Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18580 and PS417_18585 are separated by 64 nucleotides PS417_18585 and PS417_18590 are separated by 53 nucleotides PS417_18590 and PS417_18595 are separated by 162 nucleotides
PS417_18580: PS417_18580 - aspartate-semialdehyde dehydrogenase, at 4,035,552 to 4,036,664
_18580
PS417_18585: PS417_18585 - 3-isopropylmalate dehydrogenase, at 4,036,729 to 4,037,811
_18585
PS417_18590: PS417_18590 - SAM-dependent methyltransferase, at 4,037,865 to 4,038,629
_18590
PS417_18595: PS417_18595 - 3-isopropylmalate dehydratase, at 4,038,792 to 4,039,436
_18595
Position (kb)
4036
4037
4038 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 4036.672 kb on - strand at 4036.682 kb on - strand at 4036.983 kb on - strand, within PS417_18585 at 4036.996 kb on - strand, within PS417_18585 at 4037.147 kb on + strand, within PS417_18585 at 4037.147 kb on + strand, within PS417_18585 at 4037.148 kb on - strand, within PS417_18585 at 4037.148 kb on - strand, within PS417_18585 at 4037.174 kb on + strand, within PS417_18585 at 4037.232 kb on + strand, within PS417_18585 at 4037.337 kb on - strand, within PS417_18585 at 4037.391 kb on - strand, within PS417_18585 at 4037.889 kb on + strand at 4037.889 kb on + strand at 4038.022 kb on + strand, within PS417_18590 at 4038.022 kb on + strand, within PS417_18590 at 4038.050 kb on + strand, within PS417_18590 at 4038.154 kb on + strand, within PS417_18590 at 4038.154 kb on + strand, within PS417_18590 at 4038.155 kb on - strand, within PS417_18590 at 4038.155 kb on - strand, within PS417_18590 at 4038.783 kb on + strand at 4038.787 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 4,036,672 - -1.7 4,036,682 - -0.4 4,036,983 - PS417_18585 0.23 -4.8 4,036,996 - PS417_18585 0.25 -1.1 4,037,147 + PS417_18585 0.39 -4.0 4,037,147 + PS417_18585 0.39 -2.1 4,037,148 - PS417_18585 0.39 -4.4 4,037,148 - PS417_18585 0.39 -3.0 4,037,174 + PS417_18585 0.41 -4.6 4,037,232 + PS417_18585 0.46 -2.1 4,037,337 - PS417_18585 0.56 -3.7 4,037,391 - PS417_18585 0.61 -4.6 4,037,889 + +0.0 4,037,889 + -0.3 4,038,022 + PS417_18590 0.21 -0.6 4,038,022 + PS417_18590 0.21 -0.3 4,038,050 + PS417_18590 0.24 -0.7 4,038,154 + PS417_18590 0.38 -1.3 4,038,154 + PS417_18590 0.38 -1.4 4,038,155 - PS417_18590 0.38 -0.3 4,038,155 - PS417_18590 0.38 +1.1 4,038,783 + -0.6 4,038,787 + -0.0
Or see this region's nucleotide sequence