Experiment: apoplastic, chopping recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1977 and Psyr_RNA36 are separated by 148 nucleotides Psyr_RNA36 and Psyr_RNA37 are separated by 88 nucleotides Psyr_RNA37 and Psyr_RNA38 are separated by 51 nucleotides Psyr_RNA38 and Psyr_RNA39 are separated by 46 nucleotides Psyr_RNA39 and Psyr_1978 are separated by 521 nucleotides
Psyr_1977: Psyr_1977 - glutamyl-tRNA synthetase, at 2,294,713 to 2,296,194
_1977
Psyr_RNA36: Psyr_RNA36 - tRNA-Ala, at 2,296,343 to 2,296,418
_RNA36
Psyr_RNA37: Psyr_RNA37 - tRNA-Glu, at 2,296,507 to 2,296,582
_RNA37
Psyr_RNA38: Psyr_RNA38 - tRNA-Ala, at 2,296,634 to 2,296,709
_RNA38
Psyr_RNA39: Psyr_RNA39 - tRNA-Glu, at 2,296,756 to 2,296,831
_RNA39
Psyr_1978: Psyr_1978 - Thioesterase superfamily, at 2,297,353 to 2,297,814
_1978
Position (kb)
2296
2297 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2296.255 kb on + strand at 2296.442 kb on + strand at 2296.551 kb on + strand, within Psyr_RNA37 at 2296.627 kb on + strand at 2296.922 kb on + strand at 2296.923 kb on - strand at 2296.927 kb on - strand at 2296.944 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.066 kb on + strand at 2297.066 kb on + strand at 2297.066 kb on + strand at 2297.066 kb on + strand at 2297.066 kb on + strand at 2297.066 kb on + strand at 2297.066 kb on + strand at 2297.066 kb on + strand at 2297.066 kb on + strand at 2297.066 kb on + strand at 2297.066 kb on + strand at 2297.066 kb on + strand at 2297.066 kb on + strand at 2297.067 kb on - strand at 2297.067 kb on - strand at 2297.067 kb on - strand at 2297.067 kb on - strand at 2297.067 kb on - strand at 2297.067 kb on - strand at 2297.067 kb on - strand at 2297.067 kb on - strand at 2297.067 kb on - strand at 2297.103 kb on + strand at 2297.103 kb on + strand at 2297.104 kb on - strand at 2297.104 kb on - strand at 2297.182 kb on + strand at 2297.183 kb on - strand at 2297.314 kb on - strand at 2297.334 kb on + strand at 2297.334 kb on + strand at 2297.334 kb on + strand at 2297.334 kb on + strand at 2297.335 kb on - strand at 2297.335 kb on - strand at 2297.335 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean remove 2,296,255 + +2.1 2,296,442 + -0.1 2,296,551 + Psyr_RNA37 0.58 -0.7 2,296,627 + +1.0 2,296,922 + +0.2 2,296,923 - +0.0 2,296,927 - -0.7 2,296,944 + +0.5 2,297,062 + +0.5 2,297,062 + -1.7 2,297,062 + +0.0 2,297,062 + +1.8 2,297,062 + -0.5 2,297,062 + -3.9 2,297,062 + +0.0 2,297,062 + +0.8 2,297,062 + -2.3 2,297,062 + +0.3 2,297,062 + +0.6 2,297,062 + +0.9 2,297,062 + +0.4 2,297,062 + +1.8 2,297,063 - -1.2 2,297,063 - +0.1 2,297,063 - -0.8 2,297,063 - -0.9 2,297,063 - +1.2 2,297,063 - -3.1 2,297,063 - +1.3 2,297,063 - -1.2 2,297,066 + -0.0 2,297,066 + -0.8 2,297,066 + +1.1 2,297,066 + -1.3 2,297,066 + -0.5 2,297,066 + -0.9 2,297,066 + -1.7 2,297,066 + +1.3 2,297,066 + -2.0 2,297,066 + +0.6 2,297,066 + +0.9 2,297,066 + +1.0 2,297,066 + +0.5 2,297,067 - +0.3 2,297,067 - +1.0 2,297,067 - -0.1 2,297,067 - -0.0 2,297,067 - -0.7 2,297,067 - -3.0 2,297,067 - -0.5 2,297,067 - +1.6 2,297,067 - -2.2 2,297,103 + -1.5 2,297,103 + -0.8 2,297,104 - -0.7 2,297,104 - -1.2 2,297,182 + +0.0 2,297,183 - +0.2 2,297,314 - +1.0 2,297,334 + +1.8 2,297,334 + -0.3 2,297,334 + -2.5 2,297,334 + -1.7 2,297,335 - -0.5 2,297,335 - -0.5 2,297,335 - +0.0
Or see this region's nucleotide sequence