Strain Fitness in Pseudomonas simiae WCS417 around PS417_25925

Experiment: Gly-Glu (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_25920 and PS417_25925 are separated by 300 nucleotidesPS417_25925 and PS417_25930 are separated by 11 nucleotidesPS417_25930 and PS417_25935 overlap by 4 nucleotides PS417_25920: PS417_25920 - pyrroloquinoline quinone biosynthesis protein PqqF, at 5,598,723 to 5,601,065 _25920 PS417_25925: PS417_25925 - pyrroloquinoline quinone biosynthesis protein PqqB, at 5,601,366 to 5,602,277 _25925 PS417_25930: PS417_25930 - pyrroloquinoline quinone biosynthesis protein PqqC, at 5,602,289 to 5,603,041 _25930 PS417_25935: PS417_25935 - pyrroloquinoline quinone biosynthesis protein PqqD, at 5,603,038 to 5,603,313 _25935 Position (kb) 5601 5602 5603Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 5600.519 kb on - strand, within PS417_25920at 5600.632 kb on - strand, within PS417_25920at 5600.692 kb on + strand, within PS417_25920at 5601.174 kb on + strandat 5601.174 kb on + strandat 5601.174 kb on + strandat 5601.174 kb on + strandat 5601.174 kb on + strandat 5601.174 kb on + strandat 5601.175 kb on - strandat 5601.175 kb on - strandat 5601.175 kb on - strandat 5601.175 kb on - strandat 5601.175 kb on - strandat 5601.176 kb on + strandat 5601.176 kb on + strandat 5601.176 kb on + strandat 5601.176 kb on + strandat 5601.176 kb on + strandat 5601.176 kb on + strandat 5601.176 kb on + strandat 5601.176 kb on + strandat 5601.176 kb on + strandat 5601.176 kb on + strandat 5601.176 kb on + strandat 5601.176 kb on + strandat 5601.176 kb on + strandat 5601.177 kb on - strandat 5601.177 kb on - strandat 5601.177 kb on - strandat 5601.177 kb on - strandat 5601.177 kb on - strandat 5601.177 kb on - strandat 5601.177 kb on - strandat 5601.177 kb on - strandat 5601.177 kb on - strandat 5601.180 kb on + strandat 5601.180 kb on + strandat 5601.180 kb on + strandat 5601.181 kb on - strandat 5601.181 kb on - strandat 5601.181 kb on - strandat 5601.181 kb on - strandat 5601.181 kb on - strandat 5601.183 kb on + strandat 5601.184 kb on - strandat 5601.184 kb on - strandat 5601.190 kb on + strandat 5601.194 kb on - strandat 5601.213 kb on - strandat 5601.219 kb on - strandat 5601.219 kb on - strandat 5601.219 kb on - strandat 5601.224 kb on + strandat 5601.225 kb on - strandat 5601.247 kb on - strandat 5601.282 kb on + strandat 5601.282 kb on + strandat 5601.282 kb on + strandat 5601.283 kb on - strandat 5601.313 kb on - strandat 5601.313 kb on - strandat 5601.382 kb on + strandat 5601.382 kb on + strandat 5602.166 kb on + strand, within PS417_25925at 5602.166 kb on + strand, within PS417_25925at 5602.352 kb on + strandat 5602.352 kb on + strandat 5602.353 kb on - strandat 5602.353 kb on - strandat 5602.353 kb on - strandat 5602.357 kb on + strandat 5602.358 kb on - strandat 5602.385 kb on + strand, within PS417_25930at 5602.385 