Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0507 and Echvi_0508 are separated by 305 nucleotides Echvi_0508 and Echvi_0509 are separated by 109 nucleotides
Echvi_0507: Echvi_0507 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 566,351 to 567,364
_0507
Echvi_0508: Echvi_0508 - L-fucose:H+ symporter permease, at 567,670 to 568,965
_0508
Echvi_0509: Echvi_0509 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 569,075 to 570,109
_0509
Position (kb) 567
568
569 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 566.746 kb on + strand, within Echvi_0507 at 566.747 kb on - strand, within Echvi_0507 at 566.747 kb on - strand, within Echvi_0507 at 566.780 kb on + strand, within Echvi_0507 at 566.780 kb on + strand, within Echvi_0507 at 567.044 kb on + strand, within Echvi_0507 at 567.055 kb on + strand, within Echvi_0507 at 567.055 kb on + strand, within Echvi_0507 at 567.161 kb on + strand, within Echvi_0507 at 567.195 kb on - strand, within Echvi_0507 at 567.278 kb on + strand at 567.281 kb on - strand at 567.322 kb on + strand at 567.322 kb on + strand at 567.323 kb on - strand at 567.323 kb on - strand at 567.353 kb on + strand at 567.354 kb on - strand at 567.383 kb on - strand at 567.383 kb on - strand at 567.387 kb on - strand at 567.403 kb on + strand at 567.502 kb on + strand at 567.503 kb on - strand at 567.510 kb on + strand at 567.539 kb on + strand at 567.558 kb on + strand at 567.611 kb on + strand at 567.612 kb on - strand at 567.612 kb on - strand at 567.667 kb on - strand at 567.667 kb on - strand at 567.672 kb on - strand at 567.747 kb on - strand at 567.793 kb on - strand at 567.870 kb on + strand, within Echvi_0508 at 567.871 kb on - strand, within Echvi_0508 at 567.874 kb on - strand, within Echvi_0508 at 567.874 kb on - strand, within Echvi_0508 at 567.969 kb on + strand, within Echvi_0508 at 567.969 kb on + strand, within Echvi_0508 at 567.970 kb on - strand, within Echvi_0508 at 568.039 kb on - strand, within Echvi_0508 at 568.066 kb on - strand at 568.086 kb on + strand, within Echvi_0508 at 568.094 kb on - strand, within Echvi_0508 at 568.094 kb on - strand, within Echvi_0508 at 568.094 kb on - strand, within Echvi_0508 at 568.110 kb on - strand, within Echvi_0508 at 568.110 kb on - strand, within Echvi_0508 at 568.110 kb on - strand, within Echvi_0508 at 568.157 kb on + strand, within Echvi_0508 at 568.167 kb on + strand, within Echvi_0508 at 568.170 kb on - strand, within Echvi_0508 at 568.177 kb on + strand, within Echvi_0508 at 568.196 kb on - strand, within Echvi_0508 at 568.200 kb on - strand, within Echvi_0508 at 568.361 kb on + strand, within Echvi_0508 at 568.362 kb on - strand, within Echvi_0508 at 568.362 kb on - strand, within Echvi_0508 at 568.362 kb on - strand, within Echvi_0508 at 568.362 kb on - strand, within Echvi_0508 at 568.397 kb on - strand, within Echvi_0508 at 568.477 kb on - strand, within Echvi_0508 