Strain Fitness in Pseudomonas simiae WCS417 around PS417_09325

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09320 and PS417_09325 are separated by 118 nucleotidesPS417_09325 and PS417_09330 are separated by 105 nucleotides PS417_09320: PS417_09320 - diguanylate phosphodiesterase, at 2,020,889 to 2,022,658 _09320 PS417_09325: PS417_09325 - peptidase S41, at 2,022,777 to 2,024,891 _09325 PS417_09330: PS417_09330 - NAD(P)H-quinone oxidoreductase, at 2,024,997 to 2,025,959 _09330 Position (kb) 2022 2023 2024 2025Strain fitness (log2 ratio) -2 -1 0 1at 2022.139 kb on - strand, within PS417_09320at 2022.732 kb on + strandat 2022.733 kb on - strandat 2022.733 kb on - strandat 2022.733 kb on - strandat 2022.733 kb on - strandat 2022.734 kb on + strandat 2022.734 kb on + strandat 2022.735 kb on - strandat 2022.735 kb on - strandat 2022.763 kb on + strandat 2023.403 kb on - strand, within PS417_09325at 2023.768 kb on + strand, within PS417_09325at 2024.157 kb on - strand, within PS417_09325at 2024.170 kb on + strand, within PS417_09325at 2024.171 kb on - strand, within PS417_09325at 2024.516 kb on - strand, within PS417_09325at 2024.522 kb on + strand, within PS417_09325at 2024.891 kb on + strandat 2024.891 kb on + strandat 2024.891 kb on + strandat 2024.892 kb on - strandat 2024.894 kb on + strandat 2024.894 kb on + strandat 2024.958 kb on - strandat 2025.053 kb on + strandat 2025.351 kb on + strand, within PS417_09330at 2025.624 kb on + strand, within PS417_09330at 2025.624 kb on + strand, within PS417_09330at 2025.742 kb on + strand, within PS417_09330at 2025.742 kb on + strand, within PS417_09330

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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2,022,139 - PS417_09320 0.71 -1.0
2,022,732 + -1.3
2,022,733 - -0.6
2,022,733 - -0.1
2,022,733 - +0.3
2,022,733 - +0.4
2,022,734 + -0.7
2,022,734 + +0.4
2,022,735 - +0.7
2,022,735 - +0.4
2,022,763 + -0.7
2,023,403 - PS417_09325 0.30 -1.8
2,023,768 + PS417_09325 0.47 -0.1
2,024,157 - PS417_09325 0.65 -1.8
2,024,170 + PS417_09325 0.66 -1.1
2,024,171 - PS417_09325 0.66 -1.7
2,024,516 - PS417_09325 0.82 -1.4
2,024,522 + PS417_09325 0.83 -0.4
2,024,891 + -1.2
2,024,891 + -0.8
2,024,891 + -0.8
2,024,892 - +0.7
2,024,894 + -0.6
2,024,894 + -2.5
2,024,958 - -0.0
2,025,053 + -0.1
2,025,351 + PS417_09330 0.37 -0.1
2,025,624 + PS417_09330 0.65 +0.1
2,025,624 + PS417_09330 0.65 -0.8
2,025,742 + PS417_09330 0.77 +0.5
2,025,742 + PS417_09330 0.77 +0.8

Or see this region's nucleotide sequence