Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10860

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10855 and CA264_10860 are separated by 76 nucleotidesCA264_10860 and CA264_10865 are separated by 28 nucleotidesCA264_10865 and CA264_10870 overlap by 1 nucleotides CA264_10855: CA264_10855 - cell division protein, at 2,509,517 to 2,511,529 _10855 CA264_10860: CA264_10860 - hypothetical protein, at 2,511,606 to 2,512,037 _10860 CA264_10865: CA264_10865 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase, at 2,512,066 to 2,512,986 _10865 CA264_10870: CA264_10870 - division/cell wall cluster transcriptional repressor MraZ, at 2,512,986 to 2,513,453 _10870 Position (kb) 2511 2512 2513Strain fitness (log2 ratio) -3 -2 -1 0 1at 2511.596 kb on + strandat 2511.897 kb on + strand, within CA264_10860at 2511.907 kb on + strand, within CA264_10860at 2511.907 kb on + strand, within CA264_10860at 2512.024 kb on - strandat 2512.057 kb on + strandat 2512.058 kb on - strandat 2512.067 kb on + strandat 2512.916 kb on + strandat 2512.980 kb on - strandat 2512.987 kb on + strandat 2512.989 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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2,511,596 + -0.2
2,511,897 + CA264_10860 0.67 +0.7
2,511,907 + CA264_10860 0.70 -1.5
2,511,907 + CA264_10860 0.70 -3.0
2,512,024 - +1.0
2,512,057 + -0.6
2,512,058 - -1.0
2,512,067 + -0.0
2,512,916 + -2.0
2,512,980 - -0.7
2,512,987 + +0.2
2,512,989 + -1.3

Or see this region's nucleotide sequence