Experiment: apoplastic, chopping recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0437 and Psyr_0438 overlap by 26 nucleotides Psyr_0438 and Psyr_0439 overlap by 25 nucleotides Psyr_0439 and Psyr_0440 are separated by 309 nucleotides
Psyr_0437: Psyr_0437 - acyl carrier protein, putative, at 475,287 to 475,547
_0437
Psyr_0438: Psyr_0438 - Phospholipid/glycerol acyltransferase, at 475,522 to 476,334
_0438
Psyr_0439: Psyr_0439 - conserved hypothetical protein, at 476,310 to 477,029
_0439
Psyr_0440: Psyr_0440 - Cobyrinic acid a,c-diamide synthase, at 477,339 to 478,118
_0440
Position (kb) 476
477
478 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 475.460 kb on + strand, within Psyr_0437 at 475.460 kb on + strand, within Psyr_0437 at 475.523 kb on + strand at 475.523 kb on + strand at 475.523 kb on + strand at 475.524 kb on - strand at 475.571 kb on + strand at 475.571 kb on + strand at 475.571 kb on + strand at 475.571 kb on + strand at 475.571 kb on + strand at 475.572 kb on - strand at 475.572 kb on - strand at 475.572 kb on - strand at 475.583 kb on + strand at 475.621 kb on + strand, within Psyr_0438 at 475.645 kb on + strand, within Psyr_0438 at 475.645 kb on + strand, within Psyr_0438 at 475.646 kb on - strand, within Psyr_0438 at 475.646 kb on - strand, within Psyr_0438 at 475.646 kb on - strand, within Psyr_0438 at 475.920 kb on - strand, within Psyr_0438 at 475.920 kb on - strand, within Psyr_0438 at 476.093 kb on + strand, within Psyr_0438 at 476.093 kb on + strand, within Psyr_0438 at 476.093 kb on + strand, within Psyr_0438 at 476.093 kb on + strand, within Psyr_0438 at 476.093 kb on + strand, within Psyr_0438 at 476.093 kb on + strand, within Psyr_0438 at 476.094 kb on - strand, within Psyr_0438 at 476.094 kb on - strand, within Psyr_0438 at 476.094 kb on - strand, within Psyr_0438 at 476.094 kb on - strand, within Psyr_0438 at 476.094 kb on - strand, within Psyr_0438 at 476.288 kb on + strand at 476.288 kb on + strand at 476.288 kb on + strand at 476.288 kb on + strand at 476.291 kb on + strand at 476.291 kb on + strand at 476.291 kb on + strand at 476.291 kb on + strand at 476.292 kb on - strand at 476.527 kb on + strand, within Psyr_0439 at 476.527 kb on + strand, within Psyr_0439 at 476.528 kb on - strand, within Psyr_0439 at 476.528 kb on - strand, within Psyr_0439 at 476.614 kb on + strand, within Psyr_0439 at 476.615 kb on - strand, within Psyr_0439 at 476.692 kb on - strand, within Psyr_0439 at 476.692 kb on - strand, within Psyr_0439 at 476.692 kb on - strand, within Psyr_0439 at 477.066 kb on + strand at 477.067 kb on - strand at 477.123 kb on + strand at 477.141 kb on + strand at 477.141 kb on + strand at 477.141 kb on + strand at 477.142 kb on - strand at 477.145 kb on - strand at 477.157 kb on - strand at 477.160 kb on + strand at 477.161 kb on - strand at 477.182 kb on - strand at 477.182 kb on - strand at 477.187 kb on - strand at 477.256 kb on + strand at 477.256 kb on + strand at 477.257 kb on - strand at 477.257 kb on - strand at 477.257 kb on - strand