Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20620 and PS417_20625 overlap by 4 nucleotides PS417_20625 and PS417_20630 are separated by 16 nucleotides PS417_20630 and PS417_20635 are separated by 35 nucleotides PS417_20635 and PS417_20640 overlap by 11 nucleotides
PS417_20620: PS417_20620 - glycosyl transferase family 2, at 4,481,872 to 4,482,870
_20620
PS417_20625: PS417_20625 - hypothetical protein, at 4,482,867 to 4,483,205
_20625
PS417_20630: PS417_20630 - adenylylsulfate kinase, at 4,483,222 to 4,483,815
_20630
PS417_20635: PS417_20635 - ABC transporter ATP-binding protein, at 4,483,851 to 4,485,215
_20635
PS417_20640: PS417_20640 - sugar ABC transporter permease, at 4,485,205 to 4,486,044
_20640
Position (kb)
4483
4484
4485
4486 Strain fitness (log2 ratio)
-2
-1
0
1 at 4485.078 kb on - strand, within PS417_20635 at 4485.972 kb on + strand at 4486.001 kb on - strand at 4486.050 kb on - strand at 4486.085 kb on - strand at 4486.085 kb on - strand at 4486.085 kb on - strand at 4486.085 kb on - strand at 4486.085 kb on - strand at 4486.085 kb on - strand at 4486.085 kb on - strand at 4486.089 kb on - strand at 4486.089 kb on - strand at 4486.121 kb on - strand at 4486.166 kb on + strand at 4486.168 kb on + strand at 4486.169 kb on - strand at 4486.169 kb on - strand at 4486.169 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 4,485,078 - PS417_20635 0.90 -1.3 4,485,972 + -2.7 4,486,001 - +0.3 4,486,050 - -1.2 4,486,085 - -2.4 4,486,085 - -1.6 4,486,085 - -2.0 4,486,085 - -1.9 4,486,085 - -1.8 4,486,085 - -1.8 4,486,085 - -2.0 4,486,089 - -2.6 4,486,089 - -1.7 4,486,121 - +0.2 4,486,166 + -1.6 4,486,168 + -1.8 4,486,169 - -1.7 4,486,169 - +0.2 4,486,169 - +0.3
Or see this region's nucleotide sequence