Strain Fitness in Pseudomonas simiae WCS417 around PS417_14940

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14930 and PS417_14935 are separated by 28 nucleotidesPS417_14935 and PS417_14940 are separated by 131 nucleotidesPS417_14940 and PS417_14945 are separated by 116 nucleotides PS417_14930: PS417_14930 - acyl-CoA dehydrogenase, at 3,260,489 to 3,261,652 _14930 PS417_14935: PS417_14935 - transposase, at 3,261,681 to 3,262,499 _14935 PS417_14940: PS417_14940 - LysR family transcriptional regulator, at 3,262,631 to 3,263,521 _14940 PS417_14945: PS417_14945 - beta-lactamase, at 3,263,638 to 3,265,452 _14945 Position (kb) 3262 3263 3264Strain fitness (log2 ratio) -2 -1 0 1at 3261.815 kb on - strand, within PS417_14935at 3261.943 kb on + strand, within PS417_14935at 3262.126 kb on + strand, within PS417_14935at 3263.044 kb on - strand, within PS417_14940at 3263.741 kb on - strandat 3264.020 kb on - strand, within PS417_14945at 3264.020 kb on - strand, within PS417_14945at 3264.140 kb on - strand, within PS417_14945at 3264.140 kb on - strand, within PS417_14945at 3264.211 kb on + strand, within PS417_14945at 3264.457 kb on + strandat 3264.471 kb on - strand, within PS417_14945at 3264.488 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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3,261,815 - PS417_14935 0.16 -1.2
3,261,943 + PS417_14935 0.32 +0.1
3,262,126 + PS417_14935 0.54 -1.5
3,263,044 - PS417_14940 0.46 -2.4
3,263,741 - -0.0
3,264,020 - PS417_14945 0.21 -0.3
3,264,020 - PS417_14945 0.21 +1.4
3,264,140 - PS417_14945 0.28 -0.9
3,264,140 - PS417_14945 0.28 +0.8
3,264,211 + PS417_14945 0.32 +0.1
3,264,457 + +1.4
3,264,471 - PS417_14945 0.46 +0.5
3,264,488 - -0.7

Or see this region's nucleotide sequence