Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3651

Experiment: nitrite 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 10 mM
4,109,659	+		PfGW456L13_3650	0.41	-0.1
4,109,660	-		PfGW456L13_3650	0.41	+0.3
4,109,661	+		PfGW456L13_3650	0.41	-1.0
4,109,699	+		PfGW456L13_3650	0.44	+0.8
4,109,699	+				+1.8
4,109,699	+		PfGW456L13_3650	0.44	+0.1
4,109,699	+		PfGW456L13_3650	0.44	-0.3
4,109,699	+		PfGW456L13_3650	0.44	+0.4
4,109,699	+		PfGW456L13_3650	0.44	-2.1
4,109,699	+		PfGW456L13_3650	0.44	-0.3
4,109,699	+		PfGW456L13_3650	0.44	-0.5
4,109,699	+		PfGW456L13_3650	0.44	+0.1
4,109,700	-		PfGW456L13_3650	0.44	+0.8
4,109,700	-		PfGW456L13_3650	0.44	-0.4
4,109,700	-		PfGW456L13_3650	0.44	+0.2
4,109,815	+		PfGW456L13_3650	0.54	-0.6
4,109,816	-		PfGW456L13_3650	0.54	+0.8
4,109,881	+		PfGW456L13_3650	0.59	+0.7
4,109,882	-		PfGW456L13_3650	0.59	+0.8
4,109,916	+		PfGW456L13_3650	0.62	-0.9
4,109,916	+		PfGW456L13_3650	0.62	-2.2
4,109,916	+		PfGW456L13_3650	0.62	-0.8
4,109,917	-		PfGW456L13_3650	0.62	+0.1
4,109,917	-		PfGW456L13_3650	0.62	+0.8
4,110,053	+		PfGW456L13_3650	0.73	+0.1
4,110,053	+		PfGW456L13_3650	0.73	-1.2
4,110,053	+		PfGW456L13_3650	0.73	-0.5
4,110,054	-		PfGW456L13_3650	0.73	+0.5
4,110,054	-				-0.2
4,110,054	-		PfGW456L13_3650	0.73	-0.4
4,110,054	-		PfGW456L13_3650	0.73	+0.8
4,110,054	-		PfGW456L13_3650	0.73	-0.5
4,110,054	-		PfGW456L13_3650	0.73	+0.2
4,110,054	-		PfGW456L13_3650	0.73	-0.7
4,110,107	-		PfGW456L13_3650	0.78	-1.2
4,110,107	-		PfGW456L13_3650	0.78	-0.7
4,110,180	-		PfGW456L13_3650	0.84	-1.0
4,110,221	+		PfGW456L13_3650	0.87	-0.5
4,110,221	+		PfGW456L13_3650	0.87	+0.0
4,110,222	-		PfGW456L13_3650	0.87	-0.4
4,110,222	-		PfGW456L13_3650	0.87	+0.5
4,110,222	-		PfGW456L13_3650	0.87	-0.6
4,110,222	-		PfGW456L13_3650	0.87	+0.5
4,110,240	-		PfGW456L13_3650	0.89	+0.0
4,110,272	+				-0.6
4,110,272	+				-0.0
4,110,273	-				+0.6
4,110,293	+				+0.2
4,110,331	+				-1.1
4,110,331	+				-0.2
4,110,360	+				+1.6
4,110,360	+				-0.5
4,110,360	+				-0.3
4,110,476	-				+0.5
4,110,476	-				-0.5
4,110,476	-				+0.8
4,110,476	-				-0.7
4,110,476	-				-0.2
4,110,482	+				-1.8
4,110,483	-				-0.6
4,110,484	+				-0.6
4,110,484	+				-0.1
4,110,484	+				+0.0
4,110,484	+				+0.9
4,110,484	+				+0.9
