Experiment: 1-ethyl-3-methylimidazolium acetate 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yqeH and yqeI are separated by 333 nucleotides yqeI and yqeJ overlap by 8 nucleotides yqeJ and yqeL are separated by 32 nucleotides yqeL and yqeK are separated by 35 nucleotides
b2846: yqeH - orf, hypothetical protein (VIMSS), at 2,985,558 to 2,986,190
yqeH
b2847: yqeI - predicted transcriptional regulator (NCBI), at 2,986,524 to 2,987,333
yqeI
b2848: yqeJ - orf, hypothetical protein (VIMSS), at 2,987,326 to 2,987,808
yqeJ
b4683: yqeL - expressed protein (RefSeq), at 2,987,841 to 2,987,921
yqeL
b2849: yqeK - orf, hypothetical protein (VIMSS), at 2,987,957 to 2,988,382
yqeK
Position (kb)
2986
2987
2988 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2985.575 kb on + strand at 2985.829 kb on + strand, within yqeH at 2985.916 kb on + strand, within yqeH at 2986.179 kb on + strand at 2986.179 kb on + strand at 2986.213 kb on + strand at 2986.481 kb on - strand at 2986.590 kb on - strand at 2986.625 kb on - strand, within yqeI at 2986.657 kb on + strand, within yqeI at 2986.674 kb on - strand, within yqeI at 2986.710 kb on + strand, within yqeI at 2986.711 kb on + strand, within yqeI at 2986.715 kb on + strand, within yqeI at 2986.715 kb on + strand, within yqeI at 2986.737 kb on + strand, within yqeI at 2986.745 kb on - strand, within yqeI at 2986.776 kb on + strand, within yqeI at 2986.776 kb on + strand, within yqeI at 2986.783 kb on + strand, within yqeI at 2986.860 kb on + strand, within yqeI at 2986.875 kb on + strand, within yqeI at 2986.882 kb on + strand, within yqeI at 2986.884 kb on + strand, within yqeI at 2986.884 kb on + strand, within yqeI at 2986.886 kb on + strand, within yqeI at 2986.886 kb on + strand, within yqeI at 2986.890 kb on + strand, within yqeI at 2986.892 kb on + strand, within yqeI at 2986.924 kb on + strand, within yqeI at 2987.296 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 30 mM remove 2,985,575 + -0.0 2,985,829 + yqeH b2846 0.43 +0.4 2,985,916 + yqeH b2846 0.57 -0.3 2,986,179 + -1.3 2,986,179 + -0.0 2,986,213 + +0.6 2,986,481 - -0.6 2,986,590 - -0.6 2,986,625 - yqeI b2847 0.12 -3.3 2,986,657 + yqeI b2847 0.16 -0.5 2,986,674 - yqeI b2847 0.19 -0.0 2,986,710 + yqeI b2847 0.23 -0.5 2,986,711 + yqeI b2847 0.23 -2.6 2,986,715 + yqeI b2847 0.24 -0.2 2,986,715 + yqeI b2847 0.24 -0.6 2,986,737 + yqeI b2847 0.26 -1.0 2,986,745 - yqeI b2847 0.27 -0.8 2,986,776 + yqeI b2847 0.31 -0.8 2,986,776 + yqeI b2847 0.31 -1.0 2,986,783 + yqeI b2847 0.32 -1.8 2,986,860 + yqeI b2847 0.41 -0.6 2,986,875 + yqeI b2847 0.43 -0.5 2,986,882 + yqeI b2847 0.44 -1.2 2,986,884 + yqeI b2847 0.44 -0.0 2,986,884 + yqeI b2847 0.44 -1.1 2,986,886 + yqeI b2847 0.45 -0.0 2,986,886 + yqeI b2847 0.45 -0.6 2,986,890 + yqeI b2847 0.45 -1.8 2,986,892 + yqeI b2847 0.45 -1.5 2,986,924 + yqeI b2847 0.49 -2.2 2,987,296 + -0.1
Or see this region's nucleotide sequence