kb on + strand, within PS417_25930at 5602.386 kb on - strand, within PS417_25930at 5602.386 kb on - strand, within PS417_25930at 5602.386 kb on - strand, within PS417_25930at 5602.439 kb on + strand, within PS417_25930at 5602.440 kb on - strand, within PS417_25930at 5602.443 kb on - strand, within PS417_25930at 5602.668 kb on - strand, within PS417_25930at 5602.808 kb on + strand, within PS417_25930at 5602.808 kb on + strand, within PS417_25930at 5602.808 kb on + strand, within PS417_25930at 5602.809 kb on - strand, within PS417_25930at 5602.809 kb on - strand, within PS417_25930at 5602.877 kb on + strand, within PS417_25930at 5602.877 kb on + strand, within PS417_25930at 5602.878 kb on - strand, within PS417_25930at 5602.991 kb on + strandat 5603.024 kb on - strandat 5603.037 kb on + strandat 5603.038 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
remove
5,600,519 - PS417_25920 0.77 -2.8
5,600,632 - PS417_25920 0.81 +0.6
5,600,692 + PS417_25920 0.84 -2.8
5,601,174 + +0.3
5,601,174 + +0.3
5,601,174 + +0.1
5,601,174 + +1.3
5,601,174 + +0.0
5,601,174 + +0.5
5,601,175 - -1.0
5,601,175 - -0.0
5,601,175 - -1.4
5,601,175 - -1.5
5,601,175 - -0.3
5,601,176 + +0.6
5,601,176 + +0.7
5,601,176 + +0.4
5,601,176 + -0.4
5,601,176 + +0.7
5,601,176 + -0.6
5,601,176 + -1.0
5,601,176 + +0.1
5,601,176 + -1.1
5,601,176 + +2.6
5,601,176 + +0.9
5,601,176 + -0.4
5,601,176 + +0.4
5,601,177 - +0.8
5,601,177 - -0.3
5,601,177 - -0.1
5,601,177 - -0.8
5,601,177 - +2.6
5,601,177 - -0.4
5,601,177 - -0.6
5,601,177 - -0.6
5,601,177 - -0.4
5,601,180 + -0.4
5,601,180 + +0.0
5,601,180 + -1.0
5,601,181 - -0.0
5,601,181 - +0.1
5,601,181 - -0.5
5,601,181 - -0.3
5,601,181 - +0.6
5,601,183 + +0.3
5,601,184 - -0.1
5,601,184 - -1.6
5,601,190 + -0.0
5,601,194 - -2.5
5,601,213 - -4.0
5,601,219 - -1.5
5,601,219 - -0.4
5,601,219 - -1.1
5,601,224 + -0.0
5,601,225 - -1.0
5,601,247 - -1.8
5,601,282 + +0.8
5,601,282 + +0.5
5,601,282 + +0.6
5,601,283 - -2.9
5,601,313 - -1.5
5,601,313 - -1.0
5,601,382 + -2.9
5,601,382 + -3.1
5,602,166 + PS417_25925 0.88 -1.4
5,602,166 + PS417_25925 0.88 -0.6
5,602,352 + -4.8
5,602,352 + -3.5
5,602,353 - -2.5
5,602,353 - -2.6
5,602,353 - -3.8
5,602,357 + -1.9
5,602,358 - -3.8
5,602,385 + PS417_25930 0.13 -2.6
5,602,385 + PS417_25930 0.13 -4.3
5,602,386 - PS417_25930 0.13 -2.0
5,602,386 - PS417_25930 0.13 -1.4
5,602,386 - PS417_25930 0.13 -0.0
5,602,439 + PS417_25930 0.20 -1.9
5,602,440 - PS417_25930 0.20 +0.3
5,602,443 - PS417_25930 0.20 -3.4
5,602,668 - PS417_25930 0.50 -1.8
5,602,808 + PS417_25930 0.69 -0.2
5,602,808 + PS417_25930 0.69 -4.8
5,602,808 + PS417_25930 0.69 -2.8
5,602,809 - PS417_25930 0.69 -5.1
5,602,809 - PS417_25930 0.69 -2.5
5,602,877 + PS417_25930 0.78 -1.8
5,602,877 + PS417_25930 0.78 -4.0
5,602,878 - PS417_25930 0.78 -0.0
5,602,991 + -1.3
5,603,024 - -2.9
5,603,037 + +1.3
5,603,038 - -3.3

Or see this region's nucleotide sequence