Strain Fitness in Pseudomonas simiae WCS417 around PS417_20635

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20620 and PS417_20625 overlap by 4 nucleotidesPS417_20625 and PS417_20630 are separated by 16 nucleotidesPS417_20630 and PS417_20635 are separated by 35 nucleotidesPS417_20635 and PS417_20640 overlap by 11 nucleotides PS417_20620: PS417_20620 - glycosyl transferase family 2, at 4,481,872 to 4,482,870 _20620 PS417_20625: PS417_20625 - hypothetical protein, at 4,482,867 to 4,483,205 _20625 PS417_20630: PS417_20630 - adenylylsulfate kinase, at 4,483,222 to 4,483,815 _20630 PS417_20635: PS417_20635 - ABC transporter ATP-binding protein, at 4,483,851 to 4,485,215 _20635 PS417_20640: PS417_20640 - sugar ABC transporter permease, at 4,485,205 to 4,486,044 _20640 Position (kb) 4483 4484 4485 4486Strain fitness (log2 ratio) -2 -1 0 1at 4485.078 kb on - strand, within PS417_20635at 4485.972 kb on + strandat 4486.001 kb on - strandat 4486.050 kb on - strandat 4486.085 kb on - strandat 4486.085 kb on - strandat 4486.085 kb on - strandat 4486.085 kb on - strandat 4486.085 kb on - strandat 4486.085 kb on - strandat 4486.085 kb on - strandat 4486.089 kb on - strandat 4486.089 kb on - strandat 4486.121 kb on - strandat 4486.166 kb on + strandat 4486.168 kb on + strandat 4486.169 kb on - strandat 4486.169 kb on - strandat 4486.169 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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4,485,078 - PS417_20635 0.90 -1.3
4,485,972 + -2.7
4,486,001 - +0.3
4,486,050 - -1.2
4,486,085 - -2.4
4,486,085 - -1.6
4,486,085 - -2.0
4,486,085 - -1.9
4,486,085 - -1.8
4,486,085 - -1.8
4,486,085 - -2.0
4,486,089 - -2.6
4,486,089 - -1.7
4,486,121 - +0.2
4,486,166 + -1.6
4,486,168 + -1.8
4,486,169 - -1.7
4,486,169 - +0.2
4,486,169 - +0.3

Or see this region's nucleotide sequence