Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3131 and Echvi_3132 are separated by 175 nucleotides Echvi_3132 and Echvi_3133 are separated by 160 nucleotides
Echvi_3131: Echvi_3131 - Arginase/agmatinase/formimionoglutamate hydrolase, arginase family, at 3,743,477 to 3,744,547
_3131
Echvi_3132: Echvi_3132 - Phosphohistidine phosphatase SixA, at 3,744,723 to 3,745,202
_3132
Echvi_3133: Echvi_3133 - DNA topoisomerase I, bacterial, at 3,745,363 to 3,747,684
_3133
Position (kb)
3744
3745
3746 Strain fitness (log2 ratio)
-2
-1
0
1 at 3743.735 kb on - strand, within Echvi_3131 at 3743.735 kb on - strand, within Echvi_3131 at 3743.765 kb on + strand, within Echvi_3131 at 3743.802 kb on + strand, within Echvi_3131 at 3743.802 kb on + strand, within Echvi_3131 at 3743.819 kb on - strand, within Echvi_3131 at 3743.845 kb on + strand, within Echvi_3131 at 3744.005 kb on + strand, within Echvi_3131 at 3744.015 kb on - strand, within Echvi_3131 at 3744.052 kb on + strand, within Echvi_3131 at 3744.070 kb on + strand, within Echvi_3131 at 3744.071 kb on - strand, within Echvi_3131 at 3744.071 kb on - strand, within Echvi_3131 at 3744.132 kb on + strand, within Echvi_3131 at 3744.237 kb on + strand, within Echvi_3131 at 3744.271 kb on + strand, within Echvi_3131 at 3744.276 kb on + strand, within Echvi_3131 at 3744.277 kb on - strand, within Echvi_3131 at 3744.301 kb on + strand, within Echvi_3131 at 3744.564 kb on + strand at 3744.615 kb on - strand at 3744.616 kb on + strand at 3744.617 kb on - strand at 3744.663 kb on - strand at 3744.732 kb on + strand at 3744.732 kb on + strand at 3744.758 kb on + strand at 3744.827 kb on + strand, within Echvi_3132 at 3744.827 kb on + strand, within Echvi_3132 at 3744.828 kb on - strand, within Echvi_3132 at 3744.847 kb on + strand, within Echvi_3132 at 3744.848 kb on - strand, within Echvi_3132 at 3744.888 kb on + strand, within Echvi_3132 at 3744.888 kb on + strand, within Echvi_3132 at 3744.889 kb on - strand, within Echvi_3132 at 3744.889 kb on - strand, within Echvi_3132 at 3744.896 kb on + strand, within Echvi_3132 at 3744.896 kb on + strand, within Echvi_3132 at 3744.897 kb on - strand, within Echvi_3132 at 3744.897 kb on - strand, within Echvi_3132 at 3744.897 kb on - strand, within Echvi_3132 at 3745.063 kb on - strand, within Echvi_3132 at 3745.189 kb on - strand at 3745.192 kb on - strand at 3745.192 kb on - strand at 3745.215 kb on - strand at 3745.248 kb on + strand at 3745.297 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 3,743,735 - Echvi_3131 0.24 +0.6 3,743,735 - Echvi_3131 0.24 -2.1 3,743,765 + Echvi_3131 0.27 -2.1 3,743,802 + Echvi_3131 0.30 -0.9 3,743,802 + Echvi_3131 0.30 -0.2 3,743,819 - Echvi_3131 0.32 -1.2 3,743,845 + Echvi_3131 0.34 +1.3 3,744,005 + Echvi_3131 0.49 +0.5 3,744,015 - Echvi_3131 0.50 -0.0 3,744,052 + Echvi_3131 0.54 -0.5 3,744,070 + Echvi_3131 0.55 +0.3 3,744,071 - Echvi_3131 0.55 +0.2 3,744,071 - Echvi_3131 0.55 -1.1 3,744,132 + Echvi_3131 0.61 -0.4 3,744,237 + Echvi_3131 0.71 +0.2 3,744,271 + Echvi_3131 0.74 +0.7 3,744,276 + Echvi_3131 0.75 +0.2 3,744,277 - Echvi_3131 0.75 -0.0 3,744,301 + Echvi_3131 0.77 +0.3 3,744,564 + +0.4 3,744,615 - +0.5 3,744,616 + +1.1 3,744,617 - +1.6 3,744,663 - -0.4 3,744,732 + -0.3 3,744,732 + +0.6 3,744,758 + +0.3 3,744,827 + Echvi_3132 0.22 -1.0 3,744,827 + Echvi_3132 0.22 +0.6 3,744,828 - Echvi_3132 0.22 -0.2 3,744,847 + Echvi_3132 0.26 -2.0 3,744,848 - Echvi_3132 0.26 -1.2 3,744,888 + Echvi_3132 0.34 -0.3 3,744,888 + Echvi_3132 0.34 -0.6 3,744,889 - Echvi_3132 0.35 -0.3 3,744,889 - Echvi_3132 0.35 -1.2 3,744,896 + Echvi_3132 0.36 -0.3 3,744,896 + Echvi_3132 0.36 -1.2 3,744,897 - Echvi_3132 0.36 +0.6 3,744,897 - Echvi_3132 0.36 +0.6 3,744,897 - Echvi_3132 0.36 -1.2 3,745,063 - Echvi_3132 0.71 -1.0 3,745,189 - -0.0 3,745,192 - +0.8 3,745,192 - -0.1 3,745,215 - -0.9 3,745,248 + -0.6 3,745,297 + -0.1
Or see this region's nucleotide sequence