at 568.574 kb on + strand, within Echvi_0508 at 568.574 kb on + strand, within Echvi_0508 at 568.574 kb on + strand, within Echvi_0508 at 568.575 kb on - strand, within Echvi_0508 at 568.575 kb on - strand, within Echvi_0508 at 568.623 kb on - strand, within Echvi_0508 at 568.623 kb on - strand, within Echvi_0508 at 568.623 kb on - strand, within Echvi_0508 at 568.646 kb on + strand, within Echvi_0508 at 568.647 kb on - strand, within Echvi_0508 at 568.726 kb on - strand, within Echvi_0508 at 568.727 kb on + strand, within Echvi_0508 at 568.728 kb on - strand, within Echvi_0508 at 568.728 kb on - strand, within Echvi_0508 at 568.731 kb on + strand, within Echvi_0508 at 568.732 kb on - strand, within Echvi_0508 at 568.733 kb on + strand, within Echvi_0508 at 568.745 kb on + strand, within Echvi_0508 at 568.745 kb on + strand, within Echvi_0508 at 568.746 kb on - strand, within Echvi_0508 at 568.775 kb on + strand, within Echvi_0508 at 568.776 kb on - strand, within Echvi_0508 at 568.801 kb on - strand, within Echvi_0508 at 568.816 kb on - strand, within Echvi_0508 at 568.857 kb on + strand at 568.858 kb on - strand at 568.858 kb on - strand at 568.911 kb on + strand at 568.911 kb on + strand at 568.911 kb on + strand at 568.911 kb on + strand at 568.911 kb on + strand at 568.911 kb on + strand at 568.912 kb on - strand at 568.912 kb on - strand at 568.912 kb on - strand at 568.912 kb on - strand at 568.912 kb on - strand at 568.912 kb on - strand at 568.936 kb on + strand at 568.950 kb on + strand at 568.974 kb on + strand at 569.018 kb on + strand at 569.029 kb on + strand at 569.353 kb on - strand, within Echvi_0509 at 569.353 kb on - strand, within Echvi_0509 at 569.353 kb on - strand, within Echvi_0509 at 569.353 kb on - strand, within Echvi_0509 at 569.404 kb on + strand, within Echvi_0509 at 569.404 kb on + strand, within Echvi_0509 at 569.405 kb on - strand, within Echvi_0509 at 569.405 kb on - strand, within Echvi_0509 at 569.434 kb on + strand, within Echvi_0509 at 569.434 kb on + strand, within Echvi_0509 at 569.601 kb on + strand, within Echvi_0509 at 569.664 kb on + strand, within Echvi_0509 at 569.664 kb on + strand, within Echvi_0509 at 569.664 kb on + strand, within Echvi_0509 at 569.664 kb on + strand, within Echvi_0509 at 569.665 kb on - strand, within Echvi_0509 at 569.665 kb on - strand, within Echvi_0509 at 569.703 kb on + strand, within Echvi_0509 at 569.755 kb on - strand, within Echvi_0509 at 569.938 kb on - strand, within Echvi_0509