4,110,484	+				-0.2
4,110,484	+				-0.6
4,110,485	-				-0.7
4,110,485	-				-1.8
4,110,503	+				-0.1
4,110,504	-				+0.1
4,110,504	-				-0.2
4,110,530	-				-0.2
4,110,565	-				-2.7
4,110,599	+				-0.5
4,110,599	+				-2.6
4,110,599	+				+0.1
4,110,605	+				+0.3
4,110,605	+				-0.1
4,110,606	-				-1.8
4,110,606	-				-0.1
4,110,606	-				+0.2
4,110,607	+				+0.4
4,110,607	+				-1.1
4,110,607	+				-0.2
4,110,607	+				-0.4
4,110,607	+				-0.9
4,110,608	-				+0.5
4,110,608	-				-1.6
4,110,608	-				-0.5
4,110,608	-				+1.3
4,110,608	-				+0.5
4,110,608	-				+0.8
4,110,637	+				-0.8
4,110,637	+				+0.2
4,110,638	-				-0.9
4,110,740	+		PfGW456L13_3651	0.11	-0.5
4,110,740	+		PfGW456L13_3651	0.11	+0.5
4,110,740	+		PfGW456L13_3651	0.11	-0.3
4,110,740	+		PfGW456L13_3651	0.11	+1.5
4,110,740	+		PfGW456L13_3651	0.11	-1.2
4,110,740	+		PfGW456L13_3651	0.11	+0.2
4,110,740	+		PfGW456L13_3651	0.11	+0.1
4,110,741	-		PfGW456L13_3651	0.11	+0.2
4,110,741	-		PfGW456L13_3651	0.11	+1.2
4,110,836	-		PfGW456L13_3651	0.21	-0.1
4,110,889	-		PfGW456L13_3651	0.27	+0.2
4,110,902	-		PfGW456L13_3651	0.28	+0.3
4,110,952	+		PfGW456L13_3651	0.33	-1.0
4,110,953	-		PfGW456L13_3651	0.33	+2.0
4,110,954	+		PfGW456L13_3651	0.34	-0.4
4,110,954	+		PfGW456L13_3651	0.34	+1.6
4,110,954	+		PfGW456L13_3651	0.34	+0.0
4,110,954	+		PfGW456L13_3651	0.34	+0.9
4,110,954	+		PfGW456L13_3651	0.34	+1.5
4,110,954	+		PfGW456L13_3651	0.34	+0.1
4,110,955	-		PfGW456L13_3651	0.34	+0.4
4,110,955	-		PfGW456L13_3651	0.34	-1.2
4,110,955	-		PfGW456L13_3651	0.34	+1.2
4,110,955	-		PfGW456L13_3651	0.34	-0.1
4,110,955	-		PfGW456L13_3651	0.34	-0.2
4,110,955	-		PfGW456L13_3651	0.34	-0.2
4,111,047	+		PfGW456L13_3651	0.43	-0.8
4,111,047	+		PfGW456L13_3651	0.43	-0.4
4,111,047	+		PfGW456L13_3651	0.43	-0.0
4,111,047	+		PfGW456L13_3651	0.43	-1.4
4,111,048	-		PfGW456L13_3651	0.44	+0.2
4,111,048	-		PfGW456L13_3651	0.44	+0.4
4,111,048	-		PfGW456L13_3651	0.44	-0.5
4,111,048	-		PfGW456L13_3651	0.44	-0.2
4,111,048	-		PfGW456L13_3651	0.44	-0.8
4,111,048	-		PfGW456L13_3651	0.44	+0.0
4,111,048	-		PfGW456L13_3651	0.44	-0.7
4,111,048	-		PfGW456L13_3651	0.44	+1.2
4,111,081	+		PfGW456L13_3651	0.47	-1.1
4,111,081	+		PfGW456L13_3651	0.47	-1.2
4,111,082	-		PfGW456L13_3651	0.47	+0.3
