Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3132

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3131 and Echvi_3132 are separated by 175 nucleotidesEchvi_3132 and Echvi_3133 are separated by 160 nucleotides Echvi_3131: Echvi_3131 - Arginase/agmatinase/formimionoglutamate hydrolase, arginase family, at 3,743,477 to 3,744,547 _3131 Echvi_3132: Echvi_3132 - Phosphohistidine phosphatase SixA, at 3,744,723 to 3,745,202 _3132 Echvi_3133: Echvi_3133 - DNA topoisomerase I, bacterial, at 3,745,363 to 3,747,684 _3133 Position (kb) 3744 3745 3746Strain fitness (log2 ratio) -2 -1 0 1at 3743.735 kb on - strand, within Echvi_3131at 3743.735 kb on - strand, within Echvi_3131at 3743.765 kb on + strand, within Echvi_3131at 3743.802 kb on + strand, within Echvi_3131at 3743.802 kb on + strand, within Echvi_3131at 3743.819 kb on - strand, within Echvi_3131at 3743.845 kb on + strand, within Echvi_3131at 3744.005 kb on + strand, within Echvi_3131at 3744.015 kb on - strand, within Echvi_3131at 3744.052 kb on + strand, within Echvi_3131at 3744.070 kb on + strand, within Echvi_3131at 3744.071 kb on - strand, within Echvi_3131at 3744.071 kb on - strand, within Echvi_3131at 3744.132 kb on + strand, within Echvi_3131at 3744.237 kb on + strand, within Echvi_3131at 3744.271 kb on + strand, within Echvi_3131at 3744.276 kb on + strand, within Echvi_3131at 3744.277 kb on - strand, within Echvi_3131at 3744.301 kb on + strand, within Echvi_3131at 3744.564 kb on + strandat 3744.615 kb on - strandat 3744.616 kb on + strandat 3744.617 kb on - strandat 3744.663 kb on - strandat 3744.732 kb on + strandat 3744.732 kb on + strandat 3744.758 kb on + strandat 3744.827 kb on + strand, within Echvi_3132at 3744.827 kb on + strand, within Echvi_3132at 3744.828 kb on - strand, within Echvi_3132at 3744.847 kb on + strand, within Echvi_3132at 3744.848 kb on - strand, within Echvi_3132at 3744.888 kb on + strand, within Echvi_3132at 3744.888 kb on + strand, within Echvi_3132at 3744.889 kb on - strand, within Echvi_3132at 3744.889 kb on - strand, within Echvi_3132at 3744.896 kb on + strand, within Echvi_3132at 3744.896 kb on + strand, within Echvi_3132at 3744.897 kb on - strand, within Echvi_3132at 3744.897 kb on - strand, within Echvi_3132at 3744.897 kb on - strand, within Echvi_3132at 3745.063 kb on - strand, within Echvi_3132at 3745.189 kb on - strandat 3745.192 kb on - strandat 3745.192 kb on - strandat 3745.215 kb on - strandat 3745.248 kb on + strandat 3745.297 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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3,743,735 - Echvi_3131 0.24 +0.6
3,743,735 - Echvi_3131 0.24 -2.1
3,743,765 + Echvi_3131 0.27 -2.1
3,743,802 + Echvi_3131 0.30 -0.9
3,743,802 + Echvi_3131 0.30 -0.2
3,743,819 - Echvi_3131 0.32 -1.2
3,743,845 + Echvi_3131 0.34 +1.3
3,744,005 + Echvi_3131 0.49 +0.5
3,744,015 - Echvi_3131 0.50 -0.0
3,744,052 + Echvi_3131 0.54 -0.5
3,744,070 + Echvi_3131 0.55 +0.3
3,744,071 - Echvi_3131 0.55 +0.2
3,744,071 - Echvi_3131 0.55 -1.1
3,744,132 + Echvi_3131 0.61 -0.4
3,744,237 + Echvi_3131 0.71 +0.2
3,744,271 + Echvi_3131 0.74 +0.7
3,744,276 + Echvi_3131 0.75 +0.2
3,744,277 - Echvi_3131 0.75 -0.0
3,744,301 + Echvi_3131 0.77 +0.3
3,744,564 + +0.4
3,744,615 - +0.5
3,744,616 + +1.1
3,744,617 - +1.6
3,744,663 - -0.4
3,744,732 + -0.3
3,744,732 + +0.6
3,744,758 + +0.3
3,744,827 + Echvi_3132 0.22 -1.0
3,744,827 + Echvi_3132 0.22 +0.6
3,744,828 - Echvi_3132 0.22 -0.2
3,744,847 + Echvi_3132 0.26 -2.0
3,744,848 - Echvi_3132 0.26 -1.2
3,744,888 + Echvi_3132 0.34 -0.3
3,744,888 + Echvi_3132 0.34 -0.6
3,744,889 - Echvi_3132 0.35 -0.3
3,744,889 - Echvi_3132 0.35 -1.2
3,744,896 + Echvi_3132 0.36 -0.3
3,744,896 + Echvi_3132 0.36 -1.2
3,744,897 - Echvi_3132 0.36 +0.6
3,744,897 - Echvi_3132 0.36 +0.6
3,744,897 - Echvi_3132 0.36 -1.2
3,745,063 - Echvi_3132 0.71 -1.0
3,745,189 - -0.0
3,745,192 - +0.8
3,745,192 - -0.1
3,745,215 - -0.9
3,745,248 + -0.6
3,745,297 + -0.1

Or see this region's nucleotide sequence