Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2711

Experiment: D-Trehalose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose (C)
3,223,040	-		Echvi_2708	0.87	+0.0
3,223,040	-		Echvi_2708	0.87	+0.0
3,223,043	+		Echvi_2708	0.87	-0.0
3,223,078	-				-0.2
3,223,090	-				+0.6
3,223,090	-				-0.4
3,223,134	+				+0.1
3,223,166	+				-2.6
3,223,216	-				-0.5
3,223,221	+		Echvi_2709	0.10	+1.0
3,223,405	-		Echvi_2709	0.58	+0.5
3,223,445	-		Echvi_2709	0.69	-0.4
3,223,470	+		Echvi_2709	0.75	+0.3
3,223,470	+		Echvi_2709	0.75	-0.8
3,223,471	-		Echvi_2709	0.76	-0.1
3,223,519	+		Echvi_2709	0.88	+1.1
3,223,563	-				-0.4
3,223,563	-				+0.2
3,223,584	-				-0.7
3,223,586	-				+1.2
3,223,599	+				-0.4
3,223,599	+				+0.3
3,223,599	+				+0.2
3,223,599	+				+0.5
3,223,600	-				-0.6
3,223,603	+				+0.6
3,223,603	+				+0.4
3,223,604	-				+2.4
3,223,604	-				-0.3
3,223,637	+		Echvi_2710	0.16	+0.1
3,223,637	+		Echvi_2710	0.16	+0.4
3,223,637	+		Echvi_2710	0.16	+1.2
3,223,638	-		Echvi_2710	0.16	+1.1
3,223,730	-		Echvi_2710	0.39	-0.5
3,223,731	+		Echvi_2710	0.39	-0.2
3,223,731	+				+2.2
3,223,732	-		Echvi_2710	0.40	-0.3
3,223,732	-		Echvi_2710	0.40	-0.9
3,223,732	-		Echvi_2710	0.40	-1.3
3,223,733	+		Echvi_2710	0.40	-0.2
3,223,734	-		Echvi_2710	0.40	-1.4
3,223,734	-		Echvi_2710	0.40	+0.1
3,223,737	-		Echvi_2710	0.41	-0.4
3,223,737	-		Echvi_2710	0.41	-0.2
3,223,754	-		Echvi_2710	0.45	+1.6
3,223,838	+		Echvi_2710	0.66	-0.5
3,223,839	-		Echvi_2710	0.67	-1.5
3,223,839	-		Echvi_2710	0.67	-0.1
3,223,872	-		Echvi_2710	0.75	+0.2
3,223,872	-		Echvi_2710	0.75	+1.0
3,223,922	+		Echvi_2710	0.88	-0.7
3,223,944	-				-0.0
3,223,949	-				-0.5
3,223,984	-				+0.2
3,224,003	+				+0.5
3,224,003	+				+0.9
3,224,003	+				+1.6
3,224,022	+				+0.2
3,224,065	+		Echvi_2711	0.14	-0.6
3,224,106	+		Echvi_2711	0.24	+1.3
3,224,106	+		Echvi_2711	0.24	+0.9
3,224,112	+		Echvi_2711	0.26	-0.2
3,224,125	+		Echvi_2711	0.29	-0.1
3,224,155	+		Echvi_2711	0.37	-0.0
3,224,156	-		Echvi_2711	0.37	-0.2
3,224,191	+		Echvi_2711	0.46	+0.7
3,224,192	-		Echvi_2711	0.46	+0.2
3,224,198	-		Echvi_2711	0.47	+0.7
3,224,210	-		Echvi_2711	0.50	+0.0
3,224,241	+		Echvi_2711	0.58	-1.2
3,224,245	+		Echvi_2711	0.59	+1.0
3,224,245	+		Echvi_2711	0.59	-0.2
3,224,246	-		Echvi_2711	0.59	-0.8
3,224,279	-		Echvi_2711	0.68	-0.8
3,224,288	+		Echvi_2711	0.70	+1.0
3,224,288	+		Echvi_2711	0.70	+0.9
3,224,288	+		Echvi_2711	0.70	+0.2
3,224,288	+		Echvi_2711	0.70	+0.6
3,224,288	+		Echvi_2711	0.70	-0.1
3,224,289	-		Echvi_2711	0.70	-0.1
3,224,289	-		Echvi_2711	0.70	+0.4
3,224,290	+		Echvi_2711	0.70	+0.2
3,224,328	+		Echvi_2711	0.80	-1.2
3,224,328	+		Echvi_2711	0.80	+1.3
3,224,329	-		Echvi_2711	0.80	+0.8
3,224,329	-		Echvi_2711	0.80	+0.3
3,224,329	-		Echvi_2711	0.80	+0.8