4,111,082	-		PfGW456L13_3651	0.47	+0.2
4,111,082	-		PfGW456L13_3651	0.47	-0.2
4,111,082	-		PfGW456L13_3651	0.47	-0.4
4,111,082	-		PfGW456L13_3651	0.47	+0.2
4,111,113	+		PfGW456L13_3651	0.50	+0.0
4,111,113	+		PfGW456L13_3651	0.50	+1.3
4,111,113	+		PfGW456L13_3651	0.50	-0.1
4,111,114	-		PfGW456L13_3651	0.51	-1.5
4,111,114	-		PfGW456L13_3651	0.51	+0.8
4,111,190	+		PfGW456L13_3651	0.59	-0.4
4,111,191	-		PfGW456L13_3651	0.59	+0.4
4,111,191	-		PfGW456L13_3651	0.59	-0.5
4,111,191	-		PfGW456L13_3651	0.59	-1.4
4,111,239	+		PfGW456L13_3651	0.64	-0.7
4,111,306	+		PfGW456L13_3651	0.71	-0.2
4,111,306	+		PfGW456L13_3651	0.71	+0.8
4,111,306	+		PfGW456L13_3651	0.71	+0.6
4,111,306	+		PfGW456L13_3651	0.71	-0.2
4,111,306	+		PfGW456L13_3651	0.71	-0.5
4,111,307	-		PfGW456L13_3651	0.71	+0.2
4,111,307	-		PfGW456L13_3651	0.71	-0.8
4,111,307	-		PfGW456L13_3651	0.71	-0.3
4,111,307	-		PfGW456L13_3651	0.71	+1.5
4,111,311	+		PfGW456L13_3651	0.71	-0.2
4,111,311	+		PfGW456L13_3651	0.71	+0.4
4,111,432	-		PfGW456L13_3651	0.84	+0.6
4,111,437	+		PfGW456L13_3651	0.85	-0.4
4,111,437	+		PfGW456L13_3651	0.85	-0.1
4,111,437	+		PfGW456L13_3651	0.85	+0.3
4,111,437	+		PfGW456L13_3651	0.85	-0.2
4,111,437	+		PfGW456L13_3651	0.85	-0.1
4,111,578	-				-0.5
4,111,630	-				+0.8
4,111,646	+				-0.3
4,111,647	-				-0.0
4,111,652	+				+0.2
4,111,652	+				+0.1
4,111,652	+				-0.7
4,111,652	+				-0.4
4,111,652	+				-0.2
4,111,652	+				-0.2
4,111,652	+				+0.6
4,111,652	+				-0.7
4,111,653	-				-0.1
4,111,653	-				+0.3
4,111,653	-				+0.5
4,111,653	-				+0.9
4,111,653	-				-0.7
4,111,653	-				-0.2
4,111,653	-				+1.9
4,111,672	-				-0.4
4,111,682	+				-1.1
4,111,682	+				-0.3
4,111,682	+				-0.1
4,111,682	+				-0.5
4,111,682	+				+0.4
4,111,683	-				-0.8
4,111,683	-				-0.2
4,111,683	-				+0.0
4,111,683	-				-1.2
4,111,683	-				+0.8
4,111,785	-				+0.9
4,111,785	-				-1.6
4,111,798	+				+0.1
4,111,835	-				+0.5
4,111,835	-				-1.6
4,111,835	-				+0.7
4,111,870	+		PfGW456L13_3652	0.12	+1.8
4,111,871	-		PfGW456L13_3652	0.12	-0.0
4,111,871	-		PfGW456L13_3652	0.12	+0.3
4,111,958	-		PfGW456L13_3652	0.18	+0.3
4,112,005	+		PfGW456L13_3652	0.21	-0.2
4,112,005	+		PfGW456L13_3652	0.21	-1.7
4,112,005	+		PfGW456L13_3652	0.21	-0.5
4,112,006	-		PfGW456L13_3652	0.21	-0.5
