Experiment: apoplastic, chopping recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3550 and Psyr_3551 are separated by 429 nucleotides Psyr_3551 and Psyr_3552 are separated by 186 nucleotides Psyr_3552 and Psyr_3553 are separated by 325 nucleotides Psyr_3553 and Psyr_RNA54 are separated by 44 nucleotides
Psyr_3550: Psyr_3550 - conserved hypothetical protein, at 4,229,485 to 4,229,670
_3550
Psyr_3551: Psyr_3551 - Arc-like DNA binding protein, at 4,230,100 to 4,230,426
_3551
Psyr_3552: Psyr_3552 - Divalent cation transporter, at 4,230,613 to 4,232,055
_3552
Psyr_3553: Psyr_3553 - conserved hypothetical protein, at 4,232,381 to 4,232,872
_3553
Psyr_RNA54: Psyr_RNA54 - tRNA-Arg, at 4,232,917 to 4,232,993
_RNA54
Position (kb) 4230
4231
4232
4233 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4229.680 kb on + strand at 4229.681 kb on - strand at 4229.807 kb on - strand at 4229.807 kb on - strand at 4229.858 kb on + strand at 4229.977 kb on - strand at 4230.066 kb on - strand at 4230.066 kb on - strand at 4230.085 kb on + strand at 4230.097 kb on + strand at 4230.097 kb on + strand at 4230.098 kb on - strand at 4230.098 kb on - strand at 4230.099 kb on + strand at 4230.099 kb on + strand at 4230.100 kb on - strand at 4230.100 kb on - strand at 4230.120 kb on + strand at 4230.120 kb on + strand at 4230.121 kb on - strand at 4230.124 kb on + strand at 4230.124 kb on + strand at 4230.437 kb on - strand at 4230.502 kb on + strand at 4230.598 kb on + strand at 4230.615 kb on - strand at 4231.845 kb on - strand, within Psyr_3552 at 4232.056 kb on - strand at 4232.199 kb on - strand at 4232.199 kb on - strand at 4232.199 kb on - strand at 4232.199 kb on - strand at 4232.199 kb on - strand at 4232.344 kb on + strand at 4232.400 kb on + strand at 4232.400 kb on + strand at 4232.400 kb on + strand at 4232.400 kb on + strand at 4232.400 kb on + strand at 4232.400 kb on + strand at 4232.401 kb on - strand at 4232.401 kb on - strand at 4232.401 kb on - strand at 4232.492 kb on - strand, within Psyr_3553 at 4232.492 kb on - strand, within Psyr_3553 at 4232.596 kb on + strand, within Psyr_3553 at 4232.597 kb on - strand, within Psyr_3553 at 4232.597 kb on - strand, within Psyr_3553 at 4232.795 kb on + strand, within Psyr_3553 at 4232.795 kb on + strand, within Psyr_3553 at 4232.795 kb on + strand, within Psyr_3553 at 4232.795 kb on + strand, within Psyr_3553 at 4232.795 kb on + strand, within Psyr_3553 at 4232.795 kb on + strand, within Psyr_3553 at 4232.796 kb on - strand, within Psyr_3553 at 4232.801 kb on + strand, within Psyr_3553 at 4232.801 kb on + strand, within Psyr_3553 at 4232.801 kb on + strand, within Psyr_3553 at 4232.802 kb on - strand, within Psyr_3553 at 4232.802 kb on - strand, within Psyr_3553 at 4232.827 kb on + strand at 4232.828 kb on - strand at 4232.858 kb on - strand at 4232.870 kb on + strand at 4232.916 kb on - strand at 4232.916 kb on - strand at 4232.916 kb on - strand at 4232.916 kb on - strand at 4232.986 kb on - strand at 4233.050 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean remove 4,229,680 + +0.8 4,229,681 - +1.4 4,229,807 - +0.3 4,229,807 - -2.7 4,229,858 + +0.0 4,229,977 - -0.2 4,230,066 - -0.6 4,230,066 - +0.0 4,230,085 + -0.4 4,230,097 + -1.3 4,230,097 + +0.0 4,230,098 - -2.4 4,230,098 - -1.3 4,230,099 + -1.6 4,230,099 + -1.6 4,230,100 - -2.0 4,230,100 - -3.3 4,230,120 + -0.9 4,230,120 + -1.3 4,230,121 - -1.1 4,230,124 + +0.8 4,230,124 + -2.8 4,230,437 - +1.2 4,230,502 + +0.2 4,230,598 + +0.0 4,230,615 - +0.5 4,231,845 - Psyr_3552 0.85 +2.2 4,232,056 - +2.3 4,232,199 - -0.6 4,232,199 - -1.8 4,232,199 - -0.6 4,232,199 - -0.2 4,232,199 - -0.4 4,232,344 + -2.6 4,232,400 + -2.0 4,232,400 + +0.3 4,232,400 + +0.8 4,232,400 + -2.6 4,232,400 + -0.2 4,232,400 + -0.1 4,232,401 - -3.4 4,232,401 - -1.4 4,232,401 - +2.6 4,232,492 - Psyr_3553 0.23 -0.2 4,232,492 - Psyr_3553 0.23 -2.6 4,232,596 + Psyr_3553 0.44 -0.8 4,232,597 - Psyr_3553 0.44 -0.8 4,232,597 - Psyr_3553 0.44 +1.5 4,232,795 + Psyr_3553 0.84 -1.6 4,232,795 + Psyr_3553 0.84 +1.6 4,232,795 + Psyr_3553 0.84 +0.5 4,232,795 + Psyr_3553 0.84 +0.8 4,232,795 + Psyr_3553 0.84 +1.7 4,232,795 + Psyr_3553 0.84 +0.6 4,232,796 - Psyr_3553 0.84 -0.3 4,232,801 + Psyr_3553 0.85 -0.4 4,232,801 + Psyr_3553 0.85 -1.6 4,232,801 + Psyr_3553 0.85 -0.1 4,232,802 - Psyr_3553 0.86 +1.1 4,232,802 - Psyr_3553 0.86 +0.2 4,232,827 + -1.2 4,232,828 - +1.0 4,232,858 - -1.4 4,232,870 + +0.8 4,232,916 - -0.6 4,232,916 - +1.6 4,232,916 - +0.6 4,232,916 - +0.4 4,232,986 - -1.6 4,233,050 - +2.3
Or see this region's nucleotide sequence