Strain Fitness in Pseudomonas simiae WCS417 around PS417_18585

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18580 and PS417_18585 are separated by 64 nucleotidesPS417_18585 and PS417_18590 are separated by 53 nucleotidesPS417_18590 and PS417_18595 are separated by 162 nucleotides PS417_18580: PS417_18580 - aspartate-semialdehyde dehydrogenase, at 4,035,552 to 4,036,664 _18580 PS417_18585: PS417_18585 - 3-isopropylmalate dehydrogenase, at 4,036,729 to 4,037,811 _18585 PS417_18590: PS417_18590 - SAM-dependent methyltransferase, at 4,037,865 to 4,038,629 _18590 PS417_18595: PS417_18595 - 3-isopropylmalate dehydratase, at 4,038,792 to 4,039,436 _18595 Position (kb) 4036 4037 4038Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4036.672 kb on - strandat 4036.682 kb on - strandat 4036.983 kb on - strand, within PS417_18585at 4036.996 kb on - strand, within PS417_18585at 4037.147 kb on + strand, within PS417_18585at 4037.147 kb on + strand, within PS417_18585at 4037.148 kb on - strand, within PS417_18585at 4037.148 kb on - strand, within PS417_18585at 4037.174 kb on + strand, within PS417_18585at 4037.232 kb on + strand, within PS417_18585at 4037.337 kb on - strand, within PS417_18585at 4037.391 kb on - strand, within PS417_18585at 4037.889 kb on + strandat 4037.889 kb on + strandat 4038.022 kb on + strand, within PS417_18590at 4038.022 kb on + strand, within PS417_18590at 4038.050 kb on + strand, within PS417_18590at 4038.154 kb on + strand, within PS417_18590at 4038.154 kb on + strand, within PS417_18590at 4038.155 kb on - strand, within PS417_18590at 4038.155 kb on - strand, within PS417_18590at 4038.783 kb on + strandat 4038.787 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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4,036,672 - -1.7
4,036,682 - -0.4
4,036,983 - PS417_18585 0.23 -4.8
4,036,996 - PS417_18585 0.25 -1.1
4,037,147 + PS417_18585 0.39 -4.0
4,037,147 + PS417_18585 0.39 -2.1
4,037,148 - PS417_18585 0.39 -4.4
4,037,148 - PS417_18585 0.39 -3.0
4,037,174 + PS417_18585 0.41 -4.6
4,037,232 + PS417_18585 0.46 -2.1
4,037,337 - PS417_18585 0.56 -3.7
4,037,391 - PS417_18585 0.61 -4.6
4,037,889 + +0.0
4,037,889 + -0.3
4,038,022 + PS417_18590 0.21 -0.6
4,038,022 + PS417_18590 0.21 -0.3
4,038,050 + PS417_18590 0.24 -0.7
4,038,154 + PS417_18590 0.38 -1.3
4,038,154 + PS417_18590 0.38 -1.4
4,038,155 - PS417_18590 0.38 -0.3
4,038,155 - PS417_18590 0.38 +1.1
4,038,783 + -0.6
4,038,787 + -0.0

Or see this region's nucleotide sequence