Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20995

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20990 and CA264_20995 overlap by 26 nucleotidesCA264_20995 and CA264_21000 are separated by 39 nucleotidesCA264_21000 and CA264_21005 are separated by 4 nucleotides CA264_20990: CA264_20990 - conjugal transfer protein TraG, at 59,471 to 61,915 _20990 CA264_20995: CA264_20995 - plasmid transfer protein, at 61,890 to 62,561 _20995 CA264_21000: CA264_21000 - hypothetical protein, at 62,601 to 63,200 _21000 CA264_21005: CA264_21005 - plasmid transfer protein, at 63,205 to 64,200 _21005 Position (kb) 61 62 63Strain fitness (log2 ratio) -2 -1 0 1 2 3at 61.016 kb on + strand, within CA264_20990at 61.017 kb on - strand, within CA264_20990at 61.017 kb on - strand, within CA264_20990at 61.017 kb on - strand, within CA264_20990at 61.026 kb on - strand, within CA264_20990at 61.055 kb on + strand, within CA264_20990at 61.076 kb on + strand, within CA264_20990at 61.127 kb on - strand, within CA264_20990at 61.184 kb on + strand, within CA264_20990at 61.184 kb on + strand, within CA264_20990at 61.210 kb on - strand, within CA264_20990at 61.213 kb on + strand, within CA264_20990at 61.214 kb on - strand, within CA264_20990at 61.237 kb on + strand, within CA264_20990at 61.238 kb on - strand, within CA264_20990at 61.270 kb on + strand, within CA264_20990at 61.271 kb on - strand, within CA264_20990at 61.403 kb on + strand, within CA264_20990at 61.405 kb on + strand, within CA264_20990at 61.405 kb on + strand, within CA264_20990at 61.412 kb on + strand, within CA264_20990at 61.421 kb on - strand, within CA264_20990at 61.421 kb on - strand, within CA264_20990at 61.421 kb on - strand, within CA264_20990at 61.673 kb on + strandat 61.674 kb on - strandat 61.704 kb on - strandat 61.777 kb on - strandat 61.777 kb on - strandat 61.777 kb on - strandat 61.854 kb on + strandat 61.855 kb on - strandat 61.913 kb on + strandat 61.914 kb on - strandat 61.942 kb on + strandat 61.942 kb on + strandat 61.946 kb on - strandat 62.031 kb on - strand, within CA264_20995at 62.066 kb on + strand, within CA264_20995at 62.067 kb on - strand, within CA264_20995at 62.069 kb on + strand, within CA264_20995at 62.069 kb on + strand, within CA264_20995at 62.069 kb on + strand, within CA264_20995at 62.070 kb on - strand, within CA264_20995at 62.169 kb on + strand, within CA264_20995at 62.169 kb on + strand, within CA264_20995at 62.169 kb on + strand, within CA264_20995at 62.170 kb on - strand, within CA264_20995at 62.194 kb on + strand, within CA264_20995at 62.194 kb on + strand, within CA264_20995at 62.195 kb on - strand, within CA264_20995at 62.195 kb on - strand, within CA264_20995at 62.202 kb on + strand, within CA264_20995at 62.288 kb on + strand, within CA264_20995at 62.303 kb on + strand, within CA264_20995at 62.304 kb on - strand, within CA264_20995at 62.307 kb on + strandat 62.308 kb on - strand, within CA264_20995at 62.308 kb on - strand, within CA264_20995at 62.422 kb on - strand, within CA264_20995at 62.542 kb on - strandat 62.542 kb on - strandat 62.564 kb on + strandat 62.576 kb on + strandat 62.588 kb on - strandat 62.588 kb on - strandat 62.593 kb on + strandat 62.623 kb on + strandat 62.683 kb on - strand, within CA264_21000at 62.683 kb on - strand, within CA264_21000at 62.683 kb on - strand, within CA264_21000at 62.742 kb on - strand, within CA264_21000at 62.760 kb on + strand, within CA264_21000at 62.784 kb on - strand, within CA264_21000at 62.805 kb on - strand, within CA264_21000at 62.805 kb on - strand, within CA264_21000at 62.861 kb on - strand, within CA264_21000at 62.869 kb on + strand, within CA264_21000at 62.870 kb on - strand, within CA264_21000at 62.870 kb on - strand, within CA264_21000at 62.871 kb on + strand, within CA264_21000at 62.931 kb on + strand, within CA264_21000at 63.015 kb on - strand, within CA264_21000at 63.060 kb on - strand, within CA264_21000at 63.066 kb on - strand, within CA264_21000at 63.066 kb on - strand, within CA264_21000at 63.078 kb on + strand, within CA264_21000at 63.117 kb on + strand, within CA264_21000at 63.117 kb on + strand, within CA264_21000at 63.117 kb on + strand, within CA264_21000at 63.118 kb on - strand, within CA264_21000at 63.118 kb on - strand, within CA264_21000at 63.131 kb on + strand, within CA264_21000at 63.222 kb on + strandat 63.222 kb on + strandat 63.222 kb on + strandat 63.222 kb on + strandat 63.223 kb on - strandat 63.263 kb on + strandat 63.263 kb on + strandat 63.264 kb on - strandat 63.264 kb on - strandat 63.264 kb on - strandat 63.329 kb on - strand, within CA264_21005at 63.347 kb on - strand, within CA264_21005at 63.347 kb on - strand, within CA264_21005at 63.439 kb on - strand, within CA264_21005at 63.493 kb on + strand, within CA264_21005at 63.494 kb on - strand, within CA264_21005at 63.506 kb on + strand, within CA264_21005

