Strain Fitness in Pseudomonas simiae WCS417 around PS417_08230

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08225 and PS417_08230 are separated by 3 nucleotidesPS417_08230 and PS417_08235 are separated by 24 nucleotides PS417_08225: PS417_08225 - acetolactate synthase, at 1,801,530 to 1,803,245 _08225 PS417_08230: PS417_08230 - lipopolysaccharide biosynthesis protein RfbH, at 1,803,249 to 1,804,562 _08230 PS417_08235: PS417_08235 - CDP-glucose 4,6-dehydratase, at 1,804,587 to 1,805,672 _08235 Position (kb) 1803 1804 1805Strain fitness (log2 ratio) -3 -2 -1 0 1at 1802.276 kb on - strand, within PS417_08225at 1802.477 kb on - strand, within PS417_08225at 1802.517 kb on - strand, within PS417_08225at 1802.521 kb on - strand, within PS417_08225at 1802.910 kb on - strand, within PS417_08225at 1802.933 kb on - strand, within PS417_08225at 1802.933 kb on - strand, within PS417_08225at 1803.188 kb on - strandat 1803.325 kb on - strandat 1803.407 kb on - strand, within PS417_08230at 1803.436 kb on - strand, within PS417_08230at 1803.725 kb on - strand, within PS417_08230at 1804.589 kb on - strandat 1804.618 kb on + strandat 1804.619 kb on - strandat 1804.772 kb on - strand, within PS417_08235at 1805.053 kb on - strand, within PS417_08235at 1805.195 kb on - strand, within PS417_08235at 1805.354 kb on - strand, within PS417_08235

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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1,802,276 - PS417_08225 0.43 -2.8
1,802,477 - PS417_08225 0.55 -0.6
1,802,517 - PS417_08225 0.58 -1.7
1,802,521 - PS417_08225 0.58 -1.2
1,802,910 - PS417_08225 0.80 -2.2
1,802,933 - PS417_08225 0.82 -1.7
1,802,933 - PS417_08225 0.82 -2.1
1,803,188 - -2.4
1,803,325 - -1.3
1,803,407 - PS417_08230 0.12 -1.7
1,803,436 - PS417_08230 0.14 -1.3
1,803,725 - PS417_08230 0.36 -3.0
1,804,589 - +0.3
1,804,618 + -1.6
1,804,619 - -1.8
1,804,772 - PS417_08235 0.17 -2.4
1,805,053 - PS417_08235 0.43 -0.2
1,805,195 - PS417_08235 0.56 -1.9
1,805,354 - PS417_08235 0.71 -1.0

Or see this region's nucleotide sequence