Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24070 and PS417_24075 are separated by 86 nucleotides PS417_24075 and PS417_24080 are separated by 98 nucleotides PS417_24080 and PS417_24085 are separated by 63 nucleotides PS417_24085 and PS417_24090 overlap by 8 nucleotides PS417_24090 and PS417_24095 are separated by 168 nucleotides
PS417_24070: PS417_24070 - recombination and repair protein, at 5,212,762 to 5,214,435
_24070
PS417_24075: PS417_24075 - Fur family transcriptional regulator, at 5,214,522 to 5,214,926
_24075
PS417_24080: PS417_24080 - membrane protein, at 5,215,025 to 5,215,552
_24080
PS417_24085: PS417_24085 - protein RnfH, at 5,215,616 to 5,215,918
_24085
PS417_24090: PS417_24090 - ribosome association toxin RatA, at 5,215,911 to 5,216,345
_24090
PS417_24095: PS417_24095 - SsrA-binding protein, at 5,216,514 to 5,216,996
_24095
Position (kb) 5215
5216 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5214.102 kb on + strand, within PS417_24070 at 5214.102 kb on + strand, within PS417_24070 at 5214.103 kb on - strand, within PS417_24070 at 5214.210 kb on + strand, within PS417_24070 at 5214.210 kb on + strand, within PS417_24070 at 5214.210 kb on + strand, within PS417_24070 at 5214.211 kb on - strand, within PS417_24070 at 5214.221 kb on + strand, within PS417_24070 at 5214.221 kb on + strand, within PS417_24070 at 5214.222 kb on - strand, within PS417_24070 at 5214.443 kb on - strand at 5214.443 kb on - strand at 5214.454 kb on + strand at 5214.455 kb on - strand at 5214.456 kb on + strand at 5214.456 kb on + strand at 5214.456 kb on + strand at 5214.457 kb on - strand at 5214.457 kb on - strand at 5214.477 kb on + strand at 5214.478 kb on - strand at 5215.550 kb on + strand at 5215.617 kb on + strand at 5215.618 kb on - strand at 5215.618 kb on - strand at 5215.698 kb on + strand, within PS417_24085 at 5215.751 kb on + strand, within PS417_24085 at 5215.751 kb on + strand, within PS417_24085 at 5215.896 kb on + strand at 5215.896 kb on + strand at 5215.896 kb on + strand at 5215.896 kb on + strand at 5215.897 kb on - strand at 5215.897 kb on - strand at 5215.897 kb on - strand at 5216.499 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 5,214,102 + PS417_24070 0.80 -1.7 5,214,102 + PS417_24070 0.80 +2.4 5,214,103 - PS417_24070 0.80 +0.3 5,214,210 + PS417_24070 0.86 +0.0 5,214,210 + PS417_24070 0.86 +1.2 5,214,210 + PS417_24070 0.86 +0.0 5,214,211 - PS417_24070 0.87 +0.0 5,214,221 + PS417_24070 0.87 +1.5 5,214,221 + PS417_24070 0.87 +0.0 5,214,222 - PS417_24070 0.87 +0.5 5,214,443 - -0.3 5,214,443 - +0.1 5,214,454 + +0.5 5,214,455 - -0.4 5,214,456 + +0.4 5,214,456 + +0.4 5,214,456 + +1.4 5,214,457 - -0.8 5,214,457 - -0.3 5,214,477 + +0.1 5,214,478 - -0.2 5,215,550 + -0.4 5,215,617 + -0.7 5,215,618 - -0.1 5,215,618 - +3.0 5,215,698 + PS417_24085 0.27 -1.2 5,215,751 + PS417_24085 0.45 -1.0 5,215,751 + PS417_24085 0.45 -0.4 5,215,896 + +0.6 5,215,896 + -0.0 5,215,896 + -1.7 5,215,896 + +2.4 5,215,897 - -1.0 5,215,897 - -1.1 5,215,897 - -1.8 5,216,499 + +0.9
Or see this region's nucleotide sequence