Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0345

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0344 and Echvi_0345 are separated by 122 nucleotidesEchvi_0345 and Echvi_0346 are separated by 81 nucleotidesEchvi_0346 and Echvi_0347 overlap by 35 nucleotides Echvi_0344: Echvi_0344 - ComEC/Rec2-related protein, at 365,962 to 367,920 _0344 Echvi_0345: Echvi_0345 - hypothetical protein, at 368,043 to 368,585 _0345 Echvi_0346: Echvi_0346 - Predicted acyltransferase, at 368,667 to 369,107 _0346 Echvi_0347: Echvi_0347 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 369,073 to 370,065 _0347 Position (kb) 368 369Strain fitness (log2 ratio) -2 -1 0 1 2 3at 367.109 kb on + strand, within Echvi_0344at 367.113 kb on + strand, within Echvi_0344at 367.113 kb on + strand, within Echvi_0344at 367.126 kb on + strand, within Echvi_0344at 367.169 kb on + strand, within Echvi_0344at 367.170 kb on - strand, within Echvi_0344at 367.294 kb on + strand, within Echvi_0344at 367.294 kb on + strand, within Echvi_0344at 367.321 kb on - strand, within Echvi_0344at 367.321 kb on - strand, within Echvi_0344at 367.371 kb on - strand, within Echvi_0344at 367.499 kb on + strand, within Echvi_0344at 367.550 kb on + strand, within Echvi_0344at 367.550 kb on + strand, within Echvi_0344at 367.551 kb on - strand, within Echvi_0344at 367.554 kb on + strand, within Echvi_0344at 367.619 kb on + strand, within Echvi_0344at 367.619 kb on + strand, within Echvi_0344at 367.676 kb on - strand, within Echvi_0344at 367.683 kb on + strand, within Echvi_0344at 367.746 kb on + strandat 367.839 kb on + strandat 367.856 kb on + strandat 367.856 kb on + strandat 367.856 kb on + strandat 367.856 kb on + strandat 367.856 kb on + strandat 367.856 kb on + strandat 367.857 kb on - strandat 367.857 kb on - strandat 367.857 kb on - strandat 367.857 kb on - strandat 367.889 kb on + strandat 367.889 kb on + strandat 367.890 kb on - strandat 367.890 kb on - strandat 367.944 kb on - strandat 367.944 kb on - strandat 367.944 kb on - strandat 367.954 kb on - strandat 368.029 kb on + strandat 368.044 kb on + strandat 368.077 kb on - strandat 368.133 kb on + strand, within Echvi_0345at 368.133 kb on + strand, within Echvi_0345at 368.134 kb on - strand, within Echvi_0345at 368.177 kb on - strand, within Echvi_0345at 368.270 kb on + strand, within Echvi_0345at 368.270 kb on + strand, within Echvi_0345at 368.271 kb on - strand, within Echvi_0345at 368.271 kb on - strand, within Echvi_0345at 368.287 kb on + strand, within Echvi_0345at 368.287 kb on + strand, within Echvi_0345at 368.287 kb on + strand, within Echvi_0345at 368.287 kb on + strand, within Echvi_0345at 368.288 kb on - strand, within Echvi_0345at 368.288 kb on - strand, within Echvi_0345at 368.288 kb on - strand, within Echvi_0345at 368.288 kb on - strand, within Echvi_0345at 368.291 kb on + strand, within Echvi_0345at 368.291 kb on + strand, within Echvi_0345at 368.291 kb on + strand, within Echvi_0345at 368.291 kb on + strand, within Echvi_0345at 368.291 kb on + strand, within Echvi_0345at 368.292 kb on - strand, within Echvi_0345at 368.384 kb on + strand, within Echvi_0345at 368.483 kb on + strand, within Echvi_0345at 368.484 kb on - strand, within Echvi_0345at 368.484 kb on - strand, within Echvi_0345at 368.533 kb on + strandat 368.534 kb on - strandat 368.567 kb on + strandat 368.568 kb on - strandat 368.568 kb on - strandat 368.568 kb on - strandat 368.571 kb on + strandat 368.571 kb on + strandat 368.572 kb on - strandat 368.572 kb on - strandat 368.575 kb on - strandat 368.590 kb on + strandat 368.594 kb on + strandat 368.594 kb on + strandat 368.653 kb on + strandat 368.674 kb on + strandat 368.749 kb on + strand, within Echvi_0346at 368.750 kb on - strand, within Echvi_0346at 368.782 kb on + strand, within Echvi_0346at 368.782 kb on + strand, within Echvi_0346at 368.782 kb on + strand, within Echvi_0346at 368.782 kb on + strand, within Echvi_0346at 368.782 kb on + strand, within Echvi_0346at 368.831 kb on + strand, within Echvi_0346at 368.995 kb on + strand, within Echvi_0346at 368.996 kb on - strand, within Echvi_0346at 369.074 kb on + strandat 369.123 kb on + strandat 369.124 kb on - strandat 369.143 kb on + strandat 369.144 kb on - strandat 369.144 kb on - strandat 369.144 kb on - strandat 369.144 kb on - strandat 369.220 kb on + strand, within Echvi_0347at 369.221 kb on - strand, within Echvi_0347at 369.419 kb on + strand, within Echvi_0347at 369.420 kb on - strand, within Echvi_0347at 369.486 kb on + strand, within Echvi_0347at 369.486 kb on + strand, within Echvi_0347

