 5,134,417 + Echvi_4290 0.11 +0.0 5,134,418 - Echvi_4290 0.11 -0.4 5,134,418 - Echvi_4290 0.11 -0.6 5,134,418 - Echvi_4290 0.11 +2.0 5,134,422 - Echvi_4290 0.12 +0.9 5,134,474 - Echvi_4290 0.25 +0.5 5,134,499 + Echvi_4290 0.31 -0.6 5,134,615 + Echvi_4290 0.60 -1.0 5,134,653 + Echvi_4290 0.69 +0.0
Or see this region's nucleotide sequence