Experiment: Betanin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3597 and Atu3598 are separated by 46 nucleotides Atu3598 and Atu3599 are separated by 22 nucleotides
Atu3597: Atu3597 - 3-hydroxybutyryl-CoA dehydrogenase, at 651,491 to 652,372
Atu3597
Atu3598: Atu3598 - thiol:disulfide interchange protein, at 652,419 to 653,087
Atu3598
Atu3599: Atu3599 - argininosuccinate lyase, at 653,110 to 654,510
Atu3599
Position (kb) 652
653
654 Strain fitness (log2 ratio) -2
-1
0
1 at 651.530 kb on + strand at 651.589 kb on - strand, within Atu3597 at 651.663 kb on + strand, within Atu3597 at 651.696 kb on + strand, within Atu3597 at 651.753 kb on - strand, within Atu3597 at 651.805 kb on + strand, within Atu3597 at 651.805 kb on + strand, within Atu3597 at 651.813 kb on - strand, within Atu3597 at 651.901 kb on + strand, within Atu3597 at 652.069 kb on - strand, within Atu3597 at 652.108 kb on + strand, within Atu3597 at 652.108 kb on + strand, within Atu3597 at 652.108 kb on + strand, within Atu3597 at 652.116 kb on - strand, within Atu3597 at 652.116 kb on - strand, within Atu3597 at 652.272 kb on + strand, within Atu3597 at 652.272 kb on + strand, within Atu3597 at 652.439 kb on + strand at 652.472 kb on - strand at 652.472 kb on - strand at 652.525 kb on - strand, within Atu3598 at 652.811 kb on - strand, within Atu3598 at 652.954 kb on - strand, within Atu3598
Per-strain Table
Position Strand Gene LocusTag Fraction Betanin (C) remove 651,530 + -0.6 651,589 - Atu3597 0.11 +0.3 651,663 + Atu3597 0.20 +0.8 651,696 + Atu3597 0.23 -0.3 651,753 - Atu3597 0.30 +0.2 651,805 + Atu3597 0.36 +0.2 651,805 + Atu3597 0.36 +0.3 651,813 - Atu3597 0.37 -0.1 651,901 + Atu3597 0.46 +0.4 652,069 - Atu3597 0.66 -0.6 652,108 + Atu3597 0.70 +0.2 652,108 + Atu3597 0.70 +0.1 652,108 + Atu3597 0.70 -0.3 652,116 - Atu3597 0.71 -0.2 652,116 - Atu3597 0.71 +0.1 652,272 + Atu3597 0.89 +0.1 652,272 + Atu3597 0.89 +0.5 652,439 + -0.2 652,472 - -1.8 652,472 - -0.4 652,525 - Atu3598 0.16 -2.1 652,811 - Atu3598 0.59 -0.7 652,954 - Atu3598 0.80 +0.2
Or see this region's nucleotide sequence