Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0385 and Echvi_0386 are separated by 393 nucleotides Echvi_0386 and Echvi_0387 are separated by 16 nucleotides Echvi_0387 and Echvi_0388 are separated by 577 nucleotides
Echvi_0385: Echvi_0385 - Predicted transcription factor, homolog of eukaryotic MBF1, at 412,764 to 413,048
_0385
Echvi_0386: Echvi_0386 - hypothetical protein, at 413,442 to 413,768
_0386
Echvi_0387: Echvi_0387 - Helix-turn-helix., at 413,785 to 414,171
_0387
Echvi_0388: Echvi_0388 - hypothetical protein, at 414,749 to 415,171
_0388
Position (kb) 413
414
415 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 412.826 kb on + strand, within Echvi_0385 at 412.834 kb on - strand, within Echvi_0385 at 412.834 kb on - strand, within Echvi_0385 at 412.836 kb on - strand, within Echvi_0385 at 412.878 kb on + strand, within Echvi_0385 at 412.878 kb on + strand, within Echvi_0385 at 412.879 kb on - strand, within Echvi_0385 at 412.879 kb on - strand, within Echvi_0385 at 412.976 kb on - strand, within Echvi_0385 at 412.983 kb on + strand, within Echvi_0385 at 412.991 kb on + strand, within Echvi_0385 at 412.992 kb on - strand, within Echvi_0385 at 413.007 kb on - strand, within Echvi_0385 at 413.007 kb on - strand, within Echvi_0385 at 413.016 kb on + strand, within Echvi_0385 at 413.041 kb on + strand at 413.042 kb on - strand at 413.048 kb on + strand at 413.049 kb on - strand at 413.049 kb on - strand at 413.049 kb on - strand at 413.061 kb on + strand at 413.062 kb on - strand at 413.086 kb on + strand at 413.185 kb on - strand at 413.191 kb on + strand at 413.239 kb on + strand at 413.293 kb on + strand at 413.310 kb on + strand at 413.347 kb on - strand at 413.349 kb on + strand at 413.350 kb on - strand at 413.421 kb on - strand at 413.428 kb on + strand at 413.438 kb on - strand at 413.439 kb on + strand at 413.443 kb on + strand at 413.443 kb on + strand at 413.497 kb on + strand, within Echvi_0386 at 413.544 kb on - strand, within Echvi_0386 at 413.544 kb on - strand, within Echvi_0386 at 413.544 kb on - strand, within Echvi_0386 at 413.561 kb on + strand, within Echvi_0386 at 413.561 kb on + strand, within Echvi_0386 at 413.561 kb on + strand, within Echvi_0386 at 413.568 kb on - strand, within Echvi_0386 at 413.568 kb on - strand, within Echvi_0386 at 413.569 kb on + strand, within Echvi_0386 at 413.569 kb on + strand, within Echvi_0386 at 413.570 kb on - strand, within Echvi_0386 at 413.570 kb on - strand, within Echvi_0386 at 413.570 kb on - strand, within Echvi_0386 at 413.576 kb on + strand, within Echvi_0386 at 413.577 kb on - strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.579 kb on - strand, within Echvi_0386 at 413.579 kb on - strand, within Echvi_0386 at 413.579 kb on - strand, within Echvi_0386 at 413.582 kb on + strand, within Echvi_0386 at 413.583 kb on - strand, within Echvi_0386 at 413.613 kb on + strand, within Echvi_0386 at 413.645 kb on + strand, within Echvi_0386 at 413.645 kb on + strand, within Echvi_0386 at 413.708 kb on + strand, within Echvi_0386 at 413.709 kb on - strand, within Echvi_0386 at 413.709 kb on - strand, within Echvi_0386 at 413.768 kb on + strand at 413.768 kb on + strand at 413.769 kb on - strand at 413.769 kb on - strand at 413.769 kb on - strand at 413.780 kb on + strand at 413.781 kb on - strand at 413.781 kb on - strand at 413.793 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.821 kb on - strand at 413.857 kb on + strand, within Echvi_0387 at 413.949 kb on + strand, within Echvi_0387 at 413.972 kb on + strand, within Echvi_0387 at 414.026 kb on + strand, within Echvi_0387 at 414.026 kb on + strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.035 kb on + strand, within Echvi_0387 at 414.081 kb on + strand, within Echvi_0387 at 414.082 kb on - strand, within Echvi_0387 at 414.111 kb on + strand, within Echvi_0387 at 414.111 kb on + strand, within Echvi_0387 at 414.111 kb on + strand, within Echvi_0387 at 414.112 kb on - strand, within Echvi_0387 at 414.112 kb on - strand, within Echvi_0387 at 414.114 kb on + strand, within Echvi_0387 at 414.114 kb on + strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.121 kb on + strand, within Echvi_0387 at 414.172 kb on - strand at 414.172 kb on - strand at 414.175 kb on + strand at 414.176 kb on - strand at 414.176 kb on - strand at 414.182 kb on + strand at 414.182 kb on + strand at 414.183 kb on - strand at 414.187 kb on - strand at 414.193 kb on - strand at 414.193 kb on - strand at 414.204 kb on + strand at 414.204 kb on + strand at 414.233 kb on + strand at 414.233 kb on + strand at 414.234 kb on - strand at 414.237 kb on + strand at 414.246 kb on - strand at 414.246 kb on - strand at 414.247 kb on + strand at 414.314 kb on + strand at 414.314 kb on + strand at 414.315 kb on - strand at 414.320 kb on + strand at 414.320 kb on + strand at 414.321 kb on - strand at 414.321 kb on - strand at 414.460 kb on + strand at 414.479 kb on - strand at 414.499 kb on + strand at 414.512 kb on + strand at 414.520 kb on + strand at 414.520 kb on + strand at 414.523 kb on + strand at 414.551 kb on + strand at 414.552 kb on - strand at 414.567 kb on + strand at 414.567 kb on + strand at 414.567 kb on + strand at 414.567 kb on + strand at 414.567 kb on + strand at 414.574 kb on - strand at 414.588 kb on + strand at 414.588 kb on + strand at 414.601 kb on - strand at 414.603 kb on + strand at 414.634 kb on - strand at 414.640 kb on - strand at 414.653 kb on - strand at 414.669 kb on - strand at 414.880 kb on - strand, within Echvi_0388 at 414.882 kb on + strand, within Echvi_0388 at 414.900 kb on + strand, within Echvi_0388 at 414.911 kb on - strand, within Echvi_0388 at 414.941 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 415.006 kb on + strand, within Echvi_0388 at 415.048 kb on + strand, within Echvi_0388 at 415.048 kb on + strand, within Echvi_0388 at 415.049 kb on - strand, within Echvi_0388 at 415.049 kb on - strand, within Echvi_0388 at 415.049 kb on - strand, within Echvi_0388 at 415.147 kb on - strand at 415.166 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 412,826 + Echvi_0385 0.22 -2.2 412,834 - Echvi_0385 0.25 -1.0 412,834 - Echvi_0385 0.25 -0.1 412,836 - Echvi_0385 0.25 +0.3 412,878 + Echvi_0385 0.40 -0.3 412,878 + Echvi_0385 0.40 +0.4 412,879 - Echvi_0385 0.40 +0.1 412,879 - Echvi_0385 0.40 -0.9 412,976 - Echvi_0385 0.74 -1.2 412,983 + Echvi_0385 0.77 +2.8 412,991 + Echvi_0385 0.80 +0.1 412,992 - Echvi_0385 0.80 -2.3 413,007 - Echvi_0385 0.85 +2.4 413,007 - Echvi_0385 0.85 -1.9 413,016 + Echvi_0385 0.88 +0.6 413,041 + +1.0 413,042 - -1.2 413,048 + -0.5 413,049 - +2.2 413,049 - +1.1 413,049 - +1.8 413,061 + +0.4 413,062 - -3.0 413,086 + -0.0 413,185 - +1.1 413,191 + -0.5 413,239 + -0.6 413,293 + +0.7 413,310 + +0.8 413,347 - +0.4 413,349 + -0.5 413,350 - +0.5 413,421 - +1.1 413,428 + +0.4 413,438 - +0.5 413,439 + +1.5 413,443 + -1.6 413,443 + +1.7 