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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61,016 + CA264_20990 0.63 -0.0
61,017 - CA264_20990 0.63 -0.8
61,017 - CA264_20990 0.63 +0.1
61,017 - CA264_20990 0.63 -1.5
61,026 - CA264_20990 0.64 +0.7
61,055 + CA264_20990 0.65 +1.0
61,076 + CA264_20990 0.66 +0.0
61,127 - CA264_20990 0.68 -0.6
61,184 + CA264_20990 0.70 +0.2
61,184 + CA264_20990 0.70 +0.0
61,210 - CA264_20990 0.71 -0.8
61,213 + CA264_20990 0.71 -0.2
61,214 - CA264_20990 0.71 +0.2
61,237 + CA264_20990 0.72 +0.5
61,238 - CA264_20990 0.72 +0.8
61,270 + CA264_20990 0.74 -0.0
61,271 - CA264_20990 0.74 +0.3
61,403 + CA264_20990 0.79 -0.3
61,405 + CA264_20990 0.79 -0.5
61,405 + CA264_20990 0.79 -0.4
61,412 + CA264_20990 0.79 -1.1
61,421 - CA264_20990 0.80 -2.4
61,421 - CA264_20990 0.80 -0.0
61,421 - CA264_20990 0.80 -0.8
61,673 + +0.5
61,674 - -0.5
61,704 - +0.4
61,777 - +0.5
61,777 - -0.3
61,777 - -0.4
61,854 + -1.2
61,855 - +0.3
61,913 + +0.4
61,914 - +2.5
61,942 + -0.9
61,942 + -1.7
61,946 - -0.3
62,031 - CA264_20995 0.21 -0.8
62,066 + CA264_20995 0.26 -0.2
62,067 - CA264_20995 0.26 +0.6
62,069 + CA264_20995 0.27 -1.8
62,069 + CA264_20995 0.27 -1.5
62,069 + CA264_20995 0.27 -1.6
62,070 - CA264_20995 0.27 -0.8
62,169 + CA264_20995 0.42 -0.4
62,169 + CA264_20995 0.42 +0.5
62,169 + CA264_20995 0.42 +0.5
62,170 - CA264_20995 0.42 -1.6
62,194 + CA264_20995 0.45 -1.0
62,194 + CA264_20995 0.45 +0.2
62,195 - CA264_20995 0.45 -1.2
62,195 - CA264_20995 0.45 -2.2
62,202 + CA264_20995 0.46 -0.2
62,288 + CA264_20995 0.59 -1.7
62,303 + CA264_20995 0.61 +0.1
62,304 - CA264_20995 0.62 -0.4
62,307 + +2.5
62,308 - CA264_20995 0.62 -1.6
62,308 - CA264_20995 0.62 -0.7
62,422 - CA264_20995 0.79 +0.5
62,542 - +1.3
62,542 - -1.4
62,564 + -0.5
62,576 + +0.8
62,588 - -0.4
62,588 - -0.2
62,593 + -0.6
62,623 + +0.4
62,683 - CA264_21000 0.14 +0.5
62,683 - CA264_21000 0.14 -0.2
62,683 - CA264_21000 0.14 +1.0
62,742 - CA264_21000 0.23 +3.3
62,760 + CA264_21000 0.27 +0.1
62,784 - CA264_21000 0.30 +0.2
62,805 - CA264_21000 0.34 +3.3
62,805 - CA264_21000 0.34 -1.8
62,861 - CA264_21000 0.43 +0.2
62,869 + CA264_21000 0.45 +0.9
62,870 - CA264_21000 0.45 +1.0
62,870 - CA264_21000 0.45 +0.9
62,871 + CA264_21000 0.45 -0.4
62,931 + CA264_21000 0.55 -0.3
63,015 - CA264_21000 0.69 +0.9
63,060 - CA264_21000 0.77 +0.2
63,066 - CA264_21000 0.78 +2.5
63,066 - CA264_21000 0.78 +0.1
63,078 + CA264_21000 0.80 -0.2
63,117 + CA264_21000 0.86 +0.2
63,117 + CA264_21000 0.86 -0.2
63,117 + CA264_21000 0.86 +0.0
63,118 - CA264_21000 0.86 +2.1
63,118 - CA264_21000 0.86 +0.0
63,131 + CA264_21000 0.88 +0.3
63,222 + -1.8
63,222 + -0.0
63,222 + +0.4
63,222 + +0.7
63,223 - +0.2
63,263 + +1.1
63,263 + -1.4
63,264 - +0.8
63,264 - +0.2
63,264 - +0.1
63,329 - CA264_21005 0.12 -0.6
63,347 - CA264_21005 0.14 +0.1
63,347 - CA264_21005 0.14 -1.0
63,439 - CA264_21005 0.23 +1.0
63,493 + CA264_21005 0.29 +0.1
63,494 - CA264_21005 0.29 -0.9
63,506 + CA264_21005 0.30 +0.8

Or see this region's nucleotide sequence