4,112,052	+		PfGW456L13_3652	0.24	+0.2
4,112,052	+		PfGW456L13_3652	0.24	+0.3
4,112,052	+		PfGW456L13_3652	0.24	+0.6
4,112,052	+		PfGW456L13_3652	0.24	-2.9
4,112,053	-		PfGW456L13_3652	0.25	+1.3
4,112,053	-		PfGW456L13_3652	0.25	+0.0
4,112,053	-		PfGW456L13_3652	0.25	+0.0
4,112,053	-		PfGW456L13_3652	0.25	+0.7
4,112,053	-		PfGW456L13_3652	0.25	-0.1
4,112,053	-		PfGW456L13_3652	0.25	+1.2
4,112,053	-		PfGW456L13_3652	0.25	-2.1
4,112,053	-		PfGW456L13_3652	0.25	+0.1
4,112,090	+		PfGW456L13_3652	0.27	+0.7
4,112,090	+		PfGW456L13_3652	0.27	+0.5
4,112,090	+		PfGW456L13_3652	0.27	-0.4
4,112,091	-		PfGW456L13_3652	0.27	+1.1
4,112,091	-		PfGW456L13_3652	0.27	+0.1
4,112,091	-		PfGW456L13_3652	0.27	+0.1
4,112,136	+		PfGW456L13_3652	0.30	+0.2
4,112,136	+		PfGW456L13_3652	0.30	+0.2
4,112,136	+		PfGW456L13_3652	0.30	-0.2
4,112,137	-		PfGW456L13_3652	0.30	+0.2
4,112,137	-		PfGW456L13_3652	0.30	-0.2
4,112,137	-		PfGW456L13_3652	0.30	+0.6
4,112,140	+		PfGW456L13_3652	0.31	+1.5
4,112,140	+		PfGW456L13_3652	0.31	-0.5
4,112,141	-		PfGW456L13_3652	0.31	+0.0
4,112,141	-		PfGW456L13_3652	0.31	-0.0
4,112,141	-		PfGW456L13_3652	0.31	-0.2
4,112,141	-		PfGW456L13_3652	0.31	-0.2
4,112,141	-		PfGW456L13_3652	0.31	+0.2
4,112,216	-		PfGW456L13_3652	0.36	-1.2
4,112,216	-		PfGW456L13_3652	0.36	-0.2
4,112,264	+		PfGW456L13_3652	0.39	-0.3
4,112,367	+		PfGW456L13_3652	0.46	+0.8
4,112,367	+		PfGW456L13_3652	0.46	-0.1
4,112,368	-		PfGW456L13_3652	0.46	+0.2
4,112,368	-		PfGW456L13_3652	0.46	-0.7
4,112,368	-		PfGW456L13_3652	0.46	+1.2
4,112,368	-		PfGW456L13_3652	0.46	-0.2
4,112,368	-		PfGW456L13_3652	0.46	+0.2
4,112,368	-		PfGW456L13_3652	0.46	+0.1
4,112,368	-		PfGW456L13_3652	0.46	-1.0
4,112,386	+		PfGW456L13_3652	0.48	+0.2
4,112,386	+		PfGW456L13_3652	0.48	+2.3
4,112,386	+		PfGW456L13_3652	0.48	-0.1
4,112,413	+		PfGW456L13_3652	0.49	+0.4
4,112,414	-		PfGW456L13_3652	0.49	-0.2
4,112,475	-		PfGW456L13_3652	0.54	+1.0
4,112,475	-		PfGW456L13_3652	0.54	+0.1
4,112,485	+		PfGW456L13_3652	0.54	-0.8
4,112,486	-		PfGW456L13_3652	0.54	-0.5
4,112,494	+		PfGW456L13_3652	0.55	+0.9
4,112,494	+		PfGW456L13_3652	0.55	+0.9
4,112,495	-		PfGW456L13_3652	0.55	-0.4
4,112,555	+				+1.5
4,112,555	+		PfGW456L13_3652	0.59	-0.7
4,112,556	-		PfGW456L13_3652	0.59	-0.2