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 566,746 + Echvi_0507 0.39 -0.1 566,747 - Echvi_0507 0.39 -0.6 566,747 - Echvi_0507 0.39 +0.5 566,780 + Echvi_0507 0.42 +0.3 566,780 + Echvi_0507 0.42 -0.2 567,044 + Echvi_0507 0.68 +0.6 567,055 + Echvi_0507 0.69 +1.7 567,055 + Echvi_0507 0.69 -1.5 567,161 + Echvi_0507 0.80 -1.8 567,195 - Echvi_0507 0.83 -0.9 567,278 + +0.2 567,281 - -0.4 567,322 + +1.4 567,322 + -0.8 567,323 - +1.6 567,323 - +0.1 567,353 + -0.7 567,354 - -0.5 567,383 - -1.3 567,383 - -1.3 567,387 - +1.4 567,403 + -0.1 567,502 + +1.6 567,503 - +0.3 567,510 + +0.9 567,539 + -1.9 567,558 + +0.5 567,611 + -0.6 567,612 - -0.6 567,612 - -0.6 567,667 - +0.5 567,667 - +0.4 567,672 - -1.1 567,747 - -0.7 567,793 - +0.4 567,870 + Echvi_0508 0.15 -1.0 567,871 - Echvi_0508 0.16 +0.7 567,874 - Echvi_0508 0.16 -1.4 567,874 - Echvi_0508 0.16 +0.3 567,969 + Echvi_0508 0.23 -0.4 567,969 + Echvi_0508 0.23 -0.9 567,970 - Echvi_0508 0.23 -1.2 568,039 - Echvi_0508 0.28 -0.5 568,066 - +1.9 568,086 + Echvi_0508 0.32 -1.8 568,094 - Echvi_0508 0.33 +2.3 568,094 - Echvi_0508 0.33 -1.6 568,094 - Echvi_0508 0.33 -1.1 568,110 - Echvi_0508 0.34 -0.7 568,110 - Echvi_0508 0.34 +0.4 568,110 - Echvi_0508 0.34 -1.2 568,157 + Echvi_0508 0.38 -0.9 568,167 + Echvi_0508 0.38 +0.1 568,170 - Echvi_0508 0.39 -0.1 568,177 + Echvi_0508 0.39 -0.2 568,196 - Echvi_0508 0.41 +0.9 568,200 - Echvi_0508 0.41 +0.3 568,361 + Echvi_0508 0.53 -0.5 568,362 - Echvi_0508 0.53 +0.3 568,362 - Echvi_0508 0.53 -1.7 568,362 - Echvi_0508 0.53 -1.7 568,362 - Echvi_0508 0.53 -0.9 568,397 - Echvi_0508 0.56 +0.5 568,477 - Echvi_0508 0.62 -0.5 568,574 + Echvi_0508 0.70 +2.1 568,574 + Echvi_0508 0.70 +0.0 568,574 + Echvi_0508 0.70 -2.9 568,575 - Echvi_0508 0.70 -0.8 568,575 - Echvi_0508 0.70 -0.9 568,623 - Echvi_0508 0.74 -0.7 568,623 - Echvi_0508 0.74 +0.3 568,623 - Echvi_0508 0.74 -0.1 568,646 + Echvi_0508 0.75 -1.1 568,647 - Echvi_0508 0.75 -0.1 568,726 - Echvi_0508 0.81 +0.0 568,727 + Echvi_0508 0.82 -0.4 568,728 - Echvi_0508 0.82 -0.8 568,728 - Echvi_0508 0.82 -1.1 568,731 + Echvi_0508 0.82 -0.6 568,732 - Echvi_0508 0.82 -0.1 568,733 + Echvi_0508 0.82 +0.1 568,745 + Echvi_0508 0.83 +1.5 568,745 + Echvi_0508 0.83 -0.1 568,746 - Echvi_0508 0.83 +0.3 568,775 + Echvi_0508 0.85 +0.1 568,776 - Echvi_0508 0.85 -0.0 568,801 - Echvi_0508 0.87 -1.8 568,816 - Echvi_0508 0.88 +0.5 568,857 + -0.4 568,858 - +2.6 568,858 - -0.6 568,911 + +0.2 568,911 + -1.5 568,911 + +0.0 568,911 + +1.9 568,911 + +1.2 568,911 + -0.8 568,912 - +1.1 568,912 - -0.9 568,912 - +0.7 568,912 - +0.3 568,912 - -0.5 568,912 - -0.7 568,936 + +0.5 568,950 + +0.7 568,974 + +1.1 569,018 + -0.5 569,029 + -0.7 569,353 - Echvi_0509 0.27 -0.9 569,353 - Echvi_0509 0.27 -1.9 569,353 - Echvi_0509 0.27 -0.6 569,353 - Echvi_0509 0.27 -0.1 569,404 + Echvi_0509 0.32 +0.5 569,404 + Echvi_0509 0.32 -1.2 569,405 - Echvi_0509 0.32 -2.1 569,405 - Echvi_0509 0.32 -0.1 569,434 + Echvi_0509 0.35 -0.2 569,434 + Echvi_0509 0.35 +0.6 569,601 + Echvi_0509 0.51 +0.7 569,664 + Echvi_0509 0.57 -0.8 569,664 + Echvi_0509 0.57 -0.4 569,664 + Echvi_0509 0.57 -0.9 569,664 + Echvi_0509 0.57 +0.0 569,665 - Echvi_0509 0.57 -0.1 569,665 - Echvi_0509 0.57 -1.6 569,703 + Echvi_0509 0.61 -1.1 569,755 - Echvi_0509 0.66 +0.5 569,938 - Echvi_0509 0.83 +0.0
Or see this region's nucleotide sequence