3,224,332	+		Echvi_2711	0.81	-0.3
3,224,332	+		Echvi_2711	0.81	-0.6
3,224,332	+		Echvi_2711	0.81	+1.2
3,224,332	+		Echvi_2711	0.81	-1.0
3,224,333	-		Echvi_2711	0.81	+1.8
3,224,333	-		Echvi_2711	0.81	+0.3
3,224,406	-				-0.4
3,224,428	+				-0.8
3,224,485	+				-1.1
3,224,486	-				+1.6
3,224,513	+				-1.2
3,224,554	-				+0.5
3,224,605	+				-1.1
3,224,686	+				+1.6
3,224,686	+				-1.0
3,224,698	+				-0.2
3,224,699	-				+0.6
3,224,701	+				-0.1
3,224,701	+				-2.5
3,224,702	-				+1.0
3,224,702	-				-2.5
3,224,713	+				-0.7
3,224,713	+				-0.1
3,224,714	-				+1.7
3,224,714	-				-2.1
3,224,725	+				+1.5
3,224,725	+				-1.0
3,224,726	-				+1.6
3,224,726	-				+0.4
3,224,728	+				-0.4
3,224,728	+				-1.5
3,224,729	-				+2.6
3,224,729	-				+0.4
3,224,729	-				+0.3
3,224,732	+				+2.6
3,224,733	-				-0.1
3,224,733	-				+0.7
3,224,733	-				-0.2
3,224,733	-				+0.8
3,224,776	+		Echvi_2712	0.21	+0.3
3,224,828	-		Echvi_2712	0.36	-0.8
3,224,840	+		Echvi_2712	0.40	+1.6
3,224,882	+		Echvi_2712	0.52	+0.9
3,224,882	+		Echvi_2712	0.52	+0.9
3,224,883	-		Echvi_2712	0.53	-0.2
3,224,883	-		Echvi_2712	0.53	+0.0
3,224,883	-		Echvi_2712	0.53	+0.4
3,224,883	-		Echvi_2712	0.53	-1.5
3,224,884	+		Echvi_2712	0.53	+0.0
3,224,884	+		Echvi_2712	0.53	+0.7
3,224,884	+		Echvi_2712	0.53	-1.1
3,224,885	-		Echvi_2712	0.53	+0.6
3,224,885	-		Echvi_2712	0.53	-0.2
3,224,885	-		Echvi_2712	0.53	-0.2
3,224,885	-		Echvi_2712	0.53	+0.6
3,224,886	+		Echvi_2712	0.54	-0.3
3,224,886	+		Echvi_2712	0.54	-0.5
3,224,886	+		Echvi_2712	0.54	+0.5
3,224,886	+		Echvi_2712	0.54	+1.0
3,224,886	+		Echvi_2712	0.54	-0.0
3,224,886	+		Echvi_2712	0.54	-0.1
3,224,887	-		Echvi_2712	0.54	-0.4
3,224,887	-		Echvi_2712	0.54	+0.9
3,224,887	-		Echvi_2712	0.54	+1.6
3,224,887	-		Echvi_2712	0.54	+0.4
3,224,887	-		Echvi_2712	0.54	-0.8
3,224,911	-		Echvi_2712	0.61	-1.0
3,224,911	-		Echvi_2712	0.61	-0.2
3,224,930	+		Echvi_2712	0.67	-0.7
3,224,931	-		Echvi_2712	0.67	-0.0
3,224,959	+		Echvi_2712	0.75	-0.0
3,224,959	+		Echvi_2712	0.75	+1.6
3,224,960	-		Echvi_2712	0.76	-0.8
3,224,960	-		Echvi_2712	0.76	-0.4
3,224,960	-		Echvi_2712	0.76	+0.7
3,224,971	+		Echvi_2712	0.79	+0.4
3,224,971	+		Echvi_2712	0.79	+0.6
3,225,023	+				-0.7
3,225,035	+				+0.5
3,225,036	-				-0.1
3,225,039	+				+1.3
3,225,039	+				-1.0
3,225,039	+				+0.0
3,225,068	+				-2.8
3,225,090	+				-0.0
3,225,091	-				+0.0
3,225,258	-		Echvi_2713	0.55	-1.4
3,225,302	+		Echvi_2713	0.72	+1.8
3,225,302	+		Echvi_2713	0.72	+0.8
3,225,303	-		Echvi_2713	0.73	-1.4
3,225,323	-		Echvi_2713	0.81	+1.3
3,225,330	-		Echvi_2713	0.83	-0.6
3,225,338	+		Echvi_2713	0.87	-0.7
3,225,339	-		Echvi_2713	0.87	-0.6
3,225,339	-		Echvi_2713	0.87	-0.1
3,225,399	+				-1.0
3,225,400	-				+0.4
3,225,401	+				-0.7