at 477.257 kb on - strand at 477.257 kb on - strand at 477.284 kb on + strand at 477.285 kb on - strand at 477.475 kb on - strand, within Psyr_0440 at 477.579 kb on + strand, within Psyr_0440 at 477.579 kb on + strand, within Psyr_0440 at 477.579 kb on + strand, within Psyr_0440 at 477.580 kb on - strand, within Psyr_0440 at 477.708 kb on + strand, within Psyr_0440 at 477.717 kb on - strand, within Psyr_0440 at 477.720 kb on + strand, within Psyr_0440 at 477.720 kb on + strand, within Psyr_0440 at 477.720 kb on + strand, within Psyr_0440 at 477.721 kb on - strand, within Psyr_0440 at 477.721 kb on - strand, within Psyr_0440 at 477.721 kb on - strand, within Psyr_0440 at 477.984 kb on + strand, within Psyr_0440 at 477.984 kb on + strand, within Psyr_0440 at 477.984 kb on + strand, within Psyr_0440 at 477.984 kb on + strand, within Psyr_0440
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean remove 475,460 + Psyr_0437 0.66 +0.5 475,460 + Psyr_0437 0.66 +0.7 475,523 + +0.7 475,523 + -2.1 475,523 + -0.7 475,524 - -1.4 475,571 + +1.2 475,571 + +0.8 475,571 + +0.9 475,571 + +0.2 475,571 + -2.0 475,572 - +0.3 475,572 - -1.0 475,572 - -2.5 475,583 + +1.0 475,621 + Psyr_0438 0.12 -1.6 475,645 + Psyr_0438 0.15 -1.2 475,645 + Psyr_0438 0.15 -0.3 475,646 - Psyr_0438 0.15 +0.9 475,646 - Psyr_0438 0.15 -0.2 475,646 - Psyr_0438 0.15 +1.4 475,920 - Psyr_0438 0.49 -2.3 475,920 - Psyr_0438 0.49 +2.5 476,093 + Psyr_0438 0.70 +0.3 476,093 + Psyr_0438 0.70 +0.1 476,093 + Psyr_0438 0.70 +2.2 476,093 + Psyr_0438 0.70 +1.0 476,093 + Psyr_0438 0.70 +0.6 476,093 + Psyr_0438 0.70 -0.8 476,094 - Psyr_0438 0.70 -0.1 476,094 - Psyr_0438 0.70 -0.0 476,094 - Psyr_0438 0.70 +2.8 476,094 - Psyr_0438 0.70 +0.8 476,094 - Psyr_0438 0.70 +0.2 476,288 + -1.1 476,288 + +0.9 476,288 + +0.8 476,288 + -0.4 476,291 + -0.9 476,291 + -1.1 476,291 + -2.9 476,291 + -0.6 476,292 - -2.2 476,527 + Psyr_0439 0.30 +0.8 476,527 + Psyr_0439 0.30 +1.2 476,528 - Psyr_0439 0.30 +0.9 476,528 - Psyr_0439 0.30 -3.2 476,614 + Psyr_0439 0.42 +0.0 476,615 - Psyr_0439 0.42 -2.2 476,692 - Psyr_0439 0.53 -0.8 476,692 - Psyr_0439 0.53 +1.2 476,692 - Psyr_0439 0.53 -0.4 477,066 + -0.3 477,067 - +0.7 477,123 + -1.2 477,141 + +1.2 477,141 + -1.0 477,141 + -0.0 477,142 - -3.4 477,145 - +2.5 477,157 - +0.2 477,160 + -0.7 477,161 - -1.5 477,182 - +0.0 477,182 - +0.7 477,187 - +0.9 477,256 + -2.6 477,256 + +1.4 477,257 - +1.5 477,257 - -1.7 477,257 - +0.9 477,257 - -0.1 477,257 - -3.2 477,284 + +0.7 477,285 - -1.5 477,475 - Psyr_0440 0.17 +0.5 477,579 + Psyr_0440 0.31 -2.7 477,579 + Psyr_0440 0.31 +0.5 477,579 + Psyr_0440 0.31 +3.2 477,580 - Psyr_0440 0.31 -0.7 477,708 + Psyr_0440 0.47 +0.5 477,717 - Psyr_0440 0.48 +0.8 477,720 + Psyr_0440 0.49 -1.3 477,720 + Psyr_0440 0.49 -2.7 477,720 + Psyr_0440 0.49 -0.5 477,721 - Psyr_0440 0.49 +1.2 477,721 - Psyr_0440 0.49 -1.2 477,721 - Psyr_0440 0.49 -1.0 477,984 + Psyr_0440 0.83 +1.4 477,984 + Psyr_0440 0.83 +3.7 477,984 + Psyr_0440 0.83 +2.4 477,984 + Psyr_0440 0.83 -1.0
Or see this region's nucleotide sequence