Strain Fitness in Escherichia coli BW25113 around b1035

Experiment: 1-ethyl-3-methylimidazolium acetate 30 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium acetate 30 mM
1,097,934	-	ycdW	b1033	0.88	+0.4
1,097,941	+	ycdW	b1033	0.89	+0.3
1,098,011	+				+1.3
1,098,107	-				-0.5
1,098,107	-				-1.7
1,098,140	+				+1.5
1,098,174	+				+1.4
1,098,250	+	ycdX	b1034	0.20	+0.7
1,098,274	-	ycdX	b1034	0.23	-1.0
1,098,295	+	ycdX	b1034	0.26	+0.5
1,098,303	-	ycdX	b1034	0.27	-0.7
1,098,304	-	ycdX	b1034	0.27	+0.1
1,098,304	-	ycdX	b1034	0.27	+0.8
1,098,390	-	ycdX	b1034	0.39	-0.4
1,098,390	-	ycdX	b1034	0.39	-0.2
1,098,447	-	ycdX	b1034	0.47	+0.3
1,098,459	+	ycdX	b1034	0.48	+0.2
1,098,465	-	ycdX	b1034	0.49	-0.6
1,098,465	-	ycdX	b1034	0.49	+0.1
1,098,656	-	ycdX	b1034	0.75	+0.8
1,098,800	+				+1.6
1,098,805	+				+0.5
1,098,805	+				+1.4
1,098,810	+				+1.2
1,098,813	-				+0.5
1,098,813	-				+2.6
1,098,826	+				+0.5
1,098,888	-				+1.4
1,098,892	+				+0.0
1,098,924	+	ycdY	b1035	0.11	+1.2
1,098,998	+	ycdY	b1035	0.24	+0.6
1,099,046	+	ycdY	b1035	0.33	+0.8
1,099,106	-	ycdY	b1035	0.44	+0.2
1,099,106	-	ycdY	b1035	0.44	-0.3
1,099,189	+	ycdY	b1035	0.59	+0.8
1,099,270	-	ycdY	b1035	0.73	-0.5
1,099,290	+	ycdY	b1035	0.77	+1.5
1,099,293	-	ycdY	b1035	0.77	+0.8
1,099,293	-	ycdY	b1035	0.77	-0.9
1,099,313	+	ycdY	b1035	0.81	+1.7
1,099,313	+	ycdY	b1035	0.81	+0.1
1,099,355	-	ycdY	b1035	0.89	+0.6
1,099,588	+	ycdZ	b1036	0.14	+2.7
1,099,623	-	ycdZ	b1036	0.21	+4.5
1,099,702	+	ycdZ	b1036	0.37	+2.7
1,099,702	+	ycdZ	b1036	0.37	+2.4
1,099,710	-	ycdZ	b1036	0.39	+2.9
1,099,727	+	ycdZ	b1036	0.42	+1.4
1,099,758	+	ycdZ	b1036	0.49	+3.1
1,099,812	-	ycdZ	b1036	0.60	+2.4
1,099,880	-	ycdZ	b1036	0.73	+3.1
1,099,962	+				+2.4
1,099,987	-				+2.7
1,099,987	-				+3.2
1,100,096	-				-0.3
1,100,152	+				-0.7
1,100,152	+				-0.4
1,100,172	-	csgG	b1037	0.12	-0.3
1,100,172	-	csgG	b1037	0.12	+0.2
1,100,172	-	csgG	b1037	0.12	-0.1
1,100,221	-	csgG	b1037	0.18	+1.2
1,100,223	+	csgG	b1037	0.18	-0.1
1,100,223	+	csgG	b1037	0.18	-0.7
1,100,235	+	csgG	b1037	0.19	+0.6
1,100,249	-	csgG	b1037	0.21	-0.0
1,100,251	-	csgG	b1037	0.21	+0.2
1,100,265	-	csgG	b1037	0.23	+0.1
1,100,363	-	csgG	b1037	0.35	+0.6
1,100,410	-	csgG	b1037	0.40	-0.1
1,100,410	-	csgG	b1037	0.40	+2.3