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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367,109 + Echvi_0344 0.59 +0.5
367,113 + Echvi_0344 0.59 -0.8
367,113 + Echvi_0344 0.59 -0.1
367,126 + Echvi_0344 0.59 +0.1
367,169 + Echvi_0344 0.62 +0.1
367,170 - Echvi_0344 0.62 -1.8
367,294 + Echvi_0344 0.68 +0.1
367,294 + Echvi_0344 0.68 +0.4
367,321 - Echvi_0344 0.69 +1.4
367,321 - Echvi_0344 0.69 -0.3
367,371 - Echvi_0344 0.72 -2.7
367,499 + Echvi_0344 0.78 +0.5
367,550 + Echvi_0344 0.81 -1.5
367,550 + Echvi_0344 0.81 -0.1
367,551 - Echvi_0344 0.81 -1.5
367,554 + Echvi_0344 0.81 +0.4
367,619 + Echvi_0344 0.85 -0.2
367,619 + Echvi_0344 0.85 -2.0
367,676 - Echvi_0344 0.87 -0.3
367,683 + Echvi_0344 0.88 -0.5
367,746 + -0.7
367,839 + -1.1
367,856 + +0.2
367,856 + -0.3
367,856 + +1.8
367,856 + +1.2
367,856 + -0.5
367,856 + +3.6
367,857 - -2.6
367,857 - +0.3
367,857 - -1.2
367,857 - -0.1
367,889 + -1.3
367,889 + +1.2
367,890 - -0.5
367,890 - -0.7
367,944 - -0.3
367,944 - +0.6
367,944 - -1.7
367,954 - +0.3
368,029 + +0.6
368,044 + +0.7
368,077 - +1.3
368,133 + Echvi_0345 0.17 +1.1
368,133 + Echvi_0345 0.17 +0.7
368,134 - Echvi_0345 0.17 -1.3
368,177 - Echvi_0345 0.25 -0.6
368,270 + Echvi_0345 0.42 +1.0
368,270 + Echvi_0345 0.42 -0.8
368,271 - Echvi_0345 0.42 -1.9
368,271 - Echvi_0345 0.42 +1.8
368,287 + Echvi_0345 0.45 +0.4
368,287 + Echvi_0345 0.45 +1.8
368,287 + Echvi_0345 0.45 +0.5
368,287 + Echvi_0345 0.45 -0.3
368,288 - Echvi_0345 0.45 +0.9
368,288 - Echvi_0345 0.45 -0.5
368,288 - Echvi_0345 0.45 -1.2
368,288 - Echvi_0345 0.45 +0.8
368,291 + Echvi_0345 0.46 -0.7
368,291 + Echvi_0345 0.46 +0.4
368,291 + Echvi_0345 0.46 +0.4
368,291 + Echvi_0345 0.46 -0.0
368,291 + Echvi_0345 0.46 +1.2
368,292 - Echvi_0345 0.46 +0.8
368,384 + Echvi_0345 0.63 +1.8
368,483 + Echvi_0345 0.81 +0.4
368,484 - Echvi_0345 0.81 -0.5
368,484 - Echvi_0345 0.81 +2.1
368,533 + -0.4
368,534 - -1.0
368,567 + +0.1
368,568 - +2.2
368,568 - +0.7
368,568 - +0.0
368,571 + -1.9
368,571 + -0.3
368,572 - -0.6
368,572 - -1.0
368,575 - -0.9
368,590 + -0.2
368,594 + -0.7
368,594 + -0.3
368,653 + -2.1
368,674 + +0.8
368,749 + Echvi_0346 0.19 +0.2
368,750 - Echvi_0346 0.19 +0.4
368,782 + Echvi_0346 0.26 +1.8
368,782 + Echvi_0346 0.26 +0.3
368,782 + Echvi_0346 0.26 +0.8
368,782 + Echvi_0346 0.26 +0.2
368,782 + Echvi_0346 0.26 +0.4
368,831 + Echvi_0346 0.37 +0.1
368,995 + Echvi_0346 0.74 -0.4
368,996 - Echvi_0346 0.75 +0.1
369,074 + -1.0
369,123 + -1.0
369,124 - +1.4
369,143 + +0.4
369,144 - +0.6
369,144 - +0.2
369,144 - -0.8
369,144 - -1.4
369,220 + Echvi_0347 0.15 -0.1
369,221 - Echvi_0347 0.15 -2.0
369,419 + Echvi_0347 0.35 +0.7
369,420 - Echvi_0347 0.35 -0.5
369,486 + Echvi_0347 0.42 +0.8
369,486 + Echvi_0347 0.42 +0.6

Or see this region's nucleotide sequence