Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25920 and PS417_25925 are separated by 300 nucleotides PS417_25925 and PS417_25930 are separated by 11 nucleotides PS417_25930 and PS417_25935 overlap by 4 nucleotides
PS417_25920: PS417_25920 - pyrroloquinoline quinone biosynthesis protein PqqF, at 5,598,723 to 5,601,065
_25920
PS417_25925: PS417_25925 - pyrroloquinoline quinone biosynthesis protein PqqB, at 5,601,366 to 5,602,277
_25925
PS417_25930: PS417_25930 - pyrroloquinoline quinone biosynthesis protein PqqC, at 5,602,289 to 5,603,041
_25930
PS417_25935: PS417_25935 - pyrroloquinoline quinone biosynthesis protein PqqD, at 5,603,038 to 5,603,313
_25935
Position (kb)
5601
5602
5603 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 5600.519 kb on - strand, within PS417_25920 at 5600.632 kb on - strand, within PS417_25920 at 5600.692 kb on + strand, within PS417_25920 at 5601.174 kb on + strand at 5601.174 kb on + strand at 5601.174 kb on + strand at 5601.174 kb on + strand at 5601.174 kb on + strand at 5601.174 kb on + strand at 5601.175 kb on - strand at 5601.175 kb on - strand at 5601.175 kb on - strand at 5601.175 kb on - strand at 5601.175 kb on - strand at 5601.176 kb on + strand at 5601.176 kb on + strand at 5601.176 kb on + strand at 5601.176 kb on + strand at 5601.176 kb on + strand at 5601.176 kb on + strand at 5601.176 kb on + strand at 5601.176 kb on + strand at 5601.176 kb on + strand at 5601.176 kb on + strand at 5601.176 kb on + strand at 5601.176 kb on + strand at 5601.176 kb on + strand at 5601.177 kb on - strand at 5601.177 kb on - strand at 5601.177 kb on - strand at 5601.177 kb on - strand at 5601.177 kb on - strand at 5601.177 kb on - strand at 5601.177 kb on - strand at 5601.177 kb on - strand at 5601.177 kb on - strand at 5601.180 kb on + strand at 5601.180 kb on + strand at 5601.180 kb on + strand at 5601.181 kb on - strand at 5601.181 kb on - strand at 5601.181 kb on - strand at 5601.181 kb on - strand at 5601.181 kb on - strand at 5601.183 kb on + strand at 5601.184 kb on - strand at 5601.184 kb on - strand at 5601.190 kb on + strand at 5601.194 kb on - strand at 5601.213 kb on - strand at 5601.219 kb on - strand at 5601.219 kb on - strand at 5601.219 kb on - strand at 5601.224 kb on + strand at 5601.225 kb on - strand at 5601.247 kb on - strand at 5601.282 kb on + strand at 5601.282 kb on + strand at 5601.282 kb on + strand at 5601.283 kb on - strand at 5601.313 kb on - strand at 5601.313 kb on - strand at 5601.382 kb on + strand at 5601.382 kb on + strand at 5602.166 kb on + strand, within PS417_25925 at 5602.166 kb on + strand, within PS417_25925 at 5602.352 kb on + strand at 5602.352 kb on + strand at 5602.353 kb on - strand at 5602.353 kb on - strand at 5602.353 kb on - strand at 5602.357 kb on + strand at 5602.358 kb on - strand at 5602.385 kb on + strand, within PS417_25930 at 5602.385 kb on + strand, within PS417_25930 at 5602.386 kb on - strand, within PS417_25930 at 5602.386 kb on - strand, within PS417_25930 at 5602.386 kb on - strand, within PS417_25930 at 5602.439 kb on + strand, within PS417_25930 at 5602.440 kb on - strand, within PS417_25930 at 5602.443 kb on - strand, within PS417_25930 at 5602.668 kb on - strand, within PS417_25930 at 5602.808 kb on + strand, within PS417_25930 at 5602.808 kb on + strand, within PS417_25930 at 5602.808 kb on + strand, within PS417_25930 at 5602.809 kb on - strand, within PS417_25930 at 5602.809 kb on - strand, within PS417_25930 at 5602.877 kb on + strand, within PS417_25930 at 5602.877 kb on + strand, within PS417_25930 at 5602.878 kb on - strand, within PS417_25930 at 5602.991 kb on + strand at 5603.024 kb on - strand at 5603.037 kb on + strand at 5603.038 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 5,600,519 - PS417_25920 0.77 -2.8 5,600,632 - PS417_25920 0.81 +0.6 5,600,692 + PS417_25920 0.84 -2.8 5,601,174 + +0.3 5,601,174 + +0.3 5,601,174 + +0.1 5,601,174 + +1.3 5,601,174 + +0.0 5,601,174 + +0.5 5,601,175 - -1.0 5,601,175 - -0.0 5,601,175 - -1.4 5,601,175 - -1.5 5,601,175 - -0.3 5,601,176 + +0.6 5,601,176 + +0.7 5,601,176 + +0.4 5,601,176 + -0.4 5,601,176 + +0.7 5,601,176 + -0.6 5,601,176 + -1.0 5,601,176 + +0.1 5,601,176 + -1.1 5,601,176 + +2.6 5,601,176 + +0.9 5,601,176 + -0.4 5,601,176 + +0.4 5,601,177 - +0.8 5,601,177 - -0.3 5,601,177 - -0.1 5,601,177 - -0.8 5,601,177 - +2.6 5,601,177 - -0.4 5,601,177 - -0.6 5,601,177 - -0.6 5,601,177 - -0.4 5,601,180 + -0.4 5,601,180 + +0.0 5,601,180 + -1.0 5,601,181 - -0.0 5,601,181 - +0.1 5,601,181 - -0.5 5,601,181 - -0.3 5,601,181 - +0.6 5,601,183 + +0.3 5,601,184 - -0.1 5,601,184 - -1.6 5,601,190 + -0.0 5,601,194 - -2.5 5,601,213 - -4.0 5,601,219 - -1.5 5,601,219 - -0.4 5,601,219 - -1.1 5,601,224 + -0.0 5,601,225 - -1.0 5,601,247 - -1.8 5,601,282 + +0.8 5,601,282 + +0.5 5,601,282 + +0.6 5,601,283 - -2.9 5,601,313 - -1.5 5,601,313 - -1.0 5,601,382 + -2.9 5,601,382 + -3.1 5,602,166 + PS417_25925 0.88 -1.4 5,602,166 + PS417_25925 0.88 -0.6 5,602,352 + -4.8 5,602,352 + -3.5 5,602,353 - -2.5 5,602,353 - -2.6 5,602,353 - -3.8 5,602,357 + -1.9 5,602,358 - -3.8 5,602,385 + PS417_25930 0.13 -2.6 5,602,385 + PS417_25930 0.13 -4.3 5,602,386 - PS417_25930 0.13 -2.0 5,602,386 - PS417_25930 0.13 -1.4 5,602,386 - PS417_25930 0.13 -0.0 5,602,439 + PS417_25930 0.20 -1.9 5,602,440 - PS417_25930 0.20 +0.3 5,602,443 - PS417_25930 0.20 -3.4 5,602,668 - PS417_25930 0.50 -1.8 5,602,808 + PS417_25930 0.69 -0.2 5,602,808 + PS417_25930 0.69 -4.8 5,602,808 + PS417_25930 0.69 -2.8 5,602,809 - PS417_25930 0.69 -5.1 5,602,809 - PS417_25930 0.69 -2.5 5,602,877 + PS417_25930 0.78 -1.8 5,602,877 + PS417_25930 0.78 -4.0 5,602,878 - PS417_25930 0.78 -0.0 5,602,991 + -1.3 5,603,024 - -2.9 5,603,037 + +1.3 5,603,038 - -3.3
Or see this region's nucleotide sequence