413,497 + Echvi_0386 0.17 +0.1 413,544 - Echvi_0386 0.31 +0.3 413,544 - Echvi_0386 0.31 -2.4 413,544 - Echvi_0386 0.31 -0.0 413,561 + Echvi_0386 0.36 +0.2 413,561 + Echvi_0386 0.36 +1.4 413,561 + Echvi_0386 0.36 +1.2 413,568 - Echvi_0386 0.39 +1.8 413,568 - Echvi_0386 0.39 -0.4 413,569 + Echvi_0386 0.39 +0.8 413,569 + Echvi_0386 0.39 -0.1 413,570 - Echvi_0386 0.39 -0.4 413,570 - Echvi_0386 0.39 +1.3 413,570 - Echvi_0386 0.39 -1.6 413,576 + Echvi_0386 0.41 -2.1 413,577 - Echvi_0386 0.41 -1.2 413,578 + Echvi_0386 0.42 -0.1 413,578 + Echvi_0386 0.42 -0.7 413,578 + Echvi_0386 0.42 -0.0 413,578 + Echvi_0386 0.42 +0.0 413,578 + Echvi_0386 0.42 -0.3 413,578 + Echvi_0386 0.42 +0.5 413,578 + Echvi_0386 0.42 -0.0 413,578 + Echvi_0386 0.42 -0.2 413,578 + Echvi_0386 0.42 -0.5 413,578 + Echvi_0386 0.42 -1.0 413,579 - Echvi_0386 0.42 +0.1 413,579 - Echvi_0386 0.42 +2.2 413,579 - Echvi_0386 0.42 +0.4 413,582 + Echvi_0386 0.43 -0.3 413,583 - Echvi_0386 0.43 -0.0 413,613 + Echvi_0386 0.52 -0.2 413,645 + Echvi_0386 0.62 +0.1 413,645 + Echvi_0386 0.62 +0.8 413,708 + Echvi_0386 0.81 -0.7 413,709 - Echvi_0386 0.82 +0.4 413,709 - Echvi_0386 0.82 -1.4 413,768 + -0.0 413,768 + +0.1 413,769 - +0.0 413,769 - -2.2 413,769 - +0.2 413,780 + -0.6 413,781 - -0.6 413,781 - -0.2 413,793 + -0.5 413,820 + -0.1 413,820 + -0.7 413,820 + +0.4 413,820 + +0.1 413,820 + +0.5 413,821 - -0.9 413,857 + Echvi_0387 0.19 +1.2 413,949 + Echvi_0387 0.42 +0.6 413,972 + Echvi_0387 0.48 -0.7 414,026 + Echvi_0387 0.62 -0.5 414,026 + Echvi_0387 0.62 +0.8 414,027 - Echvi_0387 0.63 -2.0 414,027 - Echvi_0387 0.63 +1.3 414,027 - Echvi_0387 0.63 +0.1 414,027 - Echvi_0387 0.63 +1.8 414,035 + Echvi_0387 0.65 +0.7 414,081 + Echvi_0387 0.76 +0.3 414,082 - Echvi_0387 0.77 +0.7 414,111 + Echvi_0387 0.84 +0.7 414,111 + Echvi_0387 0.84 +0.4 414,111 + Echvi_0387 0.84 -0.3 414,112 - Echvi_0387 0.84 -0.3 414,112 - Echvi_0387 0.84 +0.8 414,114 + Echvi_0387 0.85 +0.3 414,114 + Echvi_0387 0.85 -0.1 414,115 - Echvi_0387 0.85 +0.2 414,115 - Echvi_0387 0.85 -0.3 414,115 - Echvi_0387 0.85 -0.7 414,115 - Echvi_0387 0.85 -0.8 414,115 - Echvi_0387 0.85 +1.2 414,115 - Echvi_0387 0.85 +0.2 414,121 + Echvi_0387 0.87 -0.4 414,172 - +1.8 414,172 - +2.0 414,175 + +0.3 414,176 - -0.5 414,176 - +2.3 414,182 + +0.5 414,182 + -0.8 414,183 - -0.2 414,187 - +0.3 414,193 - +0.8 414,193 - -0.2 414,204 + -1.0 414,204 + +1.1 414,233 + +0.8 414,233 + +0.3 414,234 - -1.2 414,237 + -0.0 414,246 - +1.0 414,246 - -0.7 414,247 + +0.8 414,314 + -0.7 414,314 + -0.2 414,315 - -0.6 414,320 + +0.3 414,320 + -0.1 414,321 - +1.2 414,321 - -0.8 414,460 + +0.6 414,479 - -0.3 414,499 + +0.0 414,512 + +0.1 414,520 + -0.3 414,520 + +0.6 414,523 + -0.2 414,551 + -1.6 414,552 - +1.9 414,567 + +0.3 414,567 + -0.4 414,567 + +0.9 414,567 + -1.5 414,567 + -0.4 414,574 - -0.1 414,588 + -0.4 414,588 + +0.8 414,601 - +0.3 414,603 + -1.0 414,634 - -0.5 414,640 - -0.5 414,653 - -0.4 414,669 - -0.3 414,880 - Echvi_0388 0.31 -0.2 414,882 + Echvi_0388 0.31 +0.4 414,900 + Echvi_0388 0.36 -0.6 414,911 - Echvi_0388 0.38 +0.5 414,941 - Echvi_0388 0.45 -0.4 414,992 - Echvi_0388 0.57 -0.7 414,992 - Echvi_0388 0.57 +0.4 414,992 - Echvi_0388 0.57 -0.0 414,992 - Echvi_0388 0.57 -0.8 415,006 + Echvi_0388 0.61 -0.6 415,048 + Echvi_0388 0.71 +0.0 415,048 + Echvi_0388 0.71 -1.2 415,049 - Echvi_0388 0.71 -0.9 415,049 - Echvi_0388 0.71 +0.9 415,049 - Echvi_0388 0.71 -0.1 415,147 - +0.6 415,166 - -0.1
Or see this region's nucleotide sequence