Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4840

Experiment: nitrite 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4839 and PfGW456L13_4840 overlap by 8 nucleotidesPfGW456L13_4840 and PfGW456L13_4841 are separated by 247 nucleotides PfGW456L13_4839 - GTP-binding protein Era, at 5,406,743 to 5,407,645 _4839 PfGW456L13_4840 - Ribonuclease III (EC 3.1.26.3), at 5,407,638 to 5,408,264 _4840 PfGW456L13_4841 - Signal peptidase I (EC 3.4.21.89), at 5,408,512 to 5,409,366 _4841 Position (kb) 5407 5408 5409Strain fitness (log2 ratio) -1 0 1 2at 5406.659 kb on + strandat 5406.669 kb on + strandat 5406.669 kb on + strandat 5406.669 kb on + strandat 5406.669 kb on + strandat 5406.670 kb on - strandat 5406.670 kb on - strandat 5406.670 kb on - strandat 5406.741 kb on + strandat 5406.741 kb on + strandat 5406.741 kb on + strandat 5406.741 kb on + strandat 5406.744 kb on + strandat 5406.744 kb on + strandat 5406.744 kb on + strandat 5406.744 kb on + strandat 5406.744 kb on + strandat 5406.745 kb on - strandat 5406.745 kb on - strandat 5406.745 kb on - strandat 5406.745 kb on - strandat 5408.400 kb on - strandat 5408.430 kb on - strandat 5408.514 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 10 mM
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5,406,659 + -0.1
5,406,669 + +0.4
5,406,669 + +0.4
5,406,669 + -0.5
5,406,669 + -0.8
5,406,670 - +0.0
5,406,670 - -1.0
5,406,670 - +0.0
5,406,741 + +1.0
5,406,741 + -0.2
5,406,741 + +0.3
5,406,741 + -1.2
5,406,744 + +2.2
5,406,744 + +0.8
5,406,744 + -0.3
5,406,744 + -0.3
5,406,744 + -0.1
5,406,745 - -0.5
5,406,745 - +1.3
5,406,745 - -0.1
5,406,745 - -0.5
5,408,400 - +0.0
5,408,430 - -0.9
5,408,514 - +0.1

Or see this region's nucleotide sequence