Strain Fitness in Pseudomonas simiae WCS417 around PS417_24085

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24075 and PS417_24080 are separated by 98 nucleotidesPS417_24080 and PS417_24085 are separated by 63 nucleotidesPS417_24085 and PS417_24090 overlap by 8 nucleotidesPS417_24090 and PS417_24095 are separated by 168 nucleotides PS417_24075: PS417_24075 - Fur family transcriptional regulator, at 5,214,522 to 5,214,926 _24075 PS417_24080: PS417_24080 - membrane protein, at 5,215,025 to 5,215,552 _24080 PS417_24085: PS417_24085 - protein RnfH, at 5,215,616 to 5,215,918 _24085 PS417_24090: PS417_24090 - ribosome association toxin RatA, at 5,215,911 to 5,216,345 _24090 PS417_24095: PS417_24095 - SsrA-binding protein, at 5,216,514 to 5,216,996 _24095 Position (kb) 5215 5216Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5215.550 kb on + strandat 5215.617 kb on + strandat 5215.618 kb on - strandat 5215.618 kb on - strandat 5215.698 kb on + strand, within PS417_24085at 5215.751 kb on + strand, within PS417_24085at 5215.751 kb on + strand, within PS417_24085at 5215.896 kb on + strandat 5215.896 kb on + strandat 5215.896 kb on + strandat 5215.896 kb on + strandat 5215.897 kb on - strandat 5215.897 kb on - strandat 5215.897 kb on - strandat 5216.499 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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5,215,550 + -0.4
5,215,617 + -0.7
5,215,618 - -0.1
5,215,618 - +3.0
5,215,698 + PS417_24085 0.27 -1.2
5,215,751 + PS417_24085 0.45 -1.0
5,215,751 + PS417_24085 0.45 -0.4
5,215,896 + +0.6
5,215,896 + -0.0
5,215,896 + -1.7
5,215,896 + +2.4
5,215,897 - -1.0
5,215,897 - -1.1
5,215,897 - -1.8
5,216,499 + +0.9

Or see this region